Datasetexpr.class.cls#EGF_versus_CONTROL.class.cls#EGF_versus_CONTROL_repos
Phenotypeclass.cls#EGF_versus_CONTROL_repos
Upregulated in classCONTROL
GeneSetHALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)-0.4666636
Normalized Enrichment Score (NES)-2.2168403
Nominal p-value0.0
FDR q-value3.3333336E-4
FWER p-Value0.001
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1OXTRna342.7940.0162No
2BDNFna1262.2610.0260No
3RGS4na1472.2140.0392No
4COL5A2na2731.9940.0455No
5DKK1na4181.8310.0497No
6TPM1na6161.6930.0503No
7SNAI2na7161.6320.0556No
8COL12A1na7631.6030.0635No
9FSTL1na10111.5110.0603No
10CTGFna10801.4860.0663No
11MCM7na10991.4790.0749No
12GADD45Bna12831.4170.0744No
13FBN1na13681.3880.0789No
14ABI3BPna19311.2400.0574No
15ADAM12na19371.2380.0651No
16COL16A1na20301.2120.0681No
17ECM2na20641.2050.0741No
18PMEPA1na21741.1840.0761No
19LRRC15na21821.1820.0833No
20FSTL3na24301.1270.0776No
21PVRna27841.0620.0659No
22TNFRSF12Ana30941.0080.0562No
23COL6A3na31171.0030.0615No
24TNFRSF11Bna32410.9790.0613No
25GLIPR1na39490.8610.0298No
26CD44na39540.8600.0351No
27LAMA2na42570.8150.0245No
28PCOLCE2na43410.8020.0253No
29CAP2na46630.7550.0133No
30GPX7na54820.641-0.0255No
31FERMT2na58070.596-0.0387No
32CALUna59980.571-0.0450No
33FBLN1na60250.567-0.0427No
34GADD45Ana61020.555-0.0431No
35NOTCH2na61440.549-0.0417No
36FASna62660.532-0.0446No
37BASP1na64230.511-0.0495No
38TGM2na64810.505-0.0493No
39ACTA2na67470.474-0.0601No
40PPIBna69350.452-0.0670No
41VIMna69890.448-0.0669No
42COL7A1na71270.430-0.0714No
43PFN2na76270.371-0.0952No
44MMP3na79320.334-0.1090No
45SDC1na79640.330-0.1085No
46VEGFCna80880.317-0.1129No
47VCANna85740.265-0.1366No
48COPAna86230.257-0.1375No
49MAGEE1na89010.223-0.1506No
50TGFBR3na89510.217-0.1518No
51TAGLNna90330.211-0.1547No
52ELNna92280.190-0.1636No
53MYLKna93440.178-0.1685No
54MYL9na95710.148-0.1794No
55MATN3na96710.142-0.1837No
56SGCBna97400.132-0.1864No
57QSOX1na101030.095-0.2048No
58MESTna101220.093-0.2052No
59INHBAna101500.088-0.2060No
60GPC1na102540.075-0.2109No
61NT5Ena105690.043-0.2272No
62GJA1na10996-0.003-0.2495No
63EFEMP2na11064-0.012-0.2529No
64COL4A2na11618-0.072-0.2815No
65NID2na11674-0.081-0.2839No
66COL4A1na11875-0.110-0.2937No
67ID2na11940-0.118-0.2963No
68SPARCna12049-0.132-0.3011No
69THBS2na12176-0.140-0.3068No
70CALD1na12366-0.165-0.3156No
71PLOD3na12442-0.177-0.3184No
72JUNna12605-0.199-0.3257No
73COL1A1na12777-0.227-0.3332No
74APLP1na13196-0.273-0.3534No
75COL8A2na13401-0.302-0.3621No
76WIPF1na13594-0.329-0.3701No
