Datasetexpr.class.cls#EGF_versus_CONTROL.class.cls#EGF_versus_CONTROL_repos
Phenotypeclass.cls#EGF_versus_CONTROL_repos
Upregulated in classEGF
GeneSetHALLMARK_DNA_REPAIR
Enrichment Score (ES)0.36843103
Normalized Enrichment Score (NES)1.6403146
Nominal p-value0.001572327
FDR q-value0.005391839
FWER p-Value0.073
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_DNA_REPAIR   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1FEN1na2512.0280.0046Yes
2ZNRD1na5241.7560.0058Yes
3UMPSna5261.7560.0212Yes
4PNPna5461.7420.0355Yes
5ERCC2na6511.6700.0447Yes
6PRIM1na6711.6600.0582Yes
7NME1na7641.6030.0675Yes
8ZWINTna8171.5820.0787Yes
9RFC2na8181.5820.0925Yes
10GTF2A2na9771.5200.0976Yes
11RAE1na10651.4900.1061Yes
12TYMSna10661.4900.1192Yes
13GTF2H1na10941.4810.1308Yes
14STX3na11331.4660.1417Yes
15POLA1na11371.4650.1544Yes
16NUDT21na12111.4370.1632Yes
17SNAPC5na12441.4280.1740Yes
18RFC3na13491.3930.1808Yes
19RFC4na14171.3720.1893Yes
20POLR2Ana14511.3630.1996Yes
21RAD52na15751.3270.2048Yes
22PCNAna17121.2910.2090Yes
23POLR1Cna17281.2890.2195Yes
24GMPR2na17971.2690.2271Yes
25IMPDH2na19891.2230.2278Yes
26CLP1na21051.1950.2323Yes
27SF3A3na21701.1850.2393Yes
28SSRP1na23781.1370.2384Yes
29ARL6IP1na23851.1360.2481Yes
30DDB2na24881.1130.2525Yes
31POLA2na25291.1050.2601Yes
32POLE4na25591.1000.2683Yes
33POLD1na26301.0890.2742Yes
34TAF13na26361.0880.2834Yes
35TAF1Cna26531.0840.2921Yes
36HPRT1na27031.0760.2990Yes
37TAF6na27111.0750.3081Yes
38GTF3C5na27341.0710.3163Yes
39DGUOKna27671.0660.3240Yes
40RFC5na28141.0580.3309Yes
41ERCC3na28811.0470.3366Yes
42POLR1Dna30411.0180.3372Yes
43RPA2na31281.0010.3415Yes
44POLHna32210.9820.3453Yes
45POLD3na32440.9790.3527Yes
46TAF9na32900.9710.3589Yes
47RAD51na34250.9480.3602Yes
48GTF2H3na36560.9130.3561Yes
49SMAD5na36800.9080.3629Yes
50DUTna37260.9000.3684Yes
51DGCR8na42650.8130.3473No
52NT5Cna44830.7800.3428No
53SAC3D1na45370.7730.3468No
54POLR2Kna46960.7500.3451No
55REV3Lna47650.7360.3480No
56POLR3Cna47790.7340.3538No
57POLR2Gna47970.7310.3593No
58LIG1na50380.7020.3529No
59RRM2Bna50440.7010.3588No
60ITPAna51140.6910.3612No
61POLLna51190.6910.3671No
62POLR2Dna53970.6500.3582No
63POLR2Cna57230.6060.3465No
64EIF1Bna57350.6050.3512No
65CSTF3na59220.5810.3466No
66NPR2na60340.5670.3457No
67NCBP2na61200.5520.3461No
68GTF2Bna61480.5480.3495No
69RPA3na62820.5300.3472No
70RALAna63710.5170.3471No
71POLR2Ena64010.5130.3501No
72SURF1na65350.4980.3475No
73ADAna65740.4930.3498No
74POM121na66560.4840.3498No
75TMED2na67190.4780.3508No
76SEC61A1na67340.4760.3542No
77RBX1na69550.4500.3466No
78DDB1na70410.4410.3460No
79NFX1na70870.4350.3475No
80BCAP31na71570.4270.3476No
81DCTN4na71950.4230.3494No
82CDAna75780.3760.3327No
83SRSF6na78780.3390.3200No
84BOLA2na79660.3290.3183No
85MRPL40na80360.3220.3175No
86SNAPC4na81580.3100.3139No
87GTF2H5na81760.3080.3157No
88ADRM1na85070.2710.3007No
89CANT1na85150.2690.3027No
90TSG101na87090.2450.2948No
91DAD1na88840.2260.2876No
92ZNF707na90150.2130.2827No
93ELLna91370.1980.2781No
94POLR2Hna91880.1930.2771No
95NUDT9na92660.1860.2747No
96TAF12na93720.1760.2708No
97TARBP2na93960.1720.2711No
98GUK1na94120.1700.2718No
99CCNOna96320.1460.2616No
100ERCC1na97550.1290.2563No
101ERCC5na105840.0400.2132No
102ERCC4na107140.0230.2066No
103UPF3Bna107210.0220.2065No
104APRTna107890.0150.2031No
105CMPK2na108620.0060.1994No
106POLBna11738-0.0910.1543No
107ERCC8na11985-0.1240.1425No
108RNMTna12192-0.1430.1329No
109POLR2Jna12320-0.1570.1276No
110BRF2na12359-0.1640.1271No
111SUPT5Hna12576-0.1950.1175No
112TAF10na12584-0.1960.1188No
113HCLS1na13062-0.2510.0960No
114VPS37Bna13365-0.2970.0828No
115AAASna13989-0.3760.0534No
116ADCY6na14106-0.3930.0507No
117GTF2F1na14192-0.4050.0498No
118TP53na14267-0.4170.0496No
119SDCBPna14589-0.4610.0368No
120NME4na14599-0.4630.0404No
121CETN2na14630-0.4670.0429No
122USP11na16082-0.700-0.0271No
123VPS28na16240-0.743-0.0288No
124MPGna16357-0.770-0.0281No
125AK1na16503-0.811-0.0286No
126GPX4na16614-0.837-0.0270No
127SUPT4H1na16698-0.856-0.0238No
128POLR2Ina16800-0.886-0.0213No
129AK3na17069-0.968-0.0269No
130POLR3GLna17071-0.969-0.0185No
131NME3na17119-0.983-0.0123No
132EDF1na17699-1.186-0.0323No
133COX17na18071-1.366-0.0397No
134PDE4Bna18287-1.482-0.0380No
135XPCna18373-1.542-0.0289No
136TK2na18425-1.599-0.0175No
137VPS37Dna18643-1.806-0.0131No
138BCAMna18802-2.079-0.0031No
139POLD4na19015-2.7150.0096No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_DNA_REPAIR   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_DNA_REPAIR: Random ES distribution   
Gene set null distribution of ES for HALLMARK_DNA_REPAIR