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Physical Chemistry Chemical Physics

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Contents list for Physical Chemistry Chemical Physics, issue 19, 2008

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Front cover
Phys. Chem. Chem. Phys., 2008, 10, 2561
DOI: 10.1039/b806487n

front cover image for Physical Chemistry Chemical Physics, Issue 19, 2008


Inside front cover
Phys. Chem. Chem. Phys., 2008, 10, 2562
DOI: 10.1039/b806488c

Contents
Phys. Chem. Chem. Phys., 2008, 10, 2563
DOI: 10.1039/b806489j

Editorial

Stacking interactions
Phys. Chem. Chem. Phys., 2008, 10, 2581
DOI: 10.1039/b805489b

Perspectives

Nature and physical origin of CH/ interaction: significant difference from conventional hydrogen bonds
Seiji Tsuzuki and Asuka Fujii,  Phys. Chem. Chem. Phys., 2008, 10, 2584
DOI: 10.1039/b718656h

Nature and magnitude of aromatic stacking of nucleic acid bases
Jií poner, Kevin E. Riley and Pavel Hobza,  Phys. Chem. Chem. Phys., 2008, 10, 2595
DOI: 10.1039/b719370j

Papers

Intermolecular interactions in solids
Miroslav Rube and Ota Bludský,  Phys. Chem. Chem. Phys., 2008, 10, 2611
DOI: 10.1039/b718701g

Induction effects in metal cation–benzene complexes
Ignacio Soteras, Modesto Orozco and F. Javier Luque,  Phys. Chem. Chem. Phys., 2008, 10, 2616
DOI: 10.1039/b719461g

Crystal packing of TCNQ anion -radicals governed by intermolecular covalent bonding: DFT calculations and statistical analysis of crystal structures
Jingsong Huang, Stephanie Kingsbury and Miklos Kertesz,  Phys. Chem. Chem. Phys., 2008, 10, 2625
DOI: 10.1039/b717752f

A post-SCF complete basis set study on the recognition patterns of uracil and cytosine by aromatic and –aromatic stacking interactions with amino acid residues
Piotr Cysewski,  Phys. Chem. Chem. Phys., 2008, 10, 2636
DOI: 10.1039/b718394a

Substituent effects in parallel-displaced interactions
Stephen A. Arnstein and C. David Sherrill,  Phys. Chem. Chem. Phys., 2008, 10, 2646
DOI: 10.1039/b718742d

The excited states of -stacked 9-methyladenine oligomers: a TD-DFT study in aqueous solution
Roberto Improta,  Phys. Chem. Chem. Phys., 2008, 10, 2656
DOI: 10.1039/b718562f

The post-SCF quantum chemistry characteristics of the guanine–guanine stacking in B-DNA
Piotr Cysewski, aneta Czynikowska, Robert Zaleny and Przemysaw CzelePhys. Chem. Chem. Phys., 2008, 10, 2665
DOI: 10.1039/b718635e

Thermodynamics of stacking interactions in proteins
Simone Marsili, Riccardo Chelli, Vincenzo Schettino and Piero Procacci,  Phys. Chem. Chem. Phys., 2008, 10, 2673
DOI: 10.1039/b718519g

Through-space interactions between parallel-offset arenes at the van der Waals distance: 1,8-diarylbiphenylene syntheses, structure and QM computations
Franco Cozzi, Rita Annunziata, Maurizio Benaglia, Kim K. Baldridge, Gerardo Aguirre, Jesús Estrada, Yongsak Sritana-Anant and Jay S. Siegel,  Phys. Chem. Chem. Phys., 2008, 10, 2686
DOI: 10.1039/b800031j
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Ab initio study of substituent effects in the interactions of dimethyl ether with aromatic rings
Jay C. Amicangelo, Benjamin W. Gung, Daniel G. Irwin and Natalie C. Romano,  Phys. Chem. Chem. Phys., 2008, 10, 2695
DOI: 10.1039/b718722j

A QM/MM study of fluoroaromatic interactions at the binding site of carbonic anhydrase II, using a DFT method corrected for dispersive interactions
Claudio A. Morgado, Ian H. Hillier, Neil A. Burton and Joseph J. W. McDouall,  Phys. Chem. Chem. Phys., 2008, 10, 2706
DOI: 10.1039/b715514j

Searching of potential energy curves for the benzene dimer using dispersion-corrected density functional theory
Prakash Chandra Jha, Zilvinas Rinkevicius, Hans Ĺgren, Prasenjit Seal and Swapan Chakrabarti,  Phys. Chem. Chem. Phys., 2008, 10, 2715
DOI: 10.1039/b717983a

Structures and interaction energies of stacked graphene–nucleobase complexes
Jens Antony and Stefan Grimme,  Phys. Chem. Chem. Phys., 2008, 10, 2722
DOI: 10.1039/b718788b

Describing weak interactions of biomolecules with dispersion-corrected density functional theory
I-Chun Lin and Ursula Rothlisberger,  Phys. Chem. Chem. Phys., 2008, 10, 2730
DOI: 10.1039/b718594d

Physical origins of interactions in dimers of polycyclic aromatic hydrocarbons
Rafa Podeszwa and Krzysztof Szalewicz,  Phys. Chem. Chem. Phys., 2008, 10, 2735
DOI: 10.1039/b719725j

Benchmark database on isolated small peptides containing an aromatic side chain: comparison between wave function and density functional theory methods and empirical force field
Haydee Valdes, Kristýna Pluháková, Michal Pitonák, Jan ezá and Pavel Hobza,  Phys. Chem. Chem. Phys., 2008, 10, 2747
DOI: 10.1039/b719294k

Scope and limitations of the SCS-MP2 method for stacking and hydrogen bonding interactions
Rafa A. Bachorz, Florian A. Bischoff, Sebastian Höfener, Wim Klopper, Philipp Ottiger, Roman Leist, Jann A. Frey and Samuel Leutwyler,  Phys. Chem. Chem. Phys., 2008, 10, 2758
DOI: 10.1039/b718494h

The interaction of carbohydrates and amino acids with aromatic systems studied by density functional and semi-empirical molecular orbital calculations with dispersion corrections
Raman Sharma, Jonathan P. McNamara, Rajesh K. Raju, Mark A. Vincent, Ian H. Hillier and Claudio A. Morgado,  Phys. Chem. Chem. Phys., 2008, 10, 2767
DOI: 10.1039/b719764k

Probing the effects of heterogeneity on delocalized interaction energies
Desiree M. Bates, Julie A. Anderson, Ponmile Oloyede and Gregory S. Tschumper,  Phys. Chem. Chem. Phys., 2008, 10, 2775
DOI: 10.1039/b718720c

Competition between stacking and hydrogen bonding: theoretical study of the phenolAr cation and neutral complex and comparison to experiment
Jií erný, Xin Tong, Pavel Hobza and Klaus Müller-Dethlefs,  Phys. Chem. Chem. Phys., 2008, 10, 2780
DOI: 10.1039/b801460b

Calculating stacking interactions in nucleic acid base-pair steps using spin-component scaling and local second order Mřller–Plesset perturbation theory
J. Grant Hill and James A. Platts,  Phys. Chem. Chem. Phys., 2008, 10, 2785
DOI: 10.1039/b718691f

Controlled aggregation of adenine by sugars: physicochemical studies, molecular modelling simulations of sugar–aromatic CH– stacking interactions, and biological significance
Marc Maresca, Adel Derghal, Céline Carravagna, Séverine Dudin and Jacques Fantini,  Phys. Chem. Chem. Phys., 2008, 10, 2792
DOI: 10.1039/b802594k

Computational comparison of the stacking interactions between the aromatic amino acids and the natural or (cationic) methylated nucleobases
Lesley R. Rutledge, Holly F. Durst and Stacey D. Wetmore,  Phys. Chem. Chem. Phys., 2008, 10, 2801
DOI: 10.1039/b718621e

Computational characterization and modeling of buckyball tweezers: density functional study of concave–convex interactions
Yan Zhao and Donald G. Truhlar,  Phys. Chem. Chem. Phys., 2008, 10, 2813
DOI: 10.1039/b717744e

Non-standard base pairing and stacked structures in methyl xanthine clusters
Michael P. Callahan, Zsolt Gengeliczki, Nathan Svadlenak, Haydee Valdes, Pavel Hobza and Mattanjah S. de Vries,  Phys. Chem. Chem. Phys., 2008, 10, 2819
DOI: 10.1039/b719874d

N–H interactions in pyrroles: systematic trends from the vibrational spectroscopy of clusters
Ingo Dauster, Corey A. Rice, Philipp Zielke and Martin A. Suhm,  Phys. Chem. Chem. Phys., 2008, 10, 2827
DOI: 10.1039/b717823a

Experimental and theoretical determination of the accurate interaction energies in benzene–halomethane: the unique nature of the activated CH/ interaction of haloalkanes
Asuka Fujii, Kenta Shibasaki, Takaki Kazama, Ryousuke Itaya, Naohiko Mikami and Seiji Tsuzuki,  Phys. Chem. Chem. Phys., 2008, 10, 2836
DOI: 10.1039/b717053j

IR/UV spectra and quantum chemical calculations of Trp–Ser: Stacking interactions between backbone and indole side-chain
Thomas Häber, Kai Seefeld, Gernot Engler, Stefan Grimme and Karl Kleinermanns,  Phys. Chem. Chem. Phys., 2008, 10, 2844
DOI: 10.1039/b718710f

Fluorine substitution and nonconventional OH intramolecular bond: high-resolution UV spectroscopy and ab initio calculations of 2-(p-fluorophenyl)ethanol
Rosen Karaminkov, Sotir Chervenkov and Hans J. Neusser,  Phys. Chem. Chem. Phys., 2008, 10, 2852
DOI: 10.1039/b718974e

CH/ interactions in methane clusters with polycyclic aromatic hydrocarbons
Seiji Tsuzuki, Kazumasa Honda, Asuka Fujii, Tadafumi Uchimaru and Masuhiro Mikami,  Phys. Chem. Chem. Phys., 2008, 10, 2860
DOI: 10.1039/b718550b

Back matter
Phys. Chem. Chem. Phys., 2008, 10, 2866
DOI: 10.1039/b806490n

Back cover
Phys. Chem. Chem. Phys., 2008, 10, 2867
DOI: 10.1039/b806491c