-N-acetyl-neuraminate (R = Me, Bu) complexes in D2O and DMSO-d6: Experimental NMR and DFT computational study
Nuccio Bertazzi*a, Girolamo Casellaa, Francesco Ferranteb, Lorenzo Pelleritoa, Archimede Rotondoc and Enrico Rotondoc
aDipartimento di Chimica Inorganica e Analitica
Stanislao Cannizzaro
, Università di Palermo, Viale delle Scienze Parco d'Orleans II, Ed.17, 90128, Palermo. (Italy). E-mail: bertazzi@unipa.it; Fax: +39 091 427584; Tel: +39 091 6451763
bDipartimento di Chimica Fisica
Filippo Accascina
, Università di Palermo, Viale delle Scienze Parco d'Orleans II, Ed. 17, 90128, Palermo, (Italy)
cDipartimento di Chmica Inorganica, Chimica Analitica e Chimica Fisica, Università di Messina, Salita sperone, 31, 98100, Messina, (Italy)
Two diorganotin(IV)NANA complexes (NANA (1) =
-N-acetyl-Neuraminic Acid = 5-amino-3,5-dideoxy-D-glycero-
-D-galactononulosic acid) with formula Me2Sn(IV)NANA (2) and Bu2Sn(IV)NANA (3) were synthesized and characterized by 1H, 13C and 119Sn NMR spectroscopy, both in D2O and DMSO-d6 solutions. The experimental data in DMSO suggested the monosaccharide bidentate chelation via O1 carboxylate and vicinal O2 alkoxide atoms, which, in D2O, can be dynamically extended to a third binding site (O8 atom) of the pendant chain. Coordination at the tin atom is discussed on the basis of experimental NMR data and DFT calculation.
Neuraminic acid (C9H17O8N) is the unsubstituted basic unit common to a natural occurring group of compounds. These residues, often N-acetylated and sometimes O-substituted, are known as sialic acids1 and are among the most important cell surface carbohydrates.2 They are usually located in the non-reducing ends of glycoproteins, glycolipids and polysaccharides,3 on the outer cell membranes of several bacteria, protozoa and tissues of higher animals. There, sialic acids play lead-roles in recognition and immunological processes4,5 behaving mostly as masks by preventing the recognition of receptors or antigens by the components of the immune-defense system.5
NANA (Fig. 1) is the main sialic acid in humans and has attracted growing attention from organic and medicinal chemists prompting the synthesis of a wide number of derivatives.6 Since NANA is a relatively strong acid (pKa = 2.6), it is deprotonated at physiological pH, thereby providing negative charges onto the red blood cell surface.7 This accounts for the important role played in the erythrocytes lifetime regulation.8 In naturally occurring glycoconjugates, sialic acids are only in the
configuration. A unique exception is represented by the CMP-sialic acids form where the anomeric carbon is in the
configuration.9
![]() |
||
Fig. 1 -N-AcetylNeuraminic Acid (NANA) and numbering of carbon atoms. | ||
Few NMR studies on NANA metal complexes have been so far carried out. Investigation of NANA complexes with alkali and alkaline earth metal ions10 suggest that the glycerol side chain is involved in the coordination. This complexing ability toward CaII was later supported by a careful NMR analysis.11 Further studies on NANA complexes with either biological or toxic metal ions, still suggested, but did not prove pendant chain involvement in coordination.12
It has been shown that complexes derived from organotin(IV) species and carbohydrates, or their acidic derivatives, have different biological properties with respect to those of free organometallic and ligand moieties.13,14
When allowed by geometrical and hindering factors monoacidic derivatives of carbohydrates often act like dianionic chelating agents towards diorganotin(IV), via carboxylate oxygen atoms and suitable alkoxide groups, even at low pH values.1418 In this context 119Sn, 1H and 13C NMR spectroscopy represent a powerful tool in order to investigate organotin(IV) species in solution. 119Sn chemical shift (cs) is very sensitive to the coordination environment of the metal center as well as to dynamic processes such as self-association and/or coordinated solvent exchange.1922
Theoretical 119Sn cs prediction at the DFT-GIAO level for organotin(IV) complexes proved useful in validating the chemical structure on the basis of the mentioned cs/structure correlation2325 even in the presence of dynamic exchange.26
In this work two novel complexes of NANA coordinated with dimethyltin(IV) and dibutyltin(IV) moieties were characterized in D2O and DMSO-d6 by using 1D and 2D specific NMR techniques. In order to support the structural characterizations, NMR data are compared with calculated 119Sn and 13C cs at the DFT-GIAO level, taking into account also a possible solvent coordination to the metal center.
NMR study in D2O
1H and 13C resonances and 2,3J(1H,1H) scalar coupling constants for (1), (2) and (3) are reported in Tables 1, 2 and 3, respectively.
| H3eq
| H3ax
| H4 | H5 | H6 | H7 | H8 | H9 | H9![]() | H11 | Ha
| Ha
| Ha
| Ha /Mea
|
|
| D2O | ||||||||||||||
| NANA (1) pH = 3 | 1.79 | 2.20 | 4.01 | 3.87 | 3.96 | 3.48 | 3.71 | 3.57 | 3.79 | 2.01 | | | | |
| Me2SnNANA (2) pH = 3.5 | 2.08 | 2.08 | 4.09 | 3.91 | 4.04 | 3.53 | 3.69 | 3.64 | 3.81 | 2.05 | | | | 0.85 |
![]() ![]() | 0.29 | 0.12 | 0.08 | 0.04 | 0.08 | 0.05 | 0.02 | 0.07 | 0.02 | 0.04 | ||||
| Bu2SnNANA (3) pH = 2.5 | 2.02 | 2.07 | 4.06 | 3.90 | 4.02 | 3.51 | 3.68 | 3.63 | 3.89 | 2.07 | 1.54 | 1.58 | 1.32 | 0.86 |
![]() ![]() | 0.23 | 0.13 | 0.05 | 0.03 | 0.06 | 0.03 | 0.03 | 0.06 | 0.10 | 0.06 | ||||
| DMSO-d6 | ||||||||||||||
| NANA (1) | 1.67 | 1.97 | 3.83 | 3.48 | 3.73 | 3.15 | 3.48 | 3.29 | 3.59 | 1.86 | | | | |
| Me2SnNANA (2) | 2.03 | 1.67 | 3.87 | 3.57 | 3.82 | 3.23 | 3.42 | 3.33 | 3.45 | 1.88 | | | | 0.56 |
![]() ![]() | 0.36 | 0.30 | 0.04 | 0.09 | 0.09 | 0.08 | 0.06 | 0.04 | 0.14 | 0.02 | ||||
| Bu2SnNANA (3) | 2.05 | 1.67 | 3.88 | 3.47 | 3.83 | 3.25 | 3.39 | 3.36 | 3.54 | 1.90 | 1.50 | 1.28 | 1.26 | 0.84 |
![]() ![]() | 0.38 | 0.30 | 0.05 | 0.01 | 0.10 | 0.10 | 0.09 | 0.07 | 0.05 | 0.04 | ||||
a H , H , H , H = butylic protons of Bu2Sn(IV)2+; Me = methylic protons of Me2Sn(IV)2+. |
||||||||||||||
for NANA (1), Me2SnNANA (2) and Bu2SnNANA (3) in D2O and DMSO-d6 solutions
| C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 | C10 | C11 | Ca
| Ca
| Ca
| Ca /Mea
|
|
| D2O | |||||||||||||||
| NANA (1) pH = 3.0 | 178.1 | 98.7 | 41.8 | 69.7 | 54.8 | 72.9 | 71.1 | 72.9 | 65.9 | 177.5 | 24.8 | | | | |
| Me2SnNANA (2) pH = 3.5 | 180.9 | 99.7 | 42.8 | 70.1 | 55.2 | 72.7 | 71.1 | 72.9 | 65.8 | 177.5 | 24.8 | | | | 7.1 |
![]() ![]() | 2.8 | 1.0 | 1.0 | 0.4 | 0.4 | 0.2 | 0.0 | 0.0 | 0.1 | 0.0 | 0.0 | ||||
| Bu2SnNANA (3) pH = 2.5 | 181.0 | 99.7 | 42.9 | 70.1 | 55.3 | 72.7 | 71.2 | 73.1 | 65.7 | 177.6 | 24.8 | 26.5 | 28.9 | 28.6 | 15.5 |
![]() ![]() | 2.9 | 1.0 | 1.1 | 0.4 | 0.5 | 0.2 | 0.1 | 0.2 | 0.2 | 0.1 | 0.0 | ||||
| DMSO-d6 | |||||||||||||||
| NANA (1) | 171.4 | 94.7 | 42.2 | 65.7 | 53.0 | 70.3 | 69.1 | 69.8 | 63.6 | 171.9 | 22.6 | | | | |
| Me2SnNANA (2) | 175.1 | 96.7 | 42.2 | 66.9 | 54.1 | 70.6 | 69.5 | 70.1 | 63.9 | 172.0 | 22.8 | | | | 3.5 |
![]() ![]() | 3.7 | 2.0 | 0.0 | 1.2 | 1.1 | 0.3 | 0.4 | 0.3 | 0.3 | 0.1 | 0.2 | ||||
| Bu2SnNANA (3) | 174.9 | 96.5 | 42.2 | 66.7 | 54.1 | 70.6 | 69.3 | 69.9 | 63.5 | 171.8 | 22.7 | 26.6 | 25.9 | 21.8 | 13.6 |
![]() ![]() | 3.5 | 1.8 | 0.0 | 1.0 | 1.1 | 0.3 | 0.2 | 0.1 | 0.1 | 0.1 | 0.1 | ||||
a C , C , C , C = butylic carbons of Bu2Sn(IV)2+; Me = methylic carbons of Me2Sn(IV)2+. |
|||||||||||||||
j] estimated according to27
| 2J3a,3e
| 3J3a,4
| 3J3e,4
| 3J4,5
| 3J5,6
| 3J6,7
| 3J7,8
| 3J8,9
| 3J8,9
| 3J9,9
|
|
| (1) | 12.9 | 11.2 | 4.8 | 10.2 | 10.1 | 0.7 | 9.2 | 6.2 | 2.5 | 11.7 |
| (174°) | (56°) | (176°) | (172°) | |||||||
| (2) | | | | 10.2 | 10.2 | |||||
| (176°a) | (172°a) | 0.7 | 9.0 | 5.7 | 2.3 | 11.3 | ||||
| (3) | | | | 10.5 | 10.3 | |||||
| (176°a) | (172°a) | n.d | 8.7 | 7.6 | | 11.2 | ||||
| a Largest dihedral angles obtained for 3J4,5 = 3J5,6 = 9.3 Hz. | ||||||||||
For (1) data are similar to those previously reported.10123J(Hn, Hm; n
m) coupling constants in (1), (2) and (3) are consistent with the typical 2C5 rigid conformation of the monosaccharidic ring, where, in the glycerol chain, the H8 is trans to H7 (Fig. 1). The 13C{1H} spectra show that C1, C2 and C3 in compounds (2) and (3) have a larger 
than the free NANA (1), which is consistent with coordination of both carboxylate O1 and the alkoxide O2 atoms (Fig. 2).
![]() |
||
| Fig. 2 Coordination of NANA via carboxylic and alkoxydic O2 oxygen atoms (R = Me, Bu). | ||
Complexation does not cause important changes in NANA proton resonances, except for H3eq and H3ax which are well separated in the free ligand, but gives rise to overlapped signals in (2) and (3) (see also NMR study in DMSO-d6 section). The 2D-NOESY spectra (Fig. 3), besides the expected through-space intraligand contacts, also show a dipolar interaction between H8 and Sn-bonded alkyl protons (methyl in (2) and
-CH2 protons in (3), respectively).
![]() |
||
| Fig. 3 1H 2D-NOESY spectrum of (2). The CH3H8 signal is indicated. | ||
This strongly supports that also O8 acts, at least temporary, as third coordinating site (Fig. 4). Fast reversible, probably proton promoted, cleavage of SnO bonds is confirmed by the lack of NANA-proton/119Sn scalar coupling.
![]() |
||
| Fig. 4 Coordination of NANA via carboxylic and alkoxydic O8 oxygen atoms (R = Me, Bu). | ||
Methyl protons of the R2Sn(IV) moiety in compound (2) are observed as a singlet at 0.85 ppm flanked by Sn satellites [2J(119Sn, 1H) = 87 Hz]. This value is consistent with a MeSnMe angle close to 140°.28 From the acid pD value we infer that also hydrolyzed species should occur in solution and they have 13C cs values close to the non-hydrolyzed ones (See
Computational Study in D2O
section).
Due to the fast ligand exchange, 119Sn{1H} spectrum of (2) shows a very broad signal centered at 165 ppm (with a line width W1/2
800 Hz). The cs value, which is borderline for a penta- or hexa-coordinated tin(IV),15,18 would suggest the presence of at least one solvent molecule in the tin coordination sphere. For (3) broad signals and poor solubility prevented any 119Sn resonance detection.
