# Electronic Supplementary Material (ESI) for Chemical Communications # This journal is © The Royal Society of Chemistry 2011 data_global _journal_name_full Chem.Commun. _journal_coden_cambridge 0182 #TrackingRef '6031_web_deposit_cif_file_0_MikhailV.Barybin_1309324196.Barybin Ligand K08F.txt' _publ_contact_author ; Prof. Mikhail Barybin Department of Chemistry -- University of Kansas Malott Hall 1251 Wescoe Hall Dr, Rm 2010 Lawrence, KS 66045-7582 USA ; _publ_contact_author_email mbarybin@ku.edu _publ_contact_author_fax 1(785)8645396 _publ_contact_author_phone 1(785)8644106 loop_ _publ_author_name _publ_author_address B.M.Neal ; Department of Chemistry -- University of Kansas Malott Hall 1251 Wescoe Hall Dr, Rm 2010 Lawrence, KS 66045-7582 USA ; A.S.Vorushilov ; Department of Chemistry -- University of Kansas Malott Hall 1251 Wescoe Hall Dr, Rm 2010 Lawrence, KS 66045-7582 USA ; A.M.DeLarosa ; Department of Chemistry -- University of Kansas Malott Hall 1251 Wescoe Hall Dr, Rm 2010 Lawrence, KS 66045-7582 USA ; R.E.Robinson ; Department of Chemistry -- University of Kansas Malott Hall 1251 Wescoe Hall Dr, Rm 2010 Lawrence, KS 66045-7582 USA ; C.L.Berrie ; Department of Chemistry -- University of Kansas Malott Hall 1251 Wescoe Hall Dr, Rm 2010 Lawrence, KS 66045-7582 USA ; ; M.V.Barybin ; ; Department of Chemistry -- University of Kansas Malott Hall 1251 Wescoe Hall Dr, Rm 2010 Lawrence, KS 66045-7582 USA ; _publ_section_title ; Ancillary cyano substituents as convenient IR spectroscopic reporters for self-assembly of mercapto- and isocyanoazulenes on gold(111) <----- ; _publ_section_references ; International Tables for Crystallography, Vol A, 4th ed, Kluwer: Boston (1996). Data Collection: SMART Software Reference Manual (1998). Bruker-AXS, 5465 E. Cheryl Parkway, Madison, WI 53711-5373, USA. Data Reduction: SAINT Software Reference Manual (1998). Bruker-AXS, 6300 Enterprise Dr., Madison, WI 53719-1173, USA. G. M. Sheldrick (2000). SHELXTL Version 6.10 Reference Manual. Bruker-AXS, 5465 E. Cheryl Parkway, Madison, WI 53711-5373, USA. ; _publ_section_acknowledgements ; The authors thank the US National Science Foundation (grant CHE-0079282) and the University of Kansas for funds to purchase the x-ray equipment and computers used in this work. The structure was solved bt Dr. Victor W. Day. ; _publ_contact_author_name 'Prof. Mikhail Barybin' data_k08f _database_code_depnum_ccdc_archive 'CCDC 832003' #TrackingRef '6031_web_deposit_cif_file_0_MikhailV.Barybin_1309324196.Barybin Ligand K08F.txt' _audit_creation_method SHELXL-97 _chemical_name_systematic ; ? ; _chemical_name_common 2-mercapto-1,3-di(ethoxycarbonyl)azulene _chemical_melting_point ? _chemical_formula_moiety 'C16 H16 O4 S' _chemical_formula_sum 'C16 H16 O4 S' _chemical_formula_weight 304.35 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' _symmetry_cell_setting Triclinic _symmetry_space_group_name_H-M P-1 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' _cell_length_a 6.7819(10) _cell_length_b 9.9518(14) _cell_length_c 11.0663(16) _cell_angle_alpha 100.453(3) _cell_angle_beta 94.859(3) _cell_angle_gamma 103.049(3) _cell_volume 709.34(18) _cell_formula_units_Z 2 _cell_measurement_temperature 100(2) _cell_measurement_reflns_used 2984 _cell_measurement_theta_min 2.55 _cell_measurement_theta_max 30.38 _exptl_crystal_description 'Rectangular parallelepiped' _exptl_crystal_colour Orange _exptl_crystal_size_max 0.40 _exptl_crystal_size_mid 0.15 _exptl_crystal_size_min 0.11 _exptl_crystal_density_meas ? _exptl_crystal_density_diffrn 1.425 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 320 _exptl_absorpt_coefficient_mu 0.241 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_correction_T_min 0.632 _exptl_absorpt_correction_T_max 1.000 _exptl_absorpt_process_details 'SADABS (2000)' _exptl_special_details ; ? ; _diffrn_ambient_temperature 100(2) _diffrn_radiation_wavelength 0.71073 _diffrn_radiation_type MoK\a _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_monochromator graphite _diffrn_measurement_device_type 'Bruker SMART APEX CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_detector_area_resol_mean ? _diffrn_standards_number ? _diffrn_standards_interval_count ? _diffrn_standards_interval_time ? _diffrn_standards_decay_% 0.00 _diffrn_reflns_number 8429 _diffrn_reflns_av_R_equivalents 0.0530 _diffrn_reflns_av_sigmaI/netI 0.0609 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_k_min -13 _diffrn_reflns_limit_k_max 13 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_theta_min 2.55 _diffrn_reflns_theta_max 30.52 _reflns_number_total 4139 _reflns_number_gt 3495 _reflns_threshold_expression >2sigma(I) _computing_data_collection 'Bruker SMART' _computing_cell_refinement 'Bruker SAINT' _computing_data_reduction 'Bruker SAINT' _computing_structure_solution 'Bruker SHELXTL' _computing_structure_refinement 'Bruker SHELXTL' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _refine_special_details ; Refinement of F^2^ against ALL reflectionsexcept those that were flagged by the user for being in the beamstop. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > 2sigma(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. ; _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0788P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _atom_sites_solution_hydrogens geom _refine_ls_hydrogen_treatment refall _refine_ls_extinction_method none _refine_ls_extinction_coef ? _refine_ls_number_reflns 4139 _refine_ls_number_parameters 251 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.0671 _refine_ls_R_factor_gt 0.0555 _refine_ls_wR_factor_ref 0.1425 _refine_ls_wR_factor_gt 0.1357 _refine_ls_goodness_of_fit_ref 1.059 _refine_ls_restrained_S_all 1.059 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group S1 S 0.34326(7) 0.29546(4) 0.27791(4) 0.02174(14) Uani 1 1 d . . . H1S H 0.3943 0.3990 0.3592 0.078(10) Uiso 1 1 calc R . . O1 O 0.19785(19) -0.15903(12) 0.08290(11) 0.0212(3) Uani 1 1 d . . . O2 O 0.3299(2) 0.23680(12) 0.68334(11) 0.0212(3) Uani 1 1 d . . . O3 O 0.2719(2) 0.07047(14) 0.07602(13) 0.0294(3) Uani 1 1 d . . . O4 O 0.3481(2) 0.38769(13) 0.55515(12) 0.0252(3) Uani 1 1 d . . . C1 C 0.2498(2) 0.00751(16) 0.27130(16) 0.0169(3) Uani 1 1 d . . . C2 C 0.2913(2) 0.14644(17) 0.34241(16) 0.0172(3) Uani 1 1 d . . . C3 C 0.2901(2) 0.14192(17) 0.46972(16) 0.0168(3) Uani 1 1 d . . . C4 C 0.2339(3) -0.05383(18) 0.58906(17) 0.0186(3) Uani 1 1 d . . . H4 H 0.262(3) 0.014(2) 0.666(2) 0.027(6) Uiso 1 1 d . . . C5 C 0.2035(3) -0.19142(18) 0.60691(17) 0.0199(3) Uani 1 1 d . . . H5 H 0.207(3) -0.192(2) 0.692(2) 0.023(5) Uiso 1 1 d . . . C6 C 0.1783(3) -0.31626(18) 0.52125(18) 0.0214(4) Uani 1 1 d . . . H6 H 0.164(3) -0.396(2) 0.553(2) 0.029(6) Uiso 1 1 d . . . C7 C 0.1693(3) -0.33505(18) 0.39344(17) 0.0209(4) Uani 1 1 d . . . H7 H 0.135(3) -0.432(2) 0.347(2) 0.027(6) Uiso 1 1 d . . . C8 C 0.1873(3) -0.23439(17) 0.31980(17) 0.0188(3) Uani 1 1 d . . . H8 H 0.173(3) -0.268(2) 0.2379(19) 0.020(5) Uiso 1 1 d . . . C9 C 0.2501(2) -0.00221(17) 0.47997(16) 0.0158(3) Uani 1 1 d . . . C10 C 0.2251(2) -0.08778(17) 0.35364(15) 0.0161(3) Uani 1 1 d . . . C11 C 0.2421(3) -0.02098(18) 0.13636(17) 0.0190(3) Uani 1 1 d . . . C12 C 0.1874(3) -0.19071(19) -0.05140(17) 0.0228(4) Uani 1 1 d . . . H12A H 0.323(3) -0.156(2) -0.0712(18) 0.023(5) Uiso 1 1 d . . . H12B H 0.088(3) -0.153(2) -0.0869(19) 0.022(5) Uiso 1 1 d . . . C13 C 0.1273(3) -0.3492(2) -0.09062(19) 0.0256(4) Uani 1 1 d . . . H13A H 0.121(4) -0.376(3) -0.180(2) 0.041(7) Uiso 1 1 d . . . H13B H -0.004(4) -0.383(3) -0.069(2) 0.038(7) Uiso 1 1 d . . . H13C H 0.233(4) -0.388(3) -0.047(2) 0.042(7) Uiso 1 1 d . . . C14 C 0.3252(3) 0.26721(17) 0.56989(16) 0.0178(3) Uani 1 1 d . . . C15 C 0.3657(3) 0.35585(19) 0.78672(17) 0.0240(4) Uani 1 1 d . . . H15A H 0.501(3) 0.406(2) 0.7869(18) 0.020(5) Uiso 1 1 d . . . H15B H 0.260(3) 0.412(2) 0.774(2) 0.026(5) Uiso 1 1 d . . . C16 C 0.3390(3) 0.2952(2) 0.90082(18) 0.0255(4) Uani 1 1 d . . . H16A H 0.206(3) 0.237(2) 0.8994(18) 0.024(5) Uiso 1 1 d . . . H16B H 0.372(4) 0.369(3) 0.976(2) 0.039(7) Uiso 1 1 d . . . H16C H 0.427(4) 0.237(3) 0.910(2) 0.044(7) Uiso 1 1 d . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 S1 0.0320(3) 0.0094(2) 0.0244(2) 0.00700(15) 0.00106(17) 0.00455(16) O1 0.0325(7) 0.0118(6) 0.0192(6) 0.0029(4) 0.0030(5) 0.0056(5) O2 0.0335(7) 0.0108(6) 0.0200(6) 0.0018(4) 0.0036(5) 0.0077(5) O3 0.0498(9) 0.0145(6) 0.0239(7) 0.0074(5) 0.0046(6) 0.0055(6) O4 0.0394(8) 0.0096(6) 0.0277(7) 0.0052(5) 0.0045(6) 0.0069(5) C1 0.0198(8) 0.0087(7) 0.0224(8) 0.0043(6) 0.0018(6) 0.0036(6) C2 0.0181(8) 0.0100(7) 0.0242(8) 0.0057(6) 0.0022(6) 0.0037(6) C3 0.0196(8) 0.0090(7) 0.0220(8) 0.0038(6) 0.0019(6) 0.0039(6) C4 0.0214(8) 0.0131(8) 0.0223(9) 0.0048(6) 0.0034(6) 0.0048(6) C5 0.0250(8) 0.0143(8) 0.0211(8) 0.0065(6) 0.0030(7) 0.0039(6) C6 0.0253(9) 0.0112(7) 0.0291(9) 0.0094(7) 0.0023(7) 0.0038(6) C7 0.0255(9) 0.0091(7) 0.0272(9) 0.0042(6) 0.0013(7) 0.0030(6) C8 0.0233(8) 0.0105(7) 0.0215(9) 0.0034(6) 0.0007(6) 0.0026(6) C9 0.0156(7) 0.0100(7) 0.0226(8) 0.0045(6) 0.0024(6) 0.0041(6) C10 0.0174(7) 0.0106(7) 0.0207(8) 0.0038(6) 0.0022(6) 0.0042(6) C11 0.0225(8) 0.0119(7) 0.0230(8) 0.0045(6) 0.0020(6) 0.0045(6) C12 0.0336(10) 0.0161(8) 0.0192(8) 0.0040(6) 0.0029(7) 0.0073(7) C13 0.0379(11) 0.0165(8) 0.0226(9) 0.0018(7) 0.0018(8) 0.0094(8) C14 0.0208(8) 0.0105(7) 0.0232(8) 0.0042(6) 0.0030(6) 0.0055(6) C15 0.0360(10) 0.0122(8) 0.0228(9) -0.0003(6) 0.0038(7) 0.0070(7) C16 0.0310(10) 0.0217(9) 0.0232(9) 0.0036(7) 0.0035(7) 0.0060(8) _geom_special_details ; All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. ; loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag S1 C2 1.7388(17) . ? S1 H1S 1.2000 . ? O1 C11 1.348(2) . ? O1 C12 1.454(2) . ? O2 C14 1.343(2) . ? O2 C15 1.450(2) . ? O3 C11 1.215(2) . ? O4 C14 1.2164(19) . ? C1 C2 1.415(2) . ? C1 C10 1.423(2) . ? C1 C11 1.463(2) . ? C2 C3 1.418(2) . ? C3 C9 1.426(2) . ? C3 C14 1.470(2) . ? C4 C5 1.391(2) . ? C4 C9 1.398(2) . ? C4 H4 0.96(2) . ? C5 C6 1.386(2) . ? C5 H5 0.94(2) . ? C6 C7 1.387(3) . ? C6 H6 0.92(2) . ? C7 C8 1.393(2) . ? C7 H7 0.98(2) . ? C8 C10 1.397(2) . ? C8 H8 0.90(2) . ? C9 C10 1.473(2) . ? C12 C13 1.508(3) . ? C12 H12A 0.97(2) . ? C12 H12B 0.94(2) . ? C13 H13A 0.97(3) . ? C13 H13B 0.95(2) . ? C13 H13C 1.02(3) . ? C15 C16 1.503(3) . ? C15 H15A 0.94(2) . ? C15 H15B 1.02(2) . ? C16 H16A 0.95(2) . ? C16 H16B 0.98(3) . ? C16 H16C 0.93(3) . ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag C2 S1 H1S 109.5 . . ? C11 O1 C12 115.53(13) . . ? C14 O2 C15 116.12(13) . . ? C2 C1 C10 108.30(15) . . ? C2 C1 C11 121.89(14) . . ? C10 C1 C11 129.79(15) . . ? C1 C2 C3 109.49(14) . . ? C1 C2 S1 123.13(13) . . ? C3 C2 S1 127.35(13) . . ? C2 C3 C9 107.89(14) . . ? C2 C3 C14 124.18(14) . . ? C9 C3 C14 127.93(15) . . ? C5 C4 C9 129.92(17) . . ? C5 C4 H4 112.5(13) . . ? C9 C4 H4 117.2(13) . . ? C6 C5 C4 129.81(17) . . ? C6 C5 H5 120.1(14) . . ? C4 C5 H5 110.1(13) . . ? C5 C6 C7 127.98(16) . . ? C5 C6 H6 115.7(14) . . ? C7 C6 H6 116.3(14) . . ? C6 C7 C8 129.04(17) . . ? C6 C7 H7 116.7(13) . . ? C8 C7 H7 114.1(13) . . ? C7 C8 C10 130.01(17) . . ? C7 C8 H8 115.8(13) . . ? C10 C8 H8 