Datasetexpr.class.cls#HYDEGF_versus_CONTROL.class.cls#HYDEGF_versus_CONTROL_repos
Phenotypeclass.cls#HYDEGF_versus_CONTROL_repos
Upregulated in classCONTROL
GeneSetHALLMARK_TNFA_SIGNALING_VIA_NFKB
Enrichment Score (ES)-0.38366622
Normalized Enrichment Score (NES)-1.8173795
Nominal p-value0.0
FDR q-value0.0011519607
FWER p-Value0.011
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_TNFA_SIGNALING_VIA_NFKB   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1FOSBna04.4100.0258No
2FJX1na713.1180.0403No
3EDN1na1662.6810.0511No
4ATF3na4732.1540.0476No
5PTGER4na5112.1050.0579No
6GADD45Bna5242.0960.0695No
7CCNL1na5772.0370.0787No
8TNFSF9na7381.8750.0813No
9PPP1R15Ana10511.6530.0745No
10IER5na12761.5230.0717No
11EHD1na12971.5160.0795No
12ID2na13771.4790.0840No
13PMEPA1na19641.2770.0606No
14NR4A1na19771.2730.0674No
15MAP2K3na21991.2110.0629No
16FOSna22151.2070.0692No
17PLK2na22451.1970.0746No
18FOSL1na24661.1350.0697No
19NR4A3na24681.1350.0763No
20CCND1na26841.0840.0713No
21GADD45Ana27981.0520.0715No
22F3na29571.0160.0692No
23NFAT5na29621.0140.0749No
24IRS2na30620.9880.0755No
25DUSP1na32300.9540.0723No
26SIK1na37810.8500.0483No
27MYCna43140.7640.0248No
28TNIP2na43450.7590.0277No
29MAFFna47190.7030.0122No
30TIPARPna47700.6920.0136No
31SLC2A6na48920.6690.0111No
32PER1na50100.6510.0088No
33LIFna51470.6290.0053No
34CD44na52930.6070.0012No
35STAT5Ana54010.590-0.0009No
36HES1na56220.558-0.0092No
37JUNna56420.555-0.0070No
38PLAUna56960.547-0.0066No
39FUT4na59810.505-0.0186No
40SMAD3na60560.496-0.0195No
41MAP3K8na60690.493-0.0173No
42DENND5Ana61750.479-0.0200No
43SPHK1na61820.478-0.0175No
44TRIP10na61980.476-0.0155No
45IL7Rna63750.455-0.0221No
46KLF2na64170.447-0.0217No
47CLCF1na72120.342-0.0614No
48KDM6Bna72660.334-0.0622No
49IL18na74820.306-0.0718No
50ETS2na75270.301-0.0723No
51EGR3na77490.271-0.0823No
52KLF4na79140.254-0.0895No
53LDLRna80200.241-0.0936No
54SGK1na80390.239-0.0931No
55NFKB1na83330.205-0.1073No
56RCAN1na87030.163-0.1258No
57BIRC2na96330.057-0.1743No
58IFIT2na98620.027-0.1861No
59SERPINB2na99030.024-0.1881No
60MCL1na100070.019-0.1934No
61IFIH1na100110.019-0.1934No
62LAMB3na100150.019-0.1935No
63EGR1na100790.009-0.1968No
64YRDCna10328-0.026-0.2096No
65HBEGFna10340-0.028-0.2101No
66CEBPBna10406-0.036-0.2133No
67IL15RAna10423-0.038-0.2139No
68TUBB2Ana10631-0.057-0.2244No
69CD83na10860-0.087-0.2359No
70TLR2na10870-0.089-0.2359No
71IRF1na11060-0.115-0.2451No
72IER2na11245-0.129-0.2540No
73RIPK2na11399-0.146-0.2612No
74RHOBna11865-0.214-0.2844No
75FOSL2na12155-0.238-0.2982No
76RELBna12163-0.239-0.2972No
77CFLARna12192-0.242-0.2973No
78RNF19Bna12235-0.251-0.2980No
79SOCS3na12654-0.306-0.3182No
80TGIF1na13124-0.357-0.3408No
81TNCna13218-0.374-0.3435No
82NINJ1na13435-0.408-0.3524No
83MXD1na13508-0.414-0.3538No
84NFKB2na13528-0.418-0.3524No
85KLF6na13608-0.426-0.3540No
86SNNna13639-0.432-0.3531No
87NFKBIEna13693-0.440-0.3533No
88ZFP36na13904-0.472-0.3616No
89SQSTM1na13980-0.486-0.3627No
90BTG2na14115-0.493-0.3668No
91RELAna14142-0.496-0.3653No