77TPM4na13876-0.362-0.3825No
78SERPINH1na13922-0.366-0.3825No
79PTX3na13978-0.374-0.3830No
80SNTB1na14027-0.382-0.3830No
81SPOCK1na14141-0.397-0.3864No
82CAPGna14567-0.458-0.4058No
83GEMna14920-0.503-0.4210No
84VCAM1na15075-0.525-0.4257No
85PMP22na15157-0.538-0.4265No
86CADM1na15381-0.579-0.4345No
87PLAURna15641-0.614-0.4441No
88IL15na15840-0.654-0.4503No
89MATN2na16030-0.692-0.4558No
90EMP3na16130-0.712-0.4564No
91LAMC1na16327-0.763-0.4617Yes
92DAB2na16390-0.779-0.4600Yes
93RHOBna16399-0.781-0.4554Yes
94LGALS1na16602-0.835-0.4606Yes
95TNCna16616-0.837-0.4559Yes
96COL5A1na16811-0.890-0.4603Yes
97MMP1na16900-0.921-0.4590Yes
98PDLIM4na16928-0.930-0.4545Yes
99ECM1na16989-0.949-0.4515Yes
100SLIT2na17135-0.990-0.4527Yes
101CXCL1na17379-1.069-0.4586Yes
102SERPINE2na17404-1.080-0.4529Yes
103TNFAIP3na17494-1.121-0.4504Yes
104FZD8na17554-1.133-0.4461Yes
105HTRA1na17558-1.135-0.4390Yes
106COL6A2na17567-1.138-0.4321Yes
107TGFB1na17599-1.148-0.4263Yes
108TIMP1na17600-1.148-0.4189Yes
109ITGAVna17601-1.149-0.4115Yes
110PLOD1na17650-1.167-0.4065Yes
111LOXL1na17682-1.178-0.4006Yes
112SDC4na17717-1.190-0.3947Yes
113PLOD2na17729-1.194-0.3876Yes
114PTHLHna17793-1.223-0.3830Yes
115LOXL2na17814-1.231-0.3761Yes
116TFPI2na17846-1.252-0.3697Yes
117TGFBIna17865-1.259-0.3625Yes
118SLC6A8na17923-1.288-0.3572Yes
119PCOLCEna17987-1.322-0.3520Yes
120CD59na17994-1.325-0.3438Yes
121ITGA5na18016-1.340-0.3362Yes
122WNT5Ana18031-1.345-0.3283Yes
123PDGFRBna18059-1.357-0.3210Yes
124CTHRC1na18114-1.382-0.3149Yes
125ITGB5na18154-1.402-0.3079Yes
126LOXna18158-1.403-0.2991Yes
127SCG2na18189-1.419-0.2915Yes
128ENO2na18286-1.481-0.2870Yes
129TPM2na18358-1.533-0.2808Yes
130IL32na18390-1.558-0.2724Yes
131LRP1na18393-1.561-0.2625Yes
132IGFBP3na18475-1.624-0.2563Yes
133SFRP1na18535-1.679-0.2486Yes
134EDIL3na18687-1.874-0.2444Yes
135IL6na18776-2.020-0.2360Yes
136COL1A2na18789-2.040-0.2235Yes
137ITGA2na18843-2.164-0.2124Yes
138NNMTna18846-2.171-0.1985Yes
139CDH11na18848-2.179-0.1845Yes
140TIMP3na18862-2.233-0.1708Yes
141FUCA1na18883-2.288-0.1571Yes
142BMP1na18897-2.311-0.1429Yes
143ITGB3na18931-2.380-0.1293Yes
144AREGna18983-2.586-0.1153Yes
145LAMC2na18985-2.588-0.0987Yes
146LAMA3na19037-2.819-0.0832Yes
147PRRX1na19045-2.882-0.0650Yes
148DPYSL3na19076-2.970-0.0475Yes
149SAT1na19139-3.506-0.0281Yes
150PRSS2na19188-4.8400.0005Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION: Random ES distribution   
Gene set null distribution of ES for HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION