Datasetexpr.class.cls#HYD_versus_CONTROL.class.cls#HYD_versus_CONTROL_repos
Phenotypeclass.cls#HYD_versus_CONTROL_repos
Upregulated in classCONTROL
GeneSetHALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)-0.2137201
Normalized Enrichment Score (NES)-0.9971643
Nominal p-value0.46153846
FDR q-value0.4847154
FWER p-Value0.994
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1COL16A1na84.2520.0368No
2COL7A1na4282.4350.0361No
3COL1A1na4992.3470.0530No
4COL8A2na5802.2370.0684No
5COL5A1na9351.9210.0666No
6SNTB1na11341.7750.0718No
7TAGLNna11471.7710.0866No
8BASP1na12471.7130.0964No
9TPM2na12561.7090.1110No
10ECM2na12851.6960.1244No
11ID2na13831.6370.1336No
12COL4A2na15141.5700.1405No
13PVRna15511.5510.1522No
14ACTA2na15541.5490.1657No
15VEGFCna16361.5170.1747No
16GADD45Bna19721.3750.1692No
17JUNna19921.3660.1801No
18COL5A2na23171.2330.1739No
19GADD45Ana24241.2000.1788No
20EFEMP2na24271.2000.1892No
21MYLKna26901.1200.1853No
22SLC6A8na31161.0060.1718No
23ADAM12na33490.9530.1680No
24LOXL1na34900.9200.1687No
25GPC1na35000.9180.1762No
26LAMA2na35450.9080.1819No
27COL6A3na36180.8890.1859No
28TNFRSF12Ana36450.8830.1922No
29HTRA1na38470.8420.1891No
30COL4A1na38680.8400.1954No
31NID2na43080.7500.1789No
32PMEPA1na43200.7480.1849No
33APLP1na43850.7350.1879No
34PLOD3na44400.7260.1915No
35ITGB5na47500.6680.1811No
36OXTRna49180.6380.1779No
37MCM7na55330.5480.1505No
38FBLN1na55560.5440.1541No
39LAMA3na56870.5270.1519No
40BMP1na58410.5080.1483No
41FSTL3na60520.4800.1414No
42QSOX1na62280.4550.1362No
43LRP1na62910.4460.1369No
44PTX3na63580.4350.1372No
45BDNFna65750.4060.1294No
46CTGFna68940.3710.1160No
47TNFAIP3na69800.3640.1147No
48IL6na72440.3330.1038No
49TGFBR3na76150.2900.0869No
50ELNna76900.2840.0856No
51CXCL1na78140.2700.0815No
52COL12A1na78700.2650.0809No
53COL1A2na81000.2460.0710No
54MYL9na82500.2260.0652No
55COL6A2na83040.2190.0643No
56FZD8na83350.2150.0646No
57NOTCH2na83940.2080.0634No
58FBN1na86650.1840.0508No
59TNCna90350.1490.0328No
60SNAI2na91110.1390.0301No
61LOXL2na92240.1260.0253No
62RHOBna92500.1240.0250No
63LAMC1na92850.1200.0243No
64CALD1na96890.0770.0038No
65FUCA1na98350.060-0.0033No
66PDGFRBna99220.051-0.0073No
67TGFB1na99370.048-0.0076No
68TNFRSF11Bna101260.025-0.0173No
69RGS4na101510.021-0.0184No
70MATN3na10494-0.004-0.0363No
71TPM1na10625-0.019-0.0429No
72MATN2na10705-0.030-0.0468No
73MAGEE1na10811-0.039-0.0520No
74LRRC15na10849-0.046-0.0535No
75SDC1na11066-0.073-0.0642No
76ENO2na11078-0.075-0.0641No
77CD44na11081-0.075-0.0636No
78SERPINE2na11398-0.100-0.0793No
79PLAURna11509-0.112-0.0841No
80THBS2na11641-0.131-0.0898No
81SERPINH1na11747-0.145-0.0941No
82LAMC2na11847-0.157-0.0979No
83MMP3na11975-0.170-0.1031No
84ABI3BPna11996-0.172-0.1026No
85SLIT2na12028-0.177-0.1027No
86CAP2na12189-0.199-0.1094No
87PDLIM4na12197-0.199-0.1080No
88PPIBna12340-0.219-0.1135No
89MESTna12346-0.220-0.1119No
90PLOD1na12612-0.235-0.1237No
91DKK1na12791-0.256-0.1308No
92FASna12828-0.261-0.1304No
93IL32na12998-0.283-0.1368No
94ITGA5na13121-0.302-0.1406No
95FSTL1na13295-0.325-0.1468No
96VCANna13320-0.327-0.1452No
97TIMP3na13429-0.342-0.1479No
98SDC4na13470-0.349-0.1469No
99INHBAna13523-0.357-0.1465No
100SAT1na13558-0.362-0.1452No
101WIPF1na13585-0.367-0.1433No
102ECM1na13763-0.397-0.1491No
103FERMT2na13772-0.398-0.1461No
104TGM2na13799-0.403-0.1439No
105WNT5Ana13835-0.411-0.1421No
106GPX7na14117-0.430-0.1531No
107MMP1na14272-0.457-0.1572No
108COPAna14280-0.459-0.1536No
109PRSS2na14392-0.476-0.1552No
110CDH11na14430-0.480-0.1530No
111TIMP1na14560-0.499-0.1554No
112PCOLCEna14708-0.524-0.1585No
113IL15na15098-0.579-0.1738No
114PCOLCE2na15318-0.621-0.1799No
115SPOCK1na15503-0.651-0.1839No
116CAPGna15558-0.662-0.1809No
117EMP3na15769-0.696-0.1858No
118IGFBP3na16184-0.784-0.2007No
119ITGB3na16433-0.839-0.2064Yes
120TFPI2na16544-0.865-0.2046Yes
121CADM1na16551-0.866-0.1973Yes
122PFN2na16639-0.883-0.1941Yes
123DAB2na16686-0.894-0.1887Yes
124CTHRC1na16722-0.905-0.1826Yes
125TGFBIna16797-0.927-0.1784Yes
126PRRX1na16827-0.933-0.1717Yes
127PTHLHna16928-0.964-0.1686Yes
128ITGAVna16980-0.980-0.1627Yes
129VCAM1na16995-0.984-0.1548Yes
130NNMTna17005-0.985-0.1466Yes
131GLIPR1na17082-1.010-0.1418Yes
132TPM4na17203-1.053-0.1389Yes
133SPARCna17223-1.058-0.1306Yes
134ITGA2na17270-1.074-0.1236Yes
135PLOD2na17330-1.095-0.1171Yes
136LOXna17344-1.100-0.1082Yes
137GEMna17475-1.142-0.1050Yes
138SCG2na17637-1.216-0.1028Yes
139CALUna17764-1.268-0.0983Yes
140SFRP1na17943-1.343-0.0959Yes
141AREGna18122-1.456-0.0925Yes
142LGALS1na18128-1.458-0.0800Yes
143DPYSL3na18168-1.479-0.0691Yes
144VIMna18288-1.557-0.0617Yes
145NT5Ena18421-1.652-0.0542Yes
146PMP22na18769-1.973-0.0551Yes
147SGCBna18835-2.064-0.0405Yes
148EDIL3na18897-2.163-0.0247Yes
149GJA1na18902-2.173-0.0059Yes
150CD59na19031-2.4440.0088Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION: Random ES distribution   
Gene set null distribution of ES for HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION