Supplementary Material (ESI) for Molecular BioSystems This journal is (c) The Royal Society of Chemistry, 2009 1 : Chemokine_signalling , TLR_signalling , CR_MR_other_signalling , signalling_molecules , Macrophage , T_cells , Activated_Dendritic_cells , Phagocytosis 2 : Phagolysosome_formation 3 : Antigen_processing 4 : Antigen_presentation 5 : Activated_phagocytic_cells , Pro_inflammatory_cytokines , Endothelial_cells , ROI , RNI , Cathelicidin , TC_Differentiation , Activated_T_cells , Th1_cells , Th2_cells , Tc_cells , CD1r_T_cells , Th1RC , Th2RC , TcRC , Eosinophils , Basophils , Activated_Neutrophils , Activated_Mast_cells , Apoptosis , Perforin_Granulysin , Fas_FasL_pathway , Inflammatory_molecules , IL_1 , IL_2 , IL_3 , IL_4 , IL_5 , IL_6 , IL_10 , IL_12 , IL_13 , IL_18 , GM_CSF , IFN_alpha , IFN_gamma , TNF_alpha , TNF_beta , TGF_beta , IL_8 6 : B_cell_signalling , Fibroblasts 7 : Bacteria 8 : ManLAM , LAM , PknG , PknE , SapM , LP_19kDa , Ag85CX , FAP , Urease , PIM , NuoG , LprG , BpoB , SodC , SodA , KatG , SecA2