Datasetexpr.class.cls#HYD_versus_CONTROL.class.cls#HYD_versus_CONTROL_repos
Phenotypeclass.cls#HYD_versus_CONTROL_repos
Upregulated in classHYD
GeneSetHALLMARK_TNFA_SIGNALING_VIA_NFKB
Enrichment Score (ES)0.2222426
Normalized Enrichment Score (NES)0.9081915
Nominal p-value0.68053854
FDR q-value0.8936127
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_TNFA_SIGNALING_VIA_NFKB   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1MAFFna4752.376-0.0030Yes
2IER5na7192.0980.0036Yes
3MAP3K8na10591.8330.0027Yes
4SIK1na10861.8110.0181Yes
5DUSP1na13641.6450.0187Yes
6ID2na13831.6370.0329Yes
7PPP1R15Ana15611.5460.0379Yes
8EHD1na16871.4950.0451Yes
9TNIP2na17791.4520.0538Yes
10IRS2na18211.4350.0649Yes
11STAT5Ana18891.4090.0744Yes
12PTGER4na19031.4060.0867Yes
13FOSBna19571.3790.0966Yes
14GADD45Bna19721.3750.1086Yes
15JUNna19921.3660.1202Yes
16GADD45Ana24241.2000.1086Yes
17ATF3na25831.1500.1110Yes
18MAP2K3na26281.1350.1191Yes
19TRIP10na26761.1240.1271Yes
20NR4A1na26991.1160.1362Yes
21TNFSF9na28481.0720.1383Yes
22SMAD3na28961.0640.1457Yes
23HES1na32530.9760.1360Yes
24SPHK1na34520.9270.1342Yes
25NFKB1na36680.8780.1310Yes
26FOSL1na37130.8680.1367Yes
27DENND5Ana37610.8560.1421Yes
28CLCF1na37650.8560.1499Yes
29MYCna37710.8540.1575Yes
30PER1na38220.8460.1627Yes
31SLC2A6na38510.8420.1690Yes
32CCNL1na39190.8280.1731Yes
33FJX1na39770.8160.1777Yes
34NR4A3na39950.8130.1843Yes
35PMEPA1na43200.7480.1742Yes
36CD83na43240.7470.1809Yes
37PLK2na44740.7210.1797Yes
38ZBTB10na46060.6920.1792Yes
39SOCS3na46530.6840.1832Yes
40KDM6Bna47050.6750.1867Yes
41ICOSLGna47830.6620.1888Yes
42MARCKSna48310.6520.1923Yes
43EDN1na48380.6510.1980Yes
44BMP2na48910.6430.2012Yes
45CFLARna49650.6330.2033Yes
46SERPINB2na49960.6270.2075Yes
47LIFna50940.6140.2080Yes
48LDLRna51350.6080.2116Yes
49RNF19Bna53740.5730.2043Yes
50NFAT5na53940.5710.2086Yes
51TIPARPna54380.5630.2116Yes
52HBEGFna55670.5420.2098Yes
53FUT4na55700.5410.2147Yes
54IRF1na56480.5330.2156Yes
55RELBna58350.5090.2105Yes
56EGR1na59340.4960.2100Yes
57PANX1na59410.4950.2142Yes
58EGR3na60130.4830.2149Yes
59GCH1na61570.4630.2117Yes
60ETS2na61640.4620.2156Yes
61FOSna61670.4610.2198Yes
62NFKB2na62040.4580.2221Yes
63PTGS2na63250.4400.2199Yes
64PTX3na63580.4350.2222Yes
65CEBPBna68390.3790.2005No
66CXCL10na68900.3720.2013No
67TNFAIP3na69800.3640.2000No
68SQSTM1na70120.3590.2017No
69IL18na70270.3560.2042No
70CXCL3na70310.3550.2074No
71KLF4na71850.3410.2025No
72IL6na72440.3330.2025No
73TNFna72580.3310.2049No
74CXCL2na74370.3140.1984No
75ZC3H12Ana74640.3110.1999No
76CCND1na74940.3080.2012No
77TNIP1na75390.3000.2017No
78FOSL2na76390.2860.1991No
79BTG2na77020.2840.1985No
80MCL1na77290.2840.1998No
81KLF2na77720.2760.2001No
82CXCL1na78140.2700.2005No
83TRAF1na83590.2120.1738No
84LAMB3na86100.1910.1624No
85IL23Ana86210.1900.1637No
86NFKBIEna87780.1700.1570No
87PFKFB3na88640.1570.1540No
88TNCna90350.1490.1465No
89F3na90900.1420.1449No
90SGK1na91000.1410.1458No
91KYNUna91280.1370.1456No
92IL1Bna91360.1360.1465No
93RHOBna92500.1240.1417No
94NR4A2na93290.1120.1386No
95IL1Ana96510.0800.1225No
96RCAN1na96640.0780.1226No
97CEBPDna97270.0720.1200No
98PTPREna98440.0590.1144No
99IL15RAna99090.0530.1116No
100ICAM1na99490.0460.1099No
101ABCA1na101210.0260.1012No
102BCL6na101500.0220.0999No
103EGR2na10492-0.0040.0820No
104BCL3na10566-0.0120.0783No
105NINJ1na10608-0.0170.0763No
106ZFP36na10619-0.0190.0759No
107TAP1na10646-0.0220.0748No
108TGIF1na10654-0.0240.0746No
109DUSP5na10948-0.0590.0598No
110IER2na11016-0.0680.0569No
111JUNBna11042-0.0710.0562No
112CD44na11081-0.0750.0549No
113KLF10na11366-0.0990.0409No
114PLAURna11509-0.1120.0345No
115PLAUna11513-0.1130.0354No
116YRDCna11535-0.1170.0353No
117CDKN1Ana11746-0.1450.0256No
118G0S2na11856-0.1590.0214No
119RELna12166-0.1950.0069No
120TNFRSF9na12175-0.1970.0083No
121NFKBIAna12331-0.2180.0022No
122CCL2na12375-0.2220.0020No
123DUSP4na12770-0.255-0.0164No
124CCL20na12777-0.255-0.0143No
125TLR2na12836-0.262-0.0150No
126KLF6na12855-0.265-0.0135No
127SNNna12897-0.271-0.0131No
128PHLDA2na12946-0.277-0.0131No
129EFNA1na13011-0.285-0.0138No
130BIRC2na13013-0.285-0.0112No
131CSF2na13029-0.288-0.0093No
132CXCL11na13037-0.289-0.0070No
133RELAna13082-0.296-0.0066No
134DRAM1na13242-0.315-0.0121No
135IFIH1na13280-0.322-0.0110No
136SPSB1na13363-0.332-0.0123No
137GFPT2na13386-0.335-0.0103No
138B4GALT1na13415-0.340-0.0087No
139SDC4na13470-0.349-0.0083No
140MXD1na13509-0.354-0.0070No
141BHLHE40na13518-0.356-0.0042No
142INHBAna13523-0.357-0.0011No
143KLF9na13547-0.3590.0010No
144SAT1na13558-0.3620.0039No
145SOD2na13651-0.3780.0025No
146ATP2B1na14037-0.422-0.0138No
147TUBB2Ana14107-0.429-0.0135No
148TRIB1na14135-0.432-0.0109No
149SERPINB8na14190-0.440-0.0097No
150TSC22D1na14324-0.468-0.0124No
151PNRC1na14528-0.496-0.0185No
152PHLDA1na14990-0.561-0.0375No
153B4GALT5na15298-0.617-0.0480No
154DNAJB4na15495-0.649-0.0523No
155PDE4Bna15522-0.656-0.0476No
156IL7Rna15528-0.657-0.0418No
157IFNGR2na15618-0.672-0.0402No
158BTG1na15833-0.711-0.0449No
159JAG1na15843-0.713-0.0388No
160EIF1na15919-0.727-0.0360No
161NFIL3na16230-0.795-0.0450No
162TANKna16289-0.808-0.0406No
163RIPK2na16616-0.878-0.0496No
164SLC2A3na16869-0.946-0.0541No
165F2RL1na16911-0.960-0.0474No
166BTG3na16989-0.983-0.0423No
167TNFAIP8na17185-1.045-0.0429No
168BIRC3na17468-1.140-0.0472No
169GEMna17475-1.142-0.0370No
170PDLIM5na17595-1.194-0.0322No
171NFE2L2na17653-1.221-0.0239No
172LITAFna17716-1.247-0.0157No
173DDX58na18014-1.392-0.0184No
174IFIT2na18078-1.429-0.0085No
175AREGna18122-1.4560.0027No
176NAMPTna18342-1.5960.0059No
177IL6STna18809-2.0320.0002No
178CCRL2na18912-2.1890.0150No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_TNFA_SIGNALING_VIA_NFKB   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_TNFA_SIGNALING_VIA_NFKB: Random ES distribution   
Gene set null distribution of ES for HALLMARK_TNFA_SIGNALING_VIA_NFKB