NMR study in DMSO-d6
13C{1H} spectra are similar to those obtained in water, with a systematic shift towards lower frequencies. Again, the major 
are recorded for C1 and C2 accounting for the carboxylate O1 and the next O2 bidentate coordination (Table 2). Methyl-119Sn scalar couplings of (2) [1J(119Sn, 13C) = 675 Hz and 2J(119Sn, 1H) = 83 Hz] suit a CSnC angle of ca. 135°.28,291H NMR data show that the metal exerts opposite effects on H3ax and H3eq frequencies, driven by the coordination geometry to lay in different d-electrons anisotropic shielding cones (Table 1). On this basis, H3 
are proportional to the time spent by O2 as coordinating site. In water, fast reversible SnO2 cleavage, causes H3ax and H3eq intermediate opposite shift leading to signal collapse. In DMSO-d6 the enhanced stability of SnO2 bond fits the observed frequency inversion. Lower exchange rates of (2) and (3) in the aprotic DMSO-d6 solvent are witnessed by sharper 119Sn signals at (126 ppm, W1/2 = 51 Hz, and 148 ppm, W1/2 =22 Hz respectively). Moreover, long-range scalar coupling connections of H3ax and H3eq with 119 Sn for (2) and (3), present only in DMSOd6 prove SnO2 bond kinetic stability (Fig. 2). The lack of any other scalar coupling with NANA protons supports that coordination involves exclusively O1 and O2 atoms. Unlike the D2O case, 2D-NOESY did not detect through-space connection between Snalkyl and NANA pendant chain protons, according with the lack of O8Sn interaction.
Computational study in D2O
The computational study was performed considering three relevant issues, namely: the alternate O2/O8 alkoxide coordination (besides the carboxylic oxygen), the interaction between tin and water molecules, by explicitly including solvent molecules in the metal first coordination sphere and, finally, the previously mentioned occurrence of hydrolysed species. In this way a total of sixteen different model structures have been set up (Fig. 5 shows the models labeling). Tetra-coordinated tin structures were not considered because of the large estimated CSnC angle. Selected calculated structural data for all the optimized structures are reported as Electronic Supplementary Information (ESI
).
Models for non-hydrolysed species
SnC and SnO bond distances, including coordinated water molecules, are all in the ranges experimentally observed.30 For the models with one and two coordinated waters, the calculated CSnC angles fall into two distinct ranges namely, 125°132° and 132°145°, respectively. For compound (2) the corresponding value estimated from the experimental 2J(119Sn, 1H) is in agreement with models having two water molecules bonded to the metal center. For compound (3) the models show a similar trend for the CSnC angle of the butyl chains but the lack of an experimental 2J(119Sn, 1H) does not allow an independent estimation of its value. The lowest calculated distances between the alkyl groups [CH3 in (2),
-CH2 in (3)] and H8 for the B1, B2, D1, D2 models are in the 200250 ppm range justifying the observed NOESY signal attributed to the ligand chelation through carboxylate and O8 alcoxide group. Finally, calculated dihedral angles are in agreement with the ones given in Table 3, confirming the 2C5 conformation of the pyranosidic ring. The calculated 119Sn cs for compound (2) (Table 4) obtained for the A2 and the B2 models indicate that the tin centers, in both models, experience a similar electronic structure and are close to the experimental one, on the contrary, 119Sn cs values for the A1 and B1 models indicate a different electronic distribution at the tin atom and are sensibly different from the experimental one. Thus the models with two water molecules well match the experimental 119Sn cs and the tin is formally hexa-coordinated. While the experimental 119Sn cs value (165 ppm) for compound (2) has been so far considered typical for a penta-coordinated dialkyltin(IV)18,21,22 such a discrepancy could be due to the weakness of the tinsolvent bond. For compound (3), in the absence of an experimental 119Sn cs value, calculated data for the 119Sn cs (see ESI
) did not allow any suitable assignment of the studied models, we merely observe that these ones appear acceptable.
| Sn | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 | C10 | C11 | Mea,b
|
|
| NANA (1) | |||||||||||||
| Exp. | | 178.1 | 98.7 | 41.8 | 69.7 | 54.8 | 72.9 | 71.1 | 72.9 | 65.9 | 177.5 | 24.8 | |
| NANA | | 158.7 | 96.9 | 38.4 | 68.4 | 58.1 | 71.5 | 74.8 | 71.0 | 66.6 | 163.8 | 21.0 | |
| Exp. | 165 | 180.9 | 99.7 | 42.8 | 70.1 | 55.2 | 72.7 | 71.1 | 72.9 | 65.8 | 177.5 | 24.8 | 7.1 |
| Non-hydrolyzed Me2SnNANA (2) | |||||||||||||
| A1 | 61 | 163.8 | 101.1 | 42.5 | 74.5 | 61.5 | 71.0 | 72.5 | 77.9 | 67.1 | 165.1 | 23.0 | 1.0 |
| A2 | 169 | 163.8 | 101.2 | 42.5 | 74.1 | 61.9 | 70.0 | 73.0 | 76.9 | 67.3 | 165.3 | 22.9 | 3.1 |
| B1 | 99 | 164.3 | 97.6 | 40.8 | 72.5 | 56.7 | 74.2 | 76.4 | 76.6 | 73.7 | 165.3 | 23.9 | 0.5 |
| B2 | 173 | 164.8 | 97.3 | 41.0 | 72.5 | 57.6 | 74.1 | 73.7 | 75.5 | 73.9 | 165.1 | 24.0 | 5.4 |
| Hydrolyzed Me2SnNANA (2) | |||||||||||||
| HA1 | 163 | 165.4 | 101.4 | 43.0 | 74.5 | 64.5 | 67.2 | 73.5 | 77.6 | 68.4 | 163.1 | 23.4 | 0.7 |
| HA2 | 156 | 173.7 | 99.3 | 41.3 | 72.8 | 64.7 | 81.9 | 80.4 | 71.1 | 68.9 | 161.3 | 24.2 | 1.0 |
| HB1 | 135 | 164.8 | 96.7 | 43.9 | 75.3 | 58.9 | 72.1 | 77.3 | 73.9 | 74.4 | 161.8 | 24.3 | 3.6 |
| HB2 | 164 | 162.0 | 96.3 | 42.8 | 75.5 | 58.9 | 71.7 | 79.1 | 74.8 | 74.7 | 162.0 | 24.3 | 3.7 |
| a Me = methylic carbons of Me2Sn(IV)2+. b Average of the calculate values for the two R groups in the Me2Sn(IV)2+ moiety. | |||||||||||||
The 13C cs for all models, reported in Table 4 for (1) and (2) and as ESI
for (3), are fairly close to the experimental values and confirm that coordination does not sensibly affect the 13C frequencies measured for the ligand.
Models for hydrolysed species
Calculated SnC and SnO distances for the hydrolyzed models also fall in the expected experimental ranges.30 The presence of the OH ligand in the tin first coordination sphere causes the weakening of the tincarboxylate SnO1 bond distances (see ESI
) with the exception of the HC1 and the HC2 models. Optimization of HA2, HB2 and HC2 models gave structures where the water molecule lies well outside a coordination bond distance and the tin is penta-coordinated. Taking into account the solution pD value (Table 1) we infer that the amount of hydrolyzed fraction of (2) is less than of 1% of the analytical concentration (ca. 4.3 × 102 mol L1) which is outside the instrumental sensitivity limit. In this respect, calculated 13C and 119Sn cs values for compound (2) (Table 4) cannot be compared with experimental values, and we note that 119Sn cs fall to frequencies lower than those calculated for non-hydrolyzed models, which can be regarded to be the strongly bonded OH group. For compound (3) the solution pD value (Table 1) indicates that hydrolysis proceeds to an extent of ca. 30%. The calculated 119Sn cs for the HC2 model is similar to the values obtained for HC1 and HD1 confirming the view of a penta-coordinated tin in this model (see ESI
). Also in this case the calculated 119Sn cs resulted in more shielding with respect to the same penta-coordinated tin in the non-hydrolyzed models. In HD2 tin is hexa-coordinated with a strongly bonded water molecule . This justifies the large CSnC angle and the increased shielding denounced by the calculated 119Sn cs. Again, the lack of an experimental 119Sn cs value for (3) does not allow comparison with the calculated ones. For compounds (2) and (3) the calculated 13C cs for hydrolyzed and non-hydrolyzed models are very similar (with few exceptions) justifying the occurrence of single signals in the spectrum. Some discrepancies are probably dependent on differences in the conformational arrangement such as, for example, the C6 cs value of HA2, which has a much larger OeC3C4C6 dihedral angle.
Synthesis
NANA (1), dimethyltin(IV) oxide (DMTO) and dibutyltin(IV) oxide (DBTO) were Fluka products (Buchs, Switzerland) used without further purification.
Preparation of the dimethyltin(IV)-
-neuraminate
NANA and DMTO, suspended in 50 mL of H2O, in the 1 : 1 stoichiometric ratio (1 mmol : 1 mmol), were allowed to react for 24 h at about 40 °C, under a constant stirring. The white solid Me2Sn(IV)NANA complex (2), precipitated on cooling after removal of excess solvent in a rotovapor, has been recovered, recrystallized from cold ethanol (95%) and dried over P4O10, in a vacuum.
The recrystallized solid has been analyzed for C, H contents, in our laboratory, by using a Vario EL III CHNS elemental analyzer (Elementar Analysensysteme GmbH, Hanau, Germany). Tin content has been analyzed gravimetrically as SnO2 by treating the compound with a HNO3/H2SO4 mixture according to ref. 31 (Found: C, 33.96; H, 4.92; Sn 27.32. C13H23O9NSn requires: C, 34.24; H, 5.09; Sn, 26.03%).
Preparation of the dibutyltin(IV)-
-neuraminate
Bu2Sn(IV)NANA (3) has been synthesized with the analogous method for (2) in 1 : 1 H2Oethanol mixture, and recrystallized from cold ethanol. C19H35O9NSn, (Found: C, 41.57; H, 6.38; Sn, 20.19. C19H35O9NSn requires: C, 42.24; H, 6.54; Sn, 21.98%).
Discrepancies in the tin content are probably due to the behavior of these classes of carbohydrate derivatives which may give final products other than SnO2 after the thermal decomposition. In particular, according to a previous report,32 the thermal decomposition of organotin(IV) carbohydrate derivatives may give mixtures of SnO2, SnO, Sn and C as final products. An attempt to synthesize in situ the compound (2) into the NMR tube, gave the same NMR spectra obtained from the isolated solid sample.
Spectroscopy
All NMR spectra (1D 1H, 13C{1H} and 119Sn{1H}; 2D 1H1H COSY and NOESY, 1H13C HMQC and HMBC, 1H-119Sn HMBC) were recorded on a Bruker ARX-300 spectrometer at 300.13, 75.47 and 118.90 MHz, with spectral bandwidths of 8, 200 and 400 ppm for proton, carbon and tin, respectively. The spectra for all the samples were run at 298 K in D2O or DMSO-d6. D2O solutions were prepared by dissolving 11.3 mg of (1), 9.2 mg of (2) and 2.6 mg of (3) in 500 µL. Measured pD were 3.0, 3.5 and 2.5, respectively. Low solubility of (3) in D2O prevented 119Sn spectral resonance detection. Analogous NMR analysis was carried out in DMSO-d6 by dissolving 14.7, 13.6, 16 mg of (1), (2) and (3), respectively, in 500 µL of solvent. External reference for 1H and 13C were the resonances of 4,4-dimethyl 4-silapentane sodium sulfonate (DSS), while 119Sn spectra was referred to the tetramethyl-tin 119Sn resonance.
Computational methods
The DFT method with the three-parameters hybrid functional B3LYP33,34 was used for both geometry optimization and calculation of the NMR parameters. Geometry optimization for models referred to the tin complexes (see
Computational Study
section) as well as for tetramethyltin (TMSn) and 4,4-dimethyl 4-silapentane sodium sulfonate (DSS) (whose 119Sn and the methyl 13C cs were calculated as reference), was performed by employing the 6-31G(d,p) basis set for the C, H, N, O atoms and the all-electron Double Zeta Valence plus Polarization (DZVP) basis set for the Sn atom35 (contraction scheme: (18s14p9d)/[6s5p3d]). The calculation of the shielding constants (
) were performed on the optimized geometries in conjunction with the Gauge Independent Atomic Orbital (GIAO) formalism by using the Included Gauge Localized Orbital-II (IGLO-II) basis set for the tin atom36 (contraction scheme: (17s13p11d)/[12s11p9d]) and the 6-31G(d,p) basis set for the C, H, N, O atoms. An integration grid of 99 radial shells and 302 angular points was used.
119Sn and 13C cs were obtained by difference between the calculated shielding constants for the complexes and the corresponding value for the relative reference compounds according to
= (
ref.
). All calculations were performed by using the Gaussian 03 package.37
Experimental data show interesting differences in NANA coordination towards the diorganotin(IV) moieties in D2O and in DMSO-d6. In D2O, data state, beyond the carboxylate oxygen atom O1, the dynamic participation to the coordination from both O2 and O8 hydroxyl oxygen atoms. Fast proton catalyzed ligand exchange is supported by the washing of scalar coupling between 119Sn and NANA 1H/13C nuclei. On the other hand Sn-alkyl scalar coupling validate solvent coordination leading to penta- and/or hexa-coordinated species.
The lack of proton catalysis in DMSO-d6 freezes ligand exchange so that scalar coupling between 119Sn and NANA 1H/13C nuclei are observed as confirmed by the coupling of H3 protons with the tin atom. Data support O1 and O2 NANA chelation and also in this case, the CSnC angle suggest a solvent participation to the coordination leading to a penta- or hexa-coordinated tin.
DFT calculations have proved effective in matching the proposed structures in solution and comparison of calculated and experimental cs allowed the assignment of the exchanging species highlighting also the effect of the solvent. The calculation gave 13C cs which are in sensible agreement with the experimental values. However, since there are not very appreciable differences for the single C atom frequencies for free and coordinated ligands this parameter does not allow a choice among the different proposed models. On the contrary, the calculated 119Sn cs have been useful in the aforementioned choice. For the compound (2), by comparison of the experimental and calculated 119Sn cs, the A2 and B2 models proposed for the non-hydrolyzed structures showed the better agreement between experimental and calculated data. In these models the tin atom is formally hexa-coordinated due to the occurrence of two water molecules in its first coordination sphere confirming the participation of the solvent upon the tin coordination. For the same compound the HA1, HA2 and HB2 models proposed for the hydrolyzed species all seem acceptable even if the small amount of hydrolyzed species could not be detected in the NMR spectra. For compound (3), the lack of the experimental 119Sn cs in D2O did not allow any suitable assignment of the models to the proposed experimental structures.
Financial support by the Ministero dell'Istruzione, dell'Università e della Ricerca (M.I.U.R., CIP 2004059078_003), Roma, by the Università di Palermo (ORPA 041443) and by the Università di Messina is gratefully acknowledged. The electronic structure calculations were performed using the UK National Computational Software Service (EPSRC).
| 1 | F. G. Blix, A. Gottschalk and E. Klenk, Nature, 1957, 179, 1088 [Links]. | |
| 2 | G. M. W. Cook and R. W. Stoddart, in Surface Carbohydrates of the Eukaryotic Cell, Academic Press, New York, 1973, pp. 5697 |
|
| 3 | H. Wiegandt, in New Comprehensive Biochemistry: Glycolipids, ed. A. Neuberger and L. L. M. van Deenen, Elsevier, New York, 1985, vol. 10, pp. 2836 |
|
| 4 | D. A. Cheresh, M. D. Pierschbacker, M. A. Herzig and K. J. Mujoo, J. Cell Biol., 1986, 102, 688696 [Links]. | |
| 5 | G. R. Moe, S. Tan and D. M. Granoff, FEMS Immunol. Med. Microbiol., 1999, 26, 209226 [Links] and references therein. | |
| 6 | M. J. Kiefel and M. von Itzstein, Chem. Rev., 2002, 102, 471490 [Links]. | |
| 7 | E. H. Eylar, M. A. Mandof, O. V. Brody and J. L. Oncley, J. Biol. Chem., 1962, 237, 19922000 [Links]. | |
| 8 | R. Schauer, A. K. Shukla, C. Schröeder and E. Muller, Pure Appl. Chem., 1984, 56, 907 [Links]. | |
| 9 | T. Angata and A. Varki, Chem. Rev., 2002, 102, 439469 [Links]. | |
| 10 | J. P. Behr and J. M. Lehn, FEBS Lett., 1972, 22, 178180 [Links]. | |
| 11 | L. W. Jaques, E. L. Brown, J. M. Barrett, W. S. Brey, Jr. and W. Weltner, Jr., J. Biol. Chem., 1977, 252, 45334538 [Links]. | |
| 12 | M. Saladini, L. Menabue and E. Ferrari, J. Inorg. Biochem., 2002, 88, 6168 [Links]. | |
| 13 | R. Barbieri, L. Pellerito, G. Ruisi and M. T. Lo Giudice, Inorg. Chim. Acta, 1982, 6, 3940 |
|
| 14 | N. Bertazzi, G. Casella, P. D'Agati, T. Fiore, C. Mansueto, V. Mansueto, L. Nagy, C. Pellerito, L. Pellerito, I. D. Sciacca and M. Scopelliti, presented in part at the 4th Symposium on Pharmaco-Bio-Metallics, Lecce (IT), October, 2004 |
|
| 15 | B. Gyurcsik and L. Nagy, Coord. Chem. Rev., 2000, 203, 81149 [Links]. | |
| 16 | N. Bertazzi, G. Bruschetta, G. Casella, L. Pellerito, E. Rotondo and M. Scopelliti, Appl. Organomet. Chem., 2003, 17, 932939 [Links]. | |
