Datasetexpr.class.cls#HYD_versus_CONTROL.class.cls#HYD_versus_CONTROL_repos
Phenotypeclass.cls#HYD_versus_CONTROL_repos
Upregulated in classCONTROL
GeneSetHALLMARK_DNA_REPAIR
Enrichment Score (ES)-0.33165753
Normalized Enrichment Score (NES)-1.5192845
Nominal p-value0.0
FDR q-value0.01884876
FWER p-Value0.108
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_DNA_REPAIR   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1SNAPC4na5962.222-0.0104No
2ELLna6312.1750.0083No
3RAD52na8981.9520.0127No
4DGCR8na9251.9290.0294No
5ZNF707na9661.8970.0452No
6VPS37Dna17241.4800.0193No
7ADAna19381.3920.0212No
8ADCY6na21601.2920.0218No
9STX3na22601.2540.0284No
10POM121na23971.2090.0326No
11TAF1Cna24841.1790.0392No
12XPCna26771.1240.0397No
13POLR2Ana27001.1140.0490No
14SUPT5Hna30311.0290.0413No
15VPS28na30371.0270.0507No
16TAF6na31391.0020.0548No
17GUK1na32870.9670.0562No
18POLR2Ena33330.9580.0629No
19NPR2na34540.9270.0653No
20ERCC3na36000.8940.0661No
21ERCC2na36280.8860.0730No
22DDB2na36760.8750.0787No
23POLD1na38720.8390.0764No
24LIG1na39130.8300.0821No
25POLA2na40050.8110.0849No
26GTF3C5na43710.7380.0727No
27SURF1na48790.6450.0522No
28AK1na49270.6380.0557No
29CCNOna51020.6130.0523No
30NFX1na52080.5980.0524No
31POLLna53690.5740.0494No
32SNAPC5na55400.5460.0456No
33ADRM1na58900.5010.0320No
34SAC3D1na62530.4510.0173No
35TARBP2na65090.4150.0078No
36RAE1na65690.4070.0085No
37GTF2F1na67590.3850.0022No
38NME3na71280.344-0.0138No
39ZWINTna73320.322-0.0215No
40ITPAna76330.287-0.0345No
41POLHna77670.278-0.0389No
42POLR2Hna79210.259-0.0445No
43PRIM1na79680.252-0.0445No
44REV3Lna85680.197-0.0741No
45POLD4na86640.184-0.0773No
46NME4na90080.153-0.0939No
47CANT1na90120.153-0.0926No
48TK2na90520.147-0.0933No
49POLR2Dna95910.091-0.1207No
50RAD51na96120.087-0.1209No
51TYMSna98170.062-0.1310No
52RFC5na98220.061-0.1307No
53BCAMna98320.060-0.1306No
54ERCC5na98590.057-0.1314No
55POLE4na99620.044-0.1363No
56TAF13na101070.028-0.1436No
57POLA1na101080.027-0.1434No
58CMPK2na102610.015-0.1512No
59NT5Cna10664-0.025-0.1721No
60EDF1na10719-0.031-0.1746No
61FEN1na10780-0.035-0.1774No
62RFC2na10894-0.053-0.1828No
63GMPR2na11050-0.072-0.1903No
64POLD3na11139-0.085-0.1941No
65POLR1Cna11356-0.097-0.2045No
66APRTna11391-0.100-0.2054No
67TAF10na11507-0.112-0.2104No
68NME1na11542-0.117-0.2111No
69USP11na11584-0.124-0.2120No
70VPS37Bna11608-0.127-0.2121No
71UPF3Bna11682-0.136-0.2146No
72TAF12na11890-0.162-0.2240No
73POLR3Cna12125-0.190-0.2344No
74BOLA2na12374-0.222-0.2454No
75SRSF6na12773-0.255-0.2639No
76UMPSna12776-0.255-0.2616No
77BCAP31na12908-0.272-0.2659No
78CLP1na12945-0.277-0.2652No
79MPGna12981-0.281-0.2644No
80RFC3na13005-0.284-0.2629No
81SSRP1na13070-0.294-0.2635No
82ZNRD1na13151-0.307-0.2648No
83POLR2Gna13421-0.341-0.2757No
84RBX1na13530-0.357-0.2780No
85SEC61A1na13535-0.358-0.2749No
86GTF2H1na13546-0.359-0.2720No
87SF3A3na14111-0.430-0.2976No
88RFC4na14127-0.430-0.2943No
89RALAna14157-0.435-0.2917No
90GPX4na14284-0.460-0.2940No
91GTF2A2na14494-0.489-0.3004No
92POLR2Jna14568-0.501-0.2995No
93AAASna14672-0.519-0.3000No
94SMAD5na14734-0.528-0.2983No
95DDB1na15337-0.624-0.3240No
96CDAna15484-0.647-0.3256Yes
97PDE4Bna15522-0.656-0.3214Yes
98POLR2Kna15545-0.661-0.3163Yes
99DGUOKna15592-0.666-0.3125Yes
100AK3na15863-0.717-0.3199Yes
101NUDT21na15890-0.721-0.3145Yes
102PCNAna15928-0.728-0.3096Yes
103POLR3GLna15935-0.730-0.3030Yes
104NUDT9na16157-0.780-0.3073Yes
105RPA3na16182-0.784-0.3012Yes
106PNPna16242-0.798-0.2968Yes
107ERCC1na16348-0.820-0.2946Yes
108GTF2H3na16351-0.823-0.2870Yes
109IMPDH2na16371-0.826-0.2802Yes
110NCBP2na16490-0.851-0.2784Yes
111ARL6IP1na16502-0.855-0.2709Yes
112HCLS1na16552-0.866-0.2654Yes
113MRPL40na16588-0.869-0.2590Yes
114POLR1Dna16656-0.887-0.2542Yes
115TP53na16860-0.944-0.2560Yes
116TAF9na17174-1.039-0.2626Yes
117POLR2Cna17326-1.093-0.2603Yes
118RNMTna17332-1.096-0.2502Yes
119GTF2H5na17333-1.097-0.2399Yes
120BRF2na17497-1.152-0.2377Yes
121DUTna17602-1.198-0.2319Yes
122POLBna17649-1.221-0.2228Yes
123RRM2Bna17979-1.367-0.2272Yes
124RPA2na18162-1.475-0.2229Yes
125GTF2Bna18268-1.540-0.2139Yes
126DCTN4na18275-1.548-0.1997Yes
127POLR2Ina18515-1.718-0.1961Yes
128ERCC4na18633-1.825-0.1851Yes
129ERCC8na18672-1.868-0.1695Yes
130TMED2na18685-1.879-0.1525Yes
131SDCBPna18755-1.959-0.1377Yes
132EIF1Bna18770-1.974-0.1199Yes
133CSTF3na18796-2.010-0.1023Yes
134COX17na18860-2.099-0.0859Yes
135TSG101na18862-2.104-0.0662Yes
136CETN2na18875-2.131-0.0468Yes
137HPRT1na18898-2.164-0.0276Yes
138DAD1na18951-2.264-0.0091Yes
139SUPT4H1na18999-2.3380.0104Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_DNA_REPAIR   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_DNA_REPAIR: Random ES distribution   
Gene set null distribution of ES for HALLMARK_DNA_REPAIR