114.2(13) . . ? C4 C9 C3 126.65(16) . . ? C4 C9 C10 126.03(15) . . ? C3 C9 C10 107.31(14) . . ? C8 C10 C1 125.93(16) . . ? C8 C10 C9 127.07(15) . . ? C1 C10 C9 107.00(14) . . ? O3 C11 O1 121.99(17) . . ? O3 C11 C1 123.75(16) . . ? O1 C11 C1 114.26(14) . . ? O1 C12 C13 106.23(15) . . ? O1 C12 H12A 107.3(12) . . ? C13 C12 H12A 109.0(13) . . ? O1 C12 H12B 109.8(13) . . ? C13 C12 H12B 109.8(13) . . ? H12A C12 H12B 114.3(17) . . ? C12 C13 H13A 109.6(15) . . ? C12 C13 H13B 109.1(15) . . ? H13A C13 H13B 108(2) . . ? C12 C13 H13C 108.2(14) . . ? H13A C13 H13C 111(2) . . ? H13B C13 H13C 111(2) . . ? O4 C14 O2 121.71(16) . . ? O4 C14 C3 125.08(16) . . ? O2 C14 C3 113.20(14) . . ? O2 C15 C16 106.32(15) . . ? O2 C15 H15A 104.8(13) . . ? C16 C15 H15A 112.0(12) . . ? O2 C15 H15B 109.0(12) . . ? C16 C15 H15B 110.0(12) . . ? H15A C15 H15B 114.3(17) . . ? C15 C16 H16A 113.5(12) . . ? C15 C16 H16B 111.4(14) . . ? H16A C16 H16B 109.4(18) . . ? C15 C16 H16C 111.1(15) . . ? H16A C16 H16C 105.2(19) . . ? H16B C16 H16C 106(2) . . ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag C10 C1 C2 C3 -1.05(19) . . . . ? C11 C1 C2 C3 -179.74(14) . . . . ? C10 C1 C2 S1 176.95(12) . . . . ? C11 C1 C2 S1 -1.7(2) . . . . ? C1 C2 C3 C9 0.85(19) . . . . ? S1 C2 C3 C9 -177.04(12) . . . . ? C1 C2 C3 C14 -179.25(15) . . . . ? S1 C2 C3 C14 2.9(3) . . . . ? C9 C4 C5 C6 -0.8(3) . . . . ? C4 C5 C6 C7 -2.8(3) . . . . ? C5 C6 C7 C8 1.5(3) . . . . ? C6 C7 C8 C10 2.1(3) . . . . ? C5 C4 C9 C3 -177.14(17) . . . . ? C5 C4 C9 C10 4.0(3) . . . . ? C2 C3 C9 C4 -179.35(16) . . . . ? C14 C3 C9 C4 0.8(3) . . . . ? C2 C3 C9 C10 -0.33(17) . . . . ? C14 C3 C9 C10 179.78(16) . . . . ? C7 C8 C10 C1 177.10(17) . . . . ? C7 C8 C10 C9 -1.9(3) . . . . ? C2 C1 C10 C8 -178.35(16) . . . . ? C11 C1 C10 C8 0.2(3) . . . . ? C2 C1 C10 C9 0.82(18) . . . . ? C11 C1 C10 C9 179.37(16) . . . . ? C4 C9 C10 C8 -2.1(3) . . . . ? C3 C9 C10 C8 178.86(16) . . . . ? C4 C9 C10 C1 178.72(16) . . . . ? C3 C9 C10 C1 -0.30(17) . . . . ? C12 O1 C11 O3 -0.3(2) . . . . ? C12 O1 C11 C1 179.53(14) . . . . ? C2 C1 C11 O3 0.7(3) . . . . ? C10 C1 C11 O3 -177.68(17) . . . . ? C2 C1 C11 O1 -179.10(14) . . . . ? C10 C1 C11 O1 2.5(3) . . . . ? C11 O1 C12 C13 -177.49(15) . . . . ? C15 O2 C14 O4 -0.6(2) . . . . ? C15 O2 C14 C3 179.51(14) . . . . ? C2 C3 C14 O4 4.2(3) . . . . ? C9 C3 C14 O4 -175.90(17) . . . . ? C2 C3 C14 O2 -175.88(15) . . . . ? C9 C3 C14 O2 4.0(2) . . . . ? C14 O2 C15 C16 173.31(15) . . . . ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A S1 H1S O4 1.20 2.24 3.0338(15) 121.0 . S1 H1S O4 1.20 2.40 3.4624(14) 145.9 2_666 _diffrn_measured_fraction_theta_max 0.955 _diffrn_reflns_theta_full 30.52 _diffrn_measured_fraction_theta_full 0.955 _refine_diff_density_max 0.682 _refine_diff_density_min -0.480 _refine_diff_density_rms 0.083