92PLAURna14166-0.503-0.3636No
93G0S2na14238-0.511-0.3643No
94CCL2na14503-0.557-0.3749No
95INHBAna14670-0.585-0.3802Yes
96BTG3na14693-0.589-0.3780Yes
97GCH1na14797-0.603-0.3799Yes
98TNFna14846-0.611-0.3788Yes
99PTPREna14865-0.614-0.3762Yes
100DNAJB4na14878-0.616-0.3732Yes
101CDKN1Ana14882-0.616-0.3697Yes
102CXCL10na14952-0.628-0.3697Yes
103RELna14989-0.631-0.3679Yes
104ATP2B1na15051-0.643-0.3674Yes
105PFKFB3na15066-0.646-0.3643Yes
106EIF1na15103-0.654-0.3624Yes
107TNFAIP8na15172-0.664-0.3621Yes
108EGR2na15282-0.684-0.3638Yes
109TNIP1na15329-0.692-0.3622Yes
110F2RL1na15344-0.696-0.3589Yes
111TRIB1na15420-0.704-0.3587Yes
112MARCKSna15423-0.704-0.3547Yes
113NFE2L2na15575-0.737-0.3583Yes
114CXCL2na15653-0.754-0.3579Yes
115PHLDA2na15829-0.788-0.3625Yes
116NFIL3na15878-0.797-0.3604Yes
117PDLIM5na15884-0.799-0.3560Yes
118KLF9na15904-0.803-0.3523Yes
119JUNBna15969-0.814-0.3509Yes
120TNFRSF9na16000-0.819-0.3477Yes
121ZC3H12Ana16069-0.838-0.3464Yes
122SERPINB8na16076-0.839-0.3418Yes
123CSF2na16092-0.842-0.3376Yes
124JAG1na16098-0.843-0.3330Yes
125NFKBIAna16276-0.892-0.3371Yes
126IL1Ana16315-0.902-0.3338Yes
127ICOSLGna16433-0.928-0.3345Yes
128CEBPDna16551-0.957-0.3351Yes
129CXCL1na16603-0.969-0.3321Yes
130NR4A2na16791-1.024-0.3359Yes
131BHLHE40na16798-1.027-0.3302Yes
132PNRC1na16832-1.038-0.3259Yes
133TNFAIP3na16896-1.053-0.3231Yes
134KLF10na16932-1.064-0.3187Yes
135TSC22D1na16950-1.072-0.3133Yes
136TRAF1na16954-1.073-0.3072Yes
137TAP1na16995-1.089-0.3029Yes
138BCL6na17079-1.109-0.3008Yes
139ICAM1na17147-1.127-0.2977Yes
140DUSP5na17173-1.134-0.2924Yes
141PDE4Bna17197-1.143-0.2870Yes
142BCL3na17353-1.200-0.2881Yes
143CXCL3na17374-1.206-0.2821Yes
144PANX1na17396-1.213-0.2761Yes
145GEMna17445-1.234-0.2714Yes
146DDX58na17467-1.244-0.2652Yes
147EFNA1na17471-1.245-0.2581Yes
148ZBTB10na17658-1.317-0.2602Yes
149DRAM1na17740-1.352-0.2566Yes
150BTG1na17748-1.358-0.2490Yes
151DUSP4na17837-1.409-0.2454Yes
152PTX3na17871-1.426-0.2388Yes
153ABCA1na17887-1.432-0.2312Yes
154PHLDA1na17992-1.481-0.2280Yes
155PTGS2na17994-1.483-0.2194Yes
156B4GALT1na18015-1.493-0.2117Yes
157GFPT2na18069-1.525-0.2056Yes
158TANKna18094-1.545-0.1978Yes
159LITAFna18114-1.555-0.1897Yes
160IL1Bna18115-1.556-0.1806Yes
161IL23Ana18181-1.597-0.1747Yes
162IL6na18227-1.619-0.1676Yes
163B4GALT5na18251-1.640-0.1592Yes
164SPSB1na18303-1.685-0.1521Yes
165CCL20na18309-1.693-0.1424Yes
166IFNGR2na18361-1.722-0.1350Yes
167IL6STna18442-1.792-0.1288Yes
168BMP2na18629-1.962-0.1271Yes
169SDC4na18719-2.074-0.1196Yes
170AREGna18856-2.288-0.1134Yes
171CCRL2na18863-2.300-0.1003Yes
172BIRC3na18942-2.435-0.0901Yes
173NAMPTna18985-2.547-0.0774Yes
174SOD2na18995-2.569-0.0629Yes
175SLC2A3na19022-2.648-0.0488Yes
176CXCL11na19056-2.745-0.0345Yes
177SAT1na19134-3.131-0.0202Yes
178KYNUna19189-4.0240.0005Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_TNFA_SIGNALING_VIA_NFKB   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_TNFA_SIGNALING_VIA_NFKB: Random ES distribution   
Gene set null distribution of ES for HALLMARK_TNFA_SIGNALING_VIA_NFKB