Enrichment in phenotype: HYD (2 samples)
- 15 / 50 gene sets are upregulated in phenotype HYD
- 4 gene sets are significant at FDR < 25%
- 1 gene sets are significantly enriched at nominal pvalue < 1%
- 4 gene sets are significantly enriched at nominal pvalue < 5%
- Snapshot of enrichment results
- Detailed enrichment results in html format
- Detailed enrichment results in excel format (tab delimited text)
- Guide to interpret results
Enrichment in phenotype: CONTROL (2 samples)
- 35 / 50 gene sets are upregulated in phenotype CONTROL
- 30 gene sets are significantly enriched at FDR < 25%
- 19 gene sets are significantly enriched at nominal pvalue < 1%
- 26 gene sets are significantly enriched at nominal pvalue < 5%
- Snapshot of enrichment results
- Detailed enrichment results in html format
- Detailed enrichment results in excel format (tab delimited text)
- Guide to interpret results
Dataset details
- The dataset has 19199 features (genes)
- No probe set => gene symbol collapsing was requested, so all 19199 features were used
Gene set details
- Gene set size filters (min=15, max=500) resulted in filtering out 0 / 50 gene sets
- The remaining 50 gene sets were used in the analysis
- List of gene sets used and their sizes (restricted to features in the specified dataset)
Gene markers for the HYD versus CONTROL comparison
- The dataset has 19199 features (genes)
- # of markers for phenotype HYD: 10461 (54.5% ) with correlation area 57.8%
- # of markers for phenotype CONTROL: 8738 (45.5% ) with correlation area 42.2%
- Detailed rank ordered gene list for all features in the dataset
- Heat map and gene list correlation profile for all features in the dataset
Global statistics and plots
Comments
- There were duplicate row identifiers in the specified dataset. One id was arbitarilly choosen. Details are below
Generally, this is OK, but if you want to avoid this automagic, edit your dataset so that all row ids are unique
# of row ids in original dataset: 19263
# of row UNIQUE ids in original dataset: 19199
# The duplicates were
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
Y_RNA
U3
ELFN2
TMSB15B
U1
BMS1P4
COG8
U1
pRNA
U2
U1
7SK
U2
U2
H2BFS
U2
pRNA
U2
U1
U2
pRNA
Y_RNA
Y_RNA
pRNA
U2
Metazoa_SRP
Metazoa_SRP
Metazoa_SRP
Y_RNA
pRNA
U2
U1
U2
U1
U2
U2
pRNA
MATR3
- Timestamp used as random seed: 1545201081533