Datasetexpr.class.cls#HYDEGF_versus_CONTROL.class.cls#HYDEGF_versus_CONTROL_repos
Phenotypeclass.cls#HYDEGF_versus_CONTROL_repos
Upregulated in classCONTROL
GeneSetHALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)-0.42014992
Normalized Enrichment Score (NES)-1.949935
Nominal p-value0.0
FDR q-value2.926038E-4
FWER p-Value0.002
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1EFEMP2na2472.4770.0034No
2GADD45Bna5242.0960.0028No
3FBLN1na6891.9140.0068No
4MYLKna8281.8020.0115No
5COL6A3na10591.6460.0103No
6TNFRSF12Ana11301.6110.0173No
7PVRna12041.5660.0238No
8MCM7na13221.5050.0276No
9FSTL3na13281.5030.0373No
10ACTA2na13361.4990.0469No
11ID2na13771.4790.0545No
12OXTRna18261.3180.0397No
13COL1A1na18731.3030.0459No
14ECM2na18861.2990.0539No
15PMEPA1na19641.2770.0583No
16COL4A2na19891.2690.0654No
17COL16A1na20591.2490.0701No
18VEGFCna22341.2010.0689No
19COL5A2na24341.1440.0660No
20GADD45Ana27981.0520.0539No
21COL7A1na28491.0410.0582No
22TAGLNna29451.0170.0599No
23APLP1na32140.9560.0522No
24ADAM12na33010.9430.0539No
25COL8A2na33530.9330.0574No
26ABI3BPna34160.9190.0602No
27TPM2na34840.9080.0627No
28CTGFna35080.9030.0675No
29LAMA2na36090.8830.0680No
30GPC1na36180.8820.0735No
31COL12A1na40590.8020.0557No
32LOXL1na45170.7320.0365No
33COL5A1na47460.6960.0292No
34CD44na52930.6070.0045No
35BDNFna53460.5970.0057No
36JUNna56420.555-0.0061No
37SNTB1na56620.552-0.0034No
38COL1A2na57820.534-0.0062No
39CAP2na58640.523-0.0069No
40FBN1na65350.433-0.0393No
41NOTCH2na72020.343-0.0719No
42PDGFRBna73030.329-0.0750No
43TGFBR3na73260.326-0.0740No
44CADM1na74180.314-0.0767No
45VCANna75330.301-0.0807No
46DKK1na76010.292-0.0823No
47PLOD3na76020.292-0.0804No
48TPM1na77180.276-0.0846No
49FSTL1na82070.222-0.1087No
50BASP1na82280.218-0.1083No
51MYL9na83220.207-0.1119No
52TNFRSF11Bna88240.144-0.1372No
53HTRA1na89150.133-0.1410No
54LRRC15na91210.111-0.1511No
55QSOX1na92710.093-0.1583No
56BMP1na93260.085-0.1606No
57MATN3na96200.058-0.1756No
58COL4A1na96460.056-0.1765No
59NID2na99490.024-0.1922No
60PTHLHna99840.024-0.1938No
61SNAI2na10596-0.050-0.2256No
62PCOLCE2na10786-0.077-0.2350No
63ITGB5na11075-0.118-0.2493No
64LOXL2na11483-0.161-0.2696No
65MESTna11757-0.197-0.2826No
66CALD1na11772-0.199-0.2821No
67RHOBna11865-0.214-0.2855No
68IL15na12671-0.309-0.3257No
69MAGEE1na12692-0.312-0.3247No
70FZD8na12693-0.312-0.3226No
71PDLIM4na12694-0.313-0.3205No
72ELNna12943-0.335-0.3313No
73CAPGna12979-0.337-0.3310No
74TNCna13218-0.374-0.3410No
75LRP1na13236-0.376-0.3394No
76VCAM1na13271-0.382-0.3386No
