Issue 6, 2000

Synthesis and binding properties of a macrobicyclic receptor for N-protected peptides with a carboxylic acid terminus

Abstract

A novel macrobicyclic receptor, 3, has been synthesised by linking together a diaminopyridine with suitable amino acids, followed by a double intramolecular cyclisation of a suitably activated precursor. Macrobicycle 3 features a diamidopyridine unit, designed to serve as a specific binding site for carboxylic acid functionality, at the base of an open, bowl-shaped cavity. Incorporation of additional amide functionality around the rim of the bowl-shaped structure provides further hydrogen bonding sites to interact with peptidic guests. The binding properties of 3 with N-protected amino acid and peptide derivatives have been investigated by NMR titration experiments, which reveal that 3 is a strong and selective receptor for peptides with a carboxylic acid terminus in CDCl3 solution, the strongest binding being observed with Cbz-β-alanyl-D-alanine (−ΔGass = 22.8 kJ mol−1). The macrobicycle is reasonably enantioselective (Cbz-β-alanyl-L-alanine, −ΔGass = 19.1 kJ mol−1) and notably the binding of Cbz-β-alanyl lactic acids is considerably weaker than the binding of the corresponding Cbz-β-alanyl alanines (ΔΔGass ≈ 8–9 kJ mol−1). Molecular modelling and 2D NMR studies have been carried out on the free macrobicycle and the 1:1 complex formed with the most strongly bound substrate (Cbz-β-alanyl-D-alanine). These studies provide a consistent picture of the macrobicycle as a flexible receptor, which is able to bind the Cbz-β-alanyl-D-alanine substrate in the macrobicyclic cavity with a series of well defined hydrogen bonds to the alanylalanine amide, and less well defined hydrogen bonds to the benzylcarbamate functionality.

Article information

Article type
Paper
Submitted
08 Oct 1999
Accepted
17 Jan 2000
First published
25 Feb 2000

J. Chem. Soc., Perkin Trans. 1, 2000, 1021-1031

Synthesis and binding properties of a macrobicyclic receptor for N-protected peptides with a carboxylic acid terminus

P. D. Henley, C. P. Waymark, I. Gillies and J. D. Kilburn, J. Chem. Soc., Perkin Trans. 1, 2000, 1021 DOI: 10.1039/A908090B

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