| 17 | N. Buzás, L. Nagy, E. Kuzmann, A. Vértes and K. Burger, Inorg. Chim. Acta, 1998, 274, 167176 [Links]. | |
| 18 | T. B. Grindley, Adv. Carbohydr. Chem. Biochem., 1998, 53, 17142 [Links]. | |
| 19 | P. J. Smith and A. P. Tup iauskas, Annu. Rep. NMR Spectrosc., 1978, 8, 291370 [Links]. |
|
| 20 | R. Hani and R. A. Geanagel, Coord. Chem. Rev., 1982, 44, 229246 [Links]. | |
| 21 | B. Wrackmeyer, Annu. Rep. NMR Spectrosc., 1985, 16, 73186 [Links]. | |
| 22 | B. Wrackmeyer, Annu. Rep. NMR Spectrosc., 1999, 38, 203264 [Links]. | |
| 23 | R. Vivas-Reyes, F. De Proft, M. Biesemans, R. Willem and P. Geerlings, J. Phys. Chem. A, 2002, 106, 27532759 [Links]. | |
| 24 | P. Avalle, R. K. Harris and R. D. Fischer, Phys. Chem. Chem. Phys., 2002, 4, 35583561 [Links]; P. Avalle, R. K. Harris, P. B. Kardakov and P. J. Wilson, Phys. Chem. Chem. Phys., 2002, 4, 59255932 [Links]. | |
| 25 | A. Bagno, G. Casella and G. Saielli, J. Chem. Theor. Comput., 2006, 2, 3746 [Links]. | |
| 26 | A. Bagno, N. Bertazzi, G. Casella, L. Pellerito, G. Saielli and I. D. Sciacca, J. Phys. Org. Chem., 2006, 19, 874883 [Links]. | |
| 27 | C. A. G. Haasnoot, F. A. A. M. dew Leeuw and C. Altona, Tetrahedron, 1980, 36, 27832792 [Links]. | |
| 28 | T. P. Lockhart and W. F. Manders, Inorg. Chem., 1986, 25, 892895 [Links]. | |
| 29 | T. P. Lockhart, W. F. Manders and J. J. Zuckerman, J. Am. Chem. Soc., 1985, 107, 45474548 [Links]. | |
| 30 | J. A. Zubieta and J. J. Zuckerman, Prog. Inorg. Chem., 1978, 24, 251475 [Links]. | |
| 31 | W. P. Neumann, in The Organic Chemistry of Tin, ed. D. Seyferth, Interscience Publishers, London, 1970, pp. 211212 |
|
| 32 | J. D. Donaldson, S. G. Grimes, L. Pellerito, M. A. Girasolo, P. J. Smith, A. Cambria and M. Famà, Polyhedron, 1987, 6, 383386 [Links]. | |
| 33 | A. D. Becke, J. Chem. Phys., 1993, 98, 56485652 [Links]. | |
| 34 | C. Lee, W. Yang and R. G. Parr, Phys. Rev. B, 1988, 37, 785789 [Links]. | |
| 35 | N. Godbout, D. R. Salahub, J. Andzelm and E. Wimmer, Can. J. Chem., 1992, 70, 560571 [Links]. | |
| 36 | W. Kutzelnigg, U. Fleischer and M. Schindler, in NMR Basic Principles and Progress, Springer, Heidelberg, 1990, pp. 165262 |
|
| 37 | Gaussian 03, Revision C.01, Gaussian, Inc., Wallingford CT, 2004, M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, J. A. Montgomery, Jr., T. Vreven, K. N. Kudin, J. C. Burant, J. M. Millam, S. S. Iyengar, J. Tomasi, V. Barone, B. Mennucci, M. Cossi, G. Scalmani, N. Rega, G. A. Petersson, H. Nakatsuji,M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, M. Klene, X. Li, J. E. Knox, H. P. Hratchian, J. B. Cross, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, P. Y. Ayala,K. Morokuma, G. A. Voth, P. Salvador, J. J. Dannenberg, V. G. Zakrzewski, S. Dapprich, A. D. Daniels, M. C. Strain, O. Farkas, D. K. Malick, A. D. Rabuck, K. Raghavachari, J. B. Foresman, J. V. Ortiz, Q. Cui, A. G. Baboul, S. Clifford, J. Cioslowski, B. B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R. L. Martin, D. J. Fox, T. Keith, M. A. Al-Laham, C. Y. Peng, A. Nanayakkara, M. Challacombe, P. M. W. Gill, B. Johnson, W. Chen, M.
W. Wong, C. Gonzalez and J. A. Pople |
Footnote |
Electronic supplementary information (ESI) available: Relevant distances (pm) and angles (°) obtained for the optimized models; Calculated 119Sn and 13C NMR cs (ppm) for non-hydrolyzed and hydrolyzed Bu2SnNANA (3). See DOI: 10.1039/b616330k |
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