77SDC1na13322-0.390-0.3387No
78LAMA3na13513-0.415-0.3459No
79SPOCK1na13532-0.418-0.3441No
80FASna13787-0.456-0.3544No
81THBS2na13821-0.462-0.3531No
82PCOLCEna13967-0.483-0.3575No
83SLC6A8na14163-0.502-0.3644No
84PLAURna14166-0.503-0.3612No
85MMP3na14191-0.504-0.3591No
86TGFB1na14260-0.515-0.3593No
87FERMT2na14467-0.551-0.3665No
88LAMC1na14471-0.552-0.3630No
89COL6A2na14661-0.583-0.3691No
90INHBAna14670-0.585-0.3656No
91ENO2na14703-0.591-0.3634No
92RGS4na15008-0.634-0.3751No
93SERPINH1na15083-0.648-0.3747No
94WIPF1na15234-0.675-0.3782No
95GPX7na15382-0.700-0.3812No
96PLOD1na15757-0.775-0.3957No
97PFN2na15776-0.779-0.3915No
98VIMna16205-0.871-0.4082No
99EMP3na16303-0.898-0.4074No
100COPAna16547-0.956-0.4138Yes
101GJA1na16597-0.968-0.4100Yes
102CXCL1na16603-0.969-0.4038Yes
103TIMP1na16662-0.990-0.4003Yes
104TGFBIna16713-1.002-0.3963Yes
105TGM2na16812-1.030-0.3947Yes
106DPYSL3na16829-1.037-0.3887Yes
107TNFAIP3na16896-1.053-0.3852Yes
108CTHRC1na16991-1.088-0.3829Yes
109GLIPR1na17107-1.114-0.3816Yes
110ITGA5na17223-1.152-0.3800Yes
111MATN2na17264-1.166-0.3744Yes
112FUCA1na17274-1.170-0.3671Yes
113PPIBna17331-1.194-0.3622Yes
114LOXna17366-1.203-0.3560Yes
115NT5Ena17372-1.205-0.3483Yes
116ECM1na17433-1.227-0.3433Yes
117GEMna17445-1.234-0.3357Yes
118PLOD2na17461-1.240-0.3283Yes
119SLIT2na17519-1.266-0.3229Yes
120SERPINE2na17637-1.308-0.3204Yes
121IL32na17743-1.353-0.3170Yes
122SFRP1na17787-1.375-0.3102Yes
123LGALS1na17822-1.398-0.3027Yes
124PTX3na17871-1.426-0.2958Yes
125DAB2na17915-1.448-0.2885Yes
126MMP1na17947-1.463-0.2804Yes
127PMP22na18110-1.553-0.2786Yes
128WNT5Ana18187-1.597-0.2721Yes
129IL6na18227-1.619-0.2634Yes
130TPM4na18344-1.707-0.2582Yes
131CALUna18483-1.826-0.2534Yes
132SGCBna18513-1.847-0.2427Yes
133SPARCna18543-1.861-0.2319Yes
134IGFBP3na18665-2.008-0.2250Yes
135TIMP3na18706-2.053-0.2135Yes
136SDC4na18719-2.074-0.2004Yes
137ITGAVna18729-2.091-0.1871Yes
138PRSS2na18762-2.129-0.1747Yes
139LAMC2na18772-2.148-0.1609Yes
140NNMTna18828-2.244-0.1490Yes
141SCG2na18839-2.267-0.1345Yes
142AREGna18856-2.288-0.1202Yes
143CD59na18886-2.333-0.1063Yes
144CDH11na18932-2.418-0.0927Yes
145EDIL3na18945-2.445-0.0772Yes
146ITGA2na18964-2.492-0.0616Yes
147ITGB3na18981-2.535-0.0457Yes
148TFPI2na18994-2.568-0.0293Yes
149PRRX1na19101-2.909-0.0157Yes
150SAT1na19134-3.1310.0034Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION: Random ES distribution   
Gene set null distribution of ES for HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION