# Electronic Supplementary Material (ESI) for Chemical Communications # This journal is © The Royal Society of Chemistry 2012 data_global _journal_name_full Chem.Commun. _journal_coden_cambridge 0182 #TrackingRef '- pdH2LCl2_miyake.cif' _publ_contact_author_name 'Prof. Hiroyuki Miyake' _publ_contact_author_address ; Department of Chemistry Graduate School of Science Osaka City University 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka 558-8585, Japan ; _publ_section_title ; Helicity Inversion from Left- to Right-Handed Square Planar Pd(II) Complexes: Synthesis of a Diastereomer Pair from a Single Chiral Ligand and their Structure Dynamism ; _publ_contact_author_email miyake@sci.osaka-cu.ac.jp loop_ _publ_author_name 'Hiroyuki Miyake' 'Masashi Ueda' 'Saori Murota' 'Hideki Sugimoto' 'Hiroshi Tsukube' data_[Pd(H2L)Cl2] _database_code_depnum_ccdc_archive 'CCDC 861130' #TrackingRef '- pdH2LCl2_miyake.cif' _audit_creation_method SHELXL-97 _chemical_name_systematic ; ? ; _chemical_formula_moiety 'C12 H26 Cl2 N4 O2 Pd' _chemical_formula_sum 'C12 H26 Cl2 N4 O2 Pd' _chemical_formula_weight 435.67 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' _symmetry_cell_setting Orthorhombic _symmetry_space_group_name_H-M 'P 212121' _symmetry_space_group_name_Hall 'P 2ac 2ab' loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' 'x+1/2, -y+1/2, -z' '-x, y+1/2, -z+1/2' _cell_length_a 10.2009(10) _cell_length_b 12.1922(15) _cell_length_c 13.7244(16) _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_volume 1706.9(3) _cell_formula_units_Z 4 _cell_measurement_temperature 100(2) _cell_measurement_reflns_used 8818 _cell_measurement_theta_min 4.1673 _cell_measurement_theta_max 27.4835 _exptl_crystal_description Prism _exptl_crystal_colour Orange _exptl_crystal_size_max 0.35 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.15 _exptl_crystal_density_meas ? _exptl_crystal_density_diffrn 1.695 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 888 _exptl_absorpt_coefficient_mu 1.409 _exptl_absorpt_correction_type Multi-scan _exptl_absorpt_correction_T_min 0.6383 _exptl_absorpt_correction_T_max 0.8164 _exptl_absorpt_process_details '(Jacobson, 1998)' _exptl_special_details ; ? ; _diffrn_ambient_temperature 100(2) _diffrn_radiation_wavelength 0.71070 _diffrn_radiation_type MoK\a _diffrn_radiation_source 'Rotating Anode' _diffrn_radiation_monochromator 'Graphite Monochromator' _diffrn_measurement_method \w _diffrn_radiation_detector CCD _diffrn_measurement_device ; Mercury CCD (2x2 bin mode) ; _diffrn_reflns_number 17076 _diffrn_reflns_av_R_equivalents 0.0340 _diffrn_reflns_av_sigmaI/netI 0.0266 _diffrn_reflns_limit_h_min -13 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_k_min -15 _diffrn_reflns_limit_k_max 15 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_theta_min 4.17 _diffrn_reflns_theta_max 27.48 _reflns_number_total 3883 _reflns_number_gt 3827 _reflns_threshold_expression >2sigma(I) _computing_data_collection 'CrystalClear (Rigaku Corp., 2000)' _computing_cell_refinement 'CrystalClear (Rigaku Corp., 2000)' _computing_data_reduction 'CrystalClear (Rigaku Corp., 2000)' _computing_structure_solution 'SIR97(Altomare, 1999)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _refine_special_details ; Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > 2sigma(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. ; _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0243P)^2^+0.6678P] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _atom_sites_solution_hydrogens geom _refine_ls_hydrogen_treatment constr _refine_ls_extinction_method none _refine_ls_extinction_coef ? _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack -0.003(19) _refine_ls_number_reflns 3883 _refine_ls_number_parameters 196 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.0204 _refine_ls_R_factor_gt 0.0195 _refine_ls_wR_factor_ref 0.0449 _refine_ls_wR_factor_gt 0.0447 _refine_ls_goodness_of_fit_ref 1.010 _refine_ls_restrained_S_all 1.010 _refine_ls_shift/su_max 0.002 _refine_ls_shift/su_mean 0.000 _chemical_absolute_configuration rmad loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group Pd1 Pd 0.923632(14) 0.087851(13) 0.604048(11) 0.00838(5) Uani 1 1 d . . . C1 C 0.4662(2) 0.2522(2) 0.73731(18) 0.0190(5) Uani 1 1 d . . . H1 H 0.4938 0.2129 0.7961 0.029 Uiso 1 1 calc R . . H2 H 0.3702 0.2523 0.7333 0.029 Uiso 1 1 calc R . . H3 H 0.4981 0.3280 0.7401 0.029 Uiso 1 1 calc R . . N1 N 0.51977(19) 0.19848(17) 0.65251(15) 0.0169(4) Uani 1 1 d . . . H4 H 0.4927 0.2198 0.5947 0.020 Uiso 1 1 calc R . . C2 C 0.6091(2) 0.11737(18) 0.65742(17) 0.0132(5) Uani 1 1 d . . . O1 O 0.66148(15) 0.08789(16) 0.73351(11) 0.0181(3) Uani 1 1 d . . . C3 C 0.6312(2) 0.06122(18) 0.55839(17) 0.0127(5) Uani 1 1 d . . . H5 H 0.6326 0.1199 0.5075 0.015 Uiso 1 1 calc R . . C4 C 0.5128(2) -0.0130(2) 0.53733(19) 0.0180(5) Uani 1 1 d . . . H6 H 0.5297 -0.0563 0.4785 0.027 Uiso 1 1 calc R . . H7 H 0.4346 0.0324 0.5274 0.027 Uiso 1 1 calc R . . H8 H 0.4985 -0.0624 0.5926 0.027 Uiso 1 1 calc R . . N2 N 0.76055(17) 0.00242(15) 0.55396(13) 0.0103(4) Uani 1 1 d . . . C5 C 0.7907(2) -0.02219(19) 0.44949(16) 0.0143(4) Uani 1 1 d . . . H9 H 0.7247 -0.0727 0.4235 0.021 Uiso 1 1 calc R . . H10 H 0.8776 -0.0560 0.4448 0.021 Uiso 1 1 calc R . . H11 H 0.7896 0.0461 0.4118 0.021 Uiso 1 1 calc R . . C6 C 0.75605(19) -0.10123(17) 0.61321(17) 0.0130(4) Uani 1 1 d . . . H12 H 0.6974 -0.1550 0.5812 0.016 Uiso 1 1 calc R . . H13 H 0.7202 -0.0851 0.6787 0.016 Uiso 1 1 calc R . . C7 C 0.8913(2) -0.14922(18) 0.62290(17) 0.0131(5) Uani 1 1 d . . . H14 H 0.8894 -0.2111 0.6696 0.016 Uiso 1 1 calc R . . H15 H 0.9205 -0.1779 0.5590 0.016 Uiso 1 1 calc R . . N3 N 0.98619(17) -0.06356(15) 0.65792(13) 0.0109(4) Uani 1 1 d . . . C8 C 0.9757(2) -0.0508(2) 0.76588(16) 0.0147(5) Uani 1 1 d . . . H16 H 0.8864 -0.0282 0.7830 0.022 Uiso 1 1 calc R . . H17 H 1.0381 0.0050 0.7880 0.022 Uiso 1 1 calc R . . H18 H 0.9957 -0.1210 0.7975 0.022 Uiso 1 1 calc R . . C9 C 1.1250(2) -0.0938(2) 0.62970(15) 0.0131(4) Uani 1 1 d . . . H19 H 1.1852 -0.0359 0.6553 0.016 Uiso 1 1 calc R . . C10 C 1.1696(2) -0.2044(2) 0.67038(19) 0.0192(5) Uani 1 1 d . . . H20 H 1.1646 -0.2029 0.7417 0.029 Uiso 1 1 calc R . . H21 H 1.2602 -0.2186 0.6502 0.029 Uiso 1 1 calc R . . H22 H 1.1125 -0.2626 0.6453 0.029 Uiso 1 1 calc R . . C11 C 1.1359(2) -0.0951(2) 0.51734(16) 0.0141(4) Uani 1 1 d . . . O2 O 1.11698(17) -0.17951(14) 0.47065(13) 0.0200(4) Uani 1 1 d . . . N4 N 1.16653(19) -0.00045(17) 0.47455(14) 0.0155(4) Uani 1 1 d . . . H23 H 1.1840 0.0575 0.5105 0.019 Uiso 1 1 calc R . . C12 C 1.1713(2) 0.0082(2) 0.36861(17) 0.0209(5) Uani 1 1 d . . . H24 H 1.2281 -0.0496 0.3424 0.031 Uiso 1 1 calc R . . H25 H 1.2063 0.0801 0.3502 0.031 Uiso 1 1 calc R . . H26 H 1.0827 -0.0003 0.3420 0.031 Uiso 1 1 calc R . . Cl1 Cl 1.11402(5) 0.17298(5) 0.65683(4) 0.01515(12) Uani 1 1 d . . . Cl2 Cl 0.84778(5) 0.25255(4) 0.54450(4) 0.01436(11) Uani 1 1 d . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Pd1 0.00917(7) 0.00739(7) 0.00858(7) -0.00043(7) 0.00015(6) -0.00016(6) C1 0.0186(11) 0.0210(13) 0.0175(12) -0.0044(11) 0.0030(8) 0.0044(9) N1 0.0183(10) 0.0215(11) 0.0109(10) -0.0007(8) 0.0007(7) 0.0071(8) C2 0.0106(10) 0.0133(11) 0.0158(11) 0.0015(9) 0.0017(8) -0.0016(7) O1 0.0211(8) 0.0207(8) 0.0125(8) -0.0017(8) -0.0041(6) 0.0038(8) C3 0.0104(10) 0.0133(12) 0.0145(11) 0.0009(9) -0.0029(8) 0.0003(8) C4 0.0118(11) 0.0205(13) 0.0217(12) -0.0029(11) -0.0035(9) -0.0016(9) N2 0.0110(9) 0.0103(9) 0.0095(9) -0.0006(7) -0.0002(7) -0.0005(7) C5 0.0155(11) 0.0177(12) 0.0097(11) -0.0018(9) 0.0010(8) 0.0011(8) C6 0.0143(10) 0.0097(10) 0.0149(11) 0.0008(10) 0.0010(8) -0.0021(8) C7 0.0160(11) 0.0084(10) 0.0150(12) 0.0002(9) -0.0019(8) -0.0017(8) N3 0.0133(8) 0.0096(10) 0.0098(9) -0.0002(7) -0.0007(7) 0.0019(7) C8 0.0211(11) 0.0154(11) 0.0077(11) 0.0014(9) -0.0002(8) 0.0020(9) C9 0.0130(9) 0.0120(10) 0.0143(11) -0.0022(10) -0.0019(7) 0.0027(9) C10 0.0201(12) 0.0180(12) 0.0193(13) 0.0003(10) -0.0030(9) 0.0070(9) C11 0.0108(9) 0.0158(11) 0.0156(11) -0.0011(10) -0.0010(8) 0.0034(9) O2 0.0300(10) 0.0140(8) 0.0161(9) -0.0040(7) 0.0017(7) 0.0007(7) N4 0.0170(10) 0.0153(10) 0.0142(10) -0.0022(8) 0.0032(8) -0.0019(8) C12 0.0253(13) 0.0213(13) 0.0160(13) -0.0006(10) 0.0059(9) -0.0054(10) Cl1 0.0124(3) 0.0130(3) 0.0200(3) -0.0046(2) -0.00075(18) -0.00242(19) Cl2 0.0166(3) 0.0102(2) 0.0163(3) 0.0035(2) 0.00146(19) 0.00141(19) _geom_special_details ; All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. ; loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag Pd1 N2 2.0797(18) . ? Pd1 N3 2.0885(18) . ? Pd1 Cl2 2.3019(6) . ? Pd1 Cl1 2.3182(5) . ? C1 N1 1.443(3) . ? C1 H1 0.9800 . ? C1 H2 0.9800 . ? C1 H3 0.9800 . ? N1 C2 1.346(3) . ? N1 H4 0.8800 . ? C2 O1 1.227(3) . ? C2 C3 1.538(3) . ? C3 N2 1.503(3) . ? C3 C4 1.537(3) . ? C3 H5 1.0000 . ? C4 H6 0.9800 . ? C4 H7 0.9800 . ? C4 H8 0.9800 . ? N2 C6 1.503(3) . ? N2 C5 1.497(3) . ? C5 H9 0.9800 . ? C5 H10 0.9800 . ? C5 H11 0.9800 . ? C6 C7 1.505(3) . ? C6 H12 0.9900 . ? C6 H13 0.9900 . ? C7 N3 1.503(3) . ? C7 H14 0.9900 . ? C7 H15 0.9900 . ? N3 C8 1.494(3) . ? N3 C9 1.514(3) . ? C8 H16 0.9800 . ? C8 H17 0.9800 . ? C8 H18 0.9800 . ? C9 C10 1.528(3) . ? C9 C11 1.546(3) . ? C9 H19 1.0000 . ? C10 H20 0.9800 . ? C10 H21 0.9800 . ? C10 H22 0.9800 . ? C11 O2 1.228(3) . ? C11 N4 1.332(3) . ? N4 C12 1.459(3) . ? N4 H23 0.8800 . ? C12 H24 0.9800 . ? C12 H25 0.9800 . ? C12 H26 0.9800 . ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag N2 Pd1 N3 85.34(7) . . ? N2 Pd1 Cl2 92.90(5) . . ? N3 Pd1 Cl2 178.12(5) . . ? N2 Pd1 Cl1 176.12(5) . . ? N3 Pd1 Cl1 91.67(5) . . ? Cl2 Pd1 Cl1 90.11(2) . . ? N1 C1 H1 109.5 . . ? N1 C1 H2 109.5 . . ? H1 C1 H2 109.5 . . ? N1 C1 H3 109.5 . . ? H1 C1 H3 109.5 . . ? H2 C1 H3 109.5 . . ? C2 N1 C1 123.3(2) . . ? C2 N1 H4 118.3 . . ? C1 N1 H4 118.3 . . ? O1 C2 N1 123.5(2) . . ? O1 C2 C3 123.88(19) . . ? N1 C2 C3 112.47(19) . . ? N2 C3 C4 113.69(18) . . ? N2 C3 C2 112.15(17) . . ? C4 C3 C2 108.21(18) . . ? N2 C3 H5 107.5 . . ? C4 C3 H5 107.5 . . ? C2 C3 H5 107.5 . . ? C3 C4 H6 109.5 . . ? C3 C4 H7 109.5 . . ? H6 C4 H7 109.5 . . ? C3 C4 H8 109.5 . . ? H6 C4 H8 109.5 . . ? H7 C4 H8 109.5 . . ? C3 N2 C6 110.63(16) . . ? C3 N2 C5 108.35(17) . . ? C6 N2 C5 110.85(17) . . ? C3 N2 Pd1 116.74(13) . . ? C6 N2 Pd1 105.46(13) . . ? C5 N2 Pd1 104.63(13) . . ? N2 C5 H9 109.5 . . ? N2 C5 H10 109.5 . . ? H9 C5 H10 109.5 . . ? N2 C5 H11 109.5 . . ? H9 C5 H11 109.5 . . ? H10 C5 H11 109.5 . . ? N2 C6 C7 110.29(17) . . ? N2 C6 H12 109.6 . . ? C7 C6 H12 109.6 . . ? N2 C6 H13 109.6 . . ? C7 C6 H13 109.6 . . ? H12 C6 H13 108.1 . . ? N3 C7 C6 110.41(17) . . ? N3 C7 H14 109.6 . . ? C6 C7 H14 109.6 . . ? N3 C7 H15 109.6 . . ? C6 C7 H15 109.6 . . ? H14 C7 H15 108.1 . . ? C8 N3 C7 110.07(17) . . ? C8 N3 C9 110.25(16) . . ? C7 N3 C9 110.57(17) . . ? C8 N3 Pd1 103.74(13) . . ? C7 N3 Pd1 107.71(13) . . ? C9 N3 Pd1 114.25(14) . . ? N3 C8 H16 109.5 . . ? N3 C8 H17 109.5 . . ? H16 C8 H17 109.5 . . ? N3 C8 H18 109.5 . . ? H16 C8 H18 109.5 . . ? H17 C8 H18 109.5 . . ? N3 C9 C10 113.58(19) . . ? N3 C9 C11 108.97(16) . . ? C10 C9 C11 109.5(2) . . ? N3 C9 H19 108.2 . . ? C10 C9 H19 108.2 . . ? C11 C9 H19 108.2 . . ? C9 C10 H20 109.5 . . ? C9 C10 H21 109.5 . . ? H20 C10 H21 109.5 . . ? C9 C10 H22 109.5 . . ? H20 C10 H22 109.5 . . ? H21 C10 H22 109.5 . . ? O2 C11 N4 122.2(2) . . ? O2 C11 C9 121.2(2) . . ? N4 C11 C9 116.6(2) . . ? C11 N4 C12 120.6(2) . . ? C11 N4 H23 119.7 . . ? C12 N4 H23 119.7 . . ? N4 C12 H24 109.5 . . ? N4 C12 H25 109.5 . . ? H24 C12 H25 109.5 . . ? N4 C12 H26 109.5 . . ? H24 C12 H26 109.5 . . ? H25 C12 H26 109.5 . . ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag C1 N1 C2 O1 -6.4(4) . . . . ? C1 N1 C2 C3 169.9(2) . . . . ? O1 C2 C3 N2 -24.8(3) . . . . ? N1 C2 C3 N2 158.89(18) . . . . ? O1 C2 C3 C4 101.4(2) . . . . ? N1 C2 C3 C4 -74.9(2) . . . . ? C4 C3 N2 C6 -49.3(2) . . . . ? C2 C3 N2 C6 73.8(2) . . . . ? C4 C3 N2 C5 72.4(2) . . . . ? C2 C3 N2 C5 -164.45(17) . . . . ? C4 C3 N2 Pd1 -169.90(15) . . . . ? C2 C3 N2 Pd1 -46.7(2) . . . . ? N3 Pd1 N2 C3 143.15(15) . . . . ? Cl2 Pd1 N2 C3 -36.20(15) . . . . ? N3 Pd1 N2 C6 19.87(13) . . . . ? Cl2 Pd1 N2 C6 -159.48(12) . . . . ? N3 Pd1 N2 C5 -97.13(14) . . . . ? Cl2 Pd1 N2 C5 83.53(13) . . . . ? C3 N2 C6 C7 -170.15(17) . . . . ? C5 N2 C6 C7 69.6(2) . . . . ? Pd1 N2 C6 C7 -43.07(19) . . . . ? N2 C6 C7 N3 51.1(2) . . . . ? C6 C7 N3 C8 81.0(2) . . . . ? C6 C7 N3 C9 -156.97(18) . . . . ? C6 C7 N3 Pd1 -31.5(2) . . . . ? N2 Pd1 N3 C8 -110.68(13) . . . . ? Cl1 Pd1 N3 C8 71.80(12) . . . . ? N2 Pd1 N3 C7 6.00(14) . . . . ? Cl1 Pd1 N3 C7 -171.53(13) . . . . ? N2 Pd1 N3 C9 129.26(14) . . . . ? Cl1 Pd1 N3 C9 -48.27(13) . . . . ? C8 N3 C9 C10 63.2(2) . . . . ? C7 N3 C9 C10 -58.8(2) . . . . ? Pd1 N3 C9 C10 179.54(15) . . . . ? C8 N3 C9 C11 -174.44(19) . . . . ? C7 N3 C9 C11 63.6(2) . . . . ? Pd1 N3 C9 C11 -58.1(2) . . . . ? N3 C9 C11 O2 -91.6(3) . . . . ? C10 C9 C11 O2 33.2(3) . . . . ? N3 C9 C11 N4 88.3(2) . . . . ? C10 C9 C11 N4 -146.9(2) . . . . ? O2 C11 N4 C12 3.6(3) . . . . ? C9 C11 N4 C12 -176.26(19) . . . . ? _diffrn_measured_fraction_theta_max 0.989 _diffrn_reflns_theta_full 27.48 _diffrn_measured_fraction_theta_full 0.989 _refine_diff_density_max 0.351 _refine_diff_density_min -0.397 _refine_diff_density_rms 0.060 data_[Pd(HL)Cl] _database_code_depnum_ccdc_archive 'CCDC 861131' #TrackingRef '- pdHLCl_miyake.cif' _audit_creation_method SHELXL-97 _chemical_name_systematic ; ? ; _chemical_formula_moiety 'C12 H25 Cl N4 O2 Pd' _chemical_formula_sum 'C12 H25 Cl N4 O2 Pd' _chemical_formula_weight 399.21 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' _symmetry_cell_setting Orthorhombic _symmetry_space_group_name_H-M 'P 21 21 21' _symmetry_space_group_name_Hall 'P 2ac 2ab' loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' 'x+1/2, -y+1/2, -z' '-x, y+1/2, -z+1/2' _cell_length_a 7.0991(10) _cell_length_b 14.147(2) _cell_length_c 15.733(2) _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_volume 1580.1(4) _cell_formula_units_Z 4 _cell_measurement_temperature 100(2) _cell_measurement_reflns_used 7624 _cell_measurement_theta_min 4.0673 _cell_measurement_theta_max 27.4835 _exptl_crystal_description Prism _exptl_crystal_colour Yellow _exptl_crystal_size_max 0.35 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.10 _exptl_crystal_density_meas ? _exptl_crystal_density_diffrn 1.678 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 816 _exptl_absorpt_coefficient_mu 1.351 _exptl_absorpt_correction_type Multi-scan _exptl_absorpt_correction_T_min 0.6493 _exptl_absorpt_correction_T_max 0.8768 _exptl_absorpt_process_details '(Jacobson, 1998)' _exptl_special_details ; ? ; _diffrn_ambient_temperature 100(2) _diffrn_radiation_wavelength 0.71070 _diffrn_radiation_type MoK\a _diffrn_radiation_source 'Rotating Anode' _diffrn_radiation_monochromator 'Graphite Monochromator' _diffrn_measurement_method \w _diffrn_radiation_detector CCD _diffrn_measurement_device ; Mercury CCD (2x2 bin mode) ; _diffrn_reflns_number 15637 _diffrn_reflns_av_R_equivalents 0.0303 _diffrn_reflns_av_sigmaI/netI 0.0236 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_k_min -17 _diffrn_reflns_limit_k_max 18 _diffrn_reflns_limit_l_min -20 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_theta_min 4.07 _diffrn_reflns_theta_max 27.48 _reflns_number_total 3592 _reflns_number_gt 3519 _reflns_threshold_expression >2sigma(I) _computing_data_collection 'CrystalClear (Rigaku Corp., 2000)' _computing_cell_refinement 'CrystalClear (Rigaku Corp., 2000)' _computing_data_reduction 'CrystalClear (Rigaku Corp., 2000)' _computing_structure_solution 'SIR97(Altomare, 1999)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _refine_special_details ; Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > 2sigma(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. ; _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0191P)^2^+1.5997P] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _atom_sites_solution_hydrogens geom _refine_ls_hydrogen_treatment constr _refine_ls_extinction_method none _refine_ls_extinction_coef ? _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack -0.03(3) _refine_ls_number_reflns 3592 _refine_ls_number_parameters 187 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.0280 _refine_ls_R_factor_gt 0.0265 _refine_ls_wR_factor_ref 0.0545 _refine_ls_wR_factor_gt 0.0541 _refine_ls_goodness_of_fit_ref 1.131 _refine_ls_restrained_S_all 1.131 _refine_ls_shift/su_max 0.002 _refine_ls_shift/su_mean 0.000 _chemical_absolute_configuration rmad loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group Pd1 Pd 0.31784(2) 0.995641(13) 0.752776(12) 0.00979(6) Uani 1 1 d . . . C1 C 0.0629(4) 1.1311(2) 0.85584(18) 0.0163(6) Uani 1 1 d . . . H1 H -0.0715 1.1288 0.8700 0.024 Uiso 1 1 calc R . . H2 H 0.0810 1.1690 0.8043 0.024 Uiso 1 1 calc R . . H3 H 0.1326 1.1598 0.9030 0.024 Uiso 1 1 calc R . . N1 N 0.1323(3) 1.03528(16) 0.84125(15) 0.0129(5) Uani 1 1 d . . . C2 C 0.0488(4) 0.9637(2) 0.88032(16) 0.0134(5) Uani 1 1 d . . . O1 O -0.0878(3) 0.96803(15) 0.93075(12) 0.0185(5) Uani 1 1 d . . . C3 C 0.1225(4) 0.8659(2) 0.85566(17) 0.0128(6) Uani 1 1 d . . . H4 H 0.0474 0.8446 0.8054 0.015 Uiso 1 1 calc R . . C4 C 0.0962(5) 0.7919(2) 0.92459(18) 0.0185(6) Uani 1 1 d . . . H5 H 0.1577 0.7330 0.9073 0.028 Uiso 1 1 calc R . . H6 H -0.0386 0.7805 0.9333 0.028 Uiso 1 1 calc R . . H7 H 0.1526 0.8146 0.9777 0.028 Uiso 1 1 calc R . . N2 N 0.3225(3) 0.87750(16) 0.82605(14) 0.0119(4) Uani 1 1 d . . . C5 C 0.4561(5) 0.8862(2) 0.89938(18) 0.0183(6) Uani 1 1 d . . . H8 H 0.4712 0.8243 0.9266 0.027 Uiso 1 1 calc R . . H9 H 0.4058 0.9315 0.9407 0.027 Uiso 1 1 calc R . . H10 H 0.5786 0.9083 0.8788 0.027 Uiso 1 1 calc R . . C6 C 0.3831(4) 0.80068(19) 0.76654(18) 0.0165(6) Uani 1 1 d . . . H11 H 0.2781 0.7841 0.7279 0.020 Uiso 1 1 calc R . . H12 H 0.4178 0.7435 0.7993 0.020 Uiso 1 1 calc R . . C7 C 0.5500(4) 0.8344(2) 0.71559(18) 0.0155(6) Uani 1 1 d . . . H13 H 0.5870 0.7851 0.6741 0.019 Uiso 1 1 calc R . . H14 H 0.6581 0.8459 0.7540 0.019 Uiso 1 1 calc R . . N3 N 0.5008(3) 0.92432(16) 0.66918(14) 0.0109(5) Uani 1 1 d . . . C8 C 0.3877(4) 0.9011(2) 0.59206(17) 0.0175(6) Uani 1 1 d . . . H15 H 0.3546 0.9596 0.5622 0.026 Uiso 1 1 calc R . . H16 H 0.2723 0.8681 0.6090 0.026 Uiso 1 1 calc R . . H17 H 0.4617 0.8605 0.5543 0.026 Uiso 1 1 calc R . . C9 C 0.6742(4) 0.97914(19) 0.64307(16) 0.0127(5) Uani 1 1 d . . . H18 H 0.6355 1.0265 0.5992 0.015 Uiso 1 1 calc R . . C10 C 0.7583(4) 1.0324(2) 0.71742(18) 0.0168(6) Uani 1 1 d . . . H19 H 0.6666 1.0784 0.7388 0.025 Uiso 1 1 calc R . . H20 H 0.8723 1.0656 0.6988 0.025 Uiso 1 1 calc R . . H21 H 0.7905 0.9878 0.7628 0.025 Uiso 1 1 calc R . . C11 C 0.8241(4) 0.9140(2) 0.60289(17) 0.0146(5) Uani 1 1 d . . . O2 O 0.9335(3) 0.86749(16) 0.64739(13) 0.0182(4) Uani 1 1 d . . . N4 N 0.8271(4) 0.91422(18) 0.51778(14) 0.0162(5) Uani 1 1 d . . . H22 H 0.7457 0.9497 0.4902 0.019 Uiso 1 1 calc R . . C12 C 0.9600(5) 0.8580(2) 0.46965(19) 0.0223(7) Uani 1 1 d . . . H23 H 1.0640 0.8983 0.4504 0.033 Uiso 1 1 calc R . . H24 H 0.8964 0.8304 0.4202 0.033 Uiso 1 1 calc R . . H25 H 1.0096 0.8073 0.5057 0.033 Uiso 1 1 calc R . . Cl1 Cl 0.28770(10) 1.12666(5) 0.66518(4) 0.01659(14) Uani 1 1 d . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Pd1 0.00835(9) 0.01027(9) 0.01074(8) 0.00028(9) -0.00003(8) 0.00064(7) C1 0.0169(15) 0.0140(14) 0.0180(14) -0.0020(11) 0.0001(12) 0.0031(12) N1 0.0117(11) 0.0137(11) 0.0132(10) -0.0026(8) -0.0003(9) 0.0018(9) C2 0.0119(13) 0.0173(14) 0.0109(12) -0.0011(10) -0.0028(11) 0.0011(11) O1 0.0166(10) 0.0231(11) 0.0157(9) -0.0010(8) 0.0056(8) 0.0012(9) C3 0.0104(13) 0.0161(14) 0.0120(12) 0.0000(10) 0.0007(10) -0.0003(11) C4 0.0189(15) 0.0199(16) 0.0168(13) 0.0044(11) 0.0030(12) -0.0004(13) N2 0.0105(11) 0.0106(11) 0.0147(10) 0.0022(8) -0.0006(10) -0.0004(10) C5 0.0160(15) 0.0219(16) 0.0172(13) 0.0037(11) -0.0062(13) -0.0023(13) C6 0.0176(14) 0.0095(12) 0.0225(15) -0.0006(10) 0.0045(12) 0.0021(10) C7 0.0131(14) 0.0121(13) 0.0212(13) 0.0012(10) 0.0028(12) 0.0028(12) N3 0.0089(11) 0.0123(11) 0.0115(10) -0.0012(9) 0.0000(9) -0.0003(9) C8 0.0129(14) 0.0245(17) 0.0151(13) -0.0075(11) 0.0002(12) -0.0026(12) C9 0.0084(11) 0.0153(13) 0.0143(11) 0.0019(9) -0.0007(10) 0.0005(11) C10 0.0129(13) 0.0190(15) 0.0184(12) 0.0001(10) -0.0009(11) -0.0006(11) C11 0.0118(13) 0.0151(14) 0.0168(12) 0.0031(10) 0.0015(12) -0.0028(12) O2 0.0114(10) 0.0238(11) 0.0194(10) 0.0042(8) -0.0008(9) 0.0048(9) N4 0.0133(12) 0.0229(13) 0.0123(10) -0.0001(9) -0.0004(10) 0.0048(11) C12 0.0217(16) 0.0250(17) 0.0202(14) -0.0012(12) 0.0042(13) 0.0060(14) Cl1 0.0169(3) 0.0152(3) 0.0176(3) 0.0047(2) 0.0000(3) 0.0017(3) _geom_special_details ; All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. ; loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag Pd1 N1 1.997(2) . ? Pd1 N2 2.031(2) . ? Pd1 N3 2.106(2) . ? Pd1 Cl1 2.3196(7) . ? C1 N1 1.460(4) . ? C1 H1 0.9800 . ? C1 H2 0.9800 . ? C1 H3 0.9800 . ? N1 C2 1.324(4) . ? C2 O1 1.255(3) . ? C2 C3 1.529(4) . ? C3 N2 1.503(4) . ? C3 C4 1.519(4) . ? C3 H4 1.0000 . ? C4 H5 0.9800 . ? C4 H6 0.9800 . ? C4 H7 0.9800 . ? N2 C6 1.498(3) . ? N2 C5 1.498(4) . ? C5 H8 0.9800 . ? C5 H9 0.9800 . ? C5 H10 0.9800 . ? C6 C7 1.508(4) . ? C6 H11 0.9900 . ? C6 H12 0.9900 . ? C7 N3 1.508(3) . ? C7 H13 0.9900 . ? C7 H14 0.9900 . ? N3 C8 1.491(3) . ? N3 C9 1.512(3) . ? C8 H15 0.9800 . ? C8 H16 0.9800 . ? C8 H17 0.9800 . ? C9 C10 1.515(4) . ? C9 C11 1.544(4) . ? C9 H18 1.0000 . ? C10 H19 0.9800 . ? C10 H20 0.9800 . ? C10 H21 0.9800 . ? C11 O2 1.235(3) . ? C11 N4 1.339(3) . ? N4 C12 1.448(4) . ? N4 H22 0.8800 . ? C12 H23 0.9800 . ? C12 H24 0.9800 . ? C12 H25 0.9800 . ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag N1 Pd1 N2 81.15(9) . . ? N1 Pd1 N3 167.63(9) . . ? N2 Pd1 N3 87.14(9) . . ? N1 Pd1 Cl1 97.41(7) . . ? N2 Pd1 Cl1 175.20(7) . . ? N3 Pd1 Cl1 93.94(7) . . ? N1 C1 H1 109.5 . . ? N1 C1 H2 109.5 . . ? H1 C1 H2 109.5 . . ? N1 C1 H3 109.5 . . ? H1 C1 H3 109.5 . . ? H2 C1 H3 109.5 . . ? C2 N1 C1 119.1(2) . . ? C2 N1 Pd1 113.82(18) . . ? C1 N1 Pd1 126.35(19) . . ? O1 C2 N1 127.0(3) . . ? O1 C2 C3 118.0(2) . . ? N1 C2 C3 114.9(2) . . ? N2 C3 C4 114.3(2) . . ? N2 C3 C2 107.7(2) . . ? C4 C3 C2 113.6(2) . . ? N2 C3 H4 106.9 . . ? C4 C3 H4 106.9 . . ? C2 C3 H4 106.9 . . ? C3 C4 H5 109.5 . . ? C3 C4 H6 109.5 . . ? H5 C4 H6 109.5 . . ? C3 C4 H7 109.5 . . ? H5 C4 H7 109.5 . . ? H6 C4 H7 109.5 . . ? C6 N2 C5 111.0(2) . . ? C6 N2 C3 112.7(2) . . ? C5 N2 C3 111.6(2) . . ? C6 N2 Pd1 104.31(15) . . ? C5 N2 Pd1 112.35(18) . . ? C3 N2 Pd1 104.47(16) . . ? N2 C5 H8 109.5 . . ? N2 C5 H9 109.5 . . ? H8 C5 H9 109.5 . . ? N2 C5 H10 109.5 . . ? H8 C5 H10 109.5 . . ? H9 C5 H10 109.5 . . ? N2 C6 C7 109.2(2) . . ? N2 C6 H11 109.8 . . ? C7 C6 H11 109.8 . . ? N2 C6 H12 109.8 . . ? C7 C6 H12 109.8 . . ? H11 C6 H12 108.3 . . ? C6 C7 N3 110.0(2) . . ? C6 C7 H13 109.7 . . ? N3 C7 H13 109.7 . . ? C6 C7 H14 109.7 . . ? N3 C7 H14 109.7 . . ? H13 C7 H14 108.2 . . ? C8 N3 C7 109.5(2) . . ? C8 N3 C9 109.3(2) . . ? C7 N3 C9 112.1(2) . . ? C8 N3 Pd1 106.35(17) . . ? C7 N3 Pd1 104.17(16) . . ? C9 N3 Pd1 115.21(16) . . ? N3 C8 H15 109.5 . . ? N3 C8 H16 109.5 . . ? H15 C8 H16 109.5 . . ? N3 C8 H17 109.5 . . ? H15 C8 H17 109.5 . . ? H16 C8 H17 109.5 . . ? N3 C9 C10 111.5(2) . . ? N3 C9 C11 111.5(2) . . ? C10 C9 C11 110.0(2) . . ? N3 C9 H18 107.9 . . ? C10 C9 H18 107.9 . . ? C11 C9 H18 107.9 . . ? C9 C10 H19 109.5 . . ? C9 C10 H20 109.5 . . ? H19 C10 H20 109.5 . . ? C9 C10 H21 109.5 . . ? H19 C10 H21 109.5 . . ? H20 C10 H21 109.5 . . ? O2 C11 N4 123.9(3) . . ? O2 C11 C9 121.3(2) . . ? N4 C11 C9 114.8(2) . . ? C11 N4 C12 122.1(3) . . ? C11 N4 H22 118.9 . . ? C12 N4 H22 118.9 . . ? N4 C12 H23 109.5 . . ? N4 C12 H24 109.5 . . ? H23 C12 H24 109.5 . . ? N4 C12 H25 109.5 . . ? H23 C12 H25 109.5 . . ? H24 C12 H25 109.5 . . ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag N2 Pd1 N1 C2 -24.38(19) . . . . ? N3 Pd1 N1 C2 -5.3(5) . . . . ? Cl1 Pd1 N1 C2 151.00(18) . . . . ? N2 Pd1 N1 C1 165.8(2) . . . . ? N3 Pd1 N1 C1 -175.2(4) . . . . ? Cl1 Pd1 N1 C1 -18.9(2) . . . . ? C1 N1 C2 O1 -0.3(4) . . . . ? Pd1 N1 C2 O1 -171.0(2) . . . . ? C1 N1 C2 C3 175.6(2) . . . . ? Pd1 N1 C2 C3 5.0(3) . . . . ? O1 C2 C3 N2 -157.7(2) . . . . ? N1 C2 C3 N2 26.0(3) . . . . ? O1 C2 C3 C4 -30.0(4) . . . . ? N1 C2 C3 C4 153.6(2) . . . . ? C4 C3 N2 C6 77.8(3) . . . . ? C2 C3 N2 C6 -155.0(2) . . . . ? C4 C3 N2 C5 -47.9(3) . . . . ? C2 C3 N2 C5 79.3(3) . . . . ? C4 C3 N2 Pd1 -169.58(19) . . . . ? C2 C3 N2 Pd1 -42.3(2) . . . . ? N1 Pd1 N2 C6 154.89(18) . . . . ? N3 Pd1 N2 C6 -21.09(17) . . . . ? N1 Pd1 N2 C5 -84.74(19) . . . . ? N3 Pd1 N2 C5 99.27(19) . . . . ? N1 Pd1 N2 C3 36.39(16) . . . . ? N3 Pd1 N2 C3 -139.59(16) . . . . ? C5 N2 C6 C7 -74.8(3) . . . . ? C3 N2 C6 C7 159.2(2) . . . . ? Pd1 N2 C6 C7 46.5(2) . . . . ? N2 C6 C7 N3 -56.6(3) . . . . ? C6 C7 N3 C8 -78.7(3) . . . . ? C6 C7 N3 C9 159.9(2) . . . . ? C6 C7 N3 Pd1 34.7(2) . . . . ? N1 Pd1 N3 C8 89.6(5) . . . . ? N2 Pd1 N3 C8 108.49(19) . . . . ? Cl1 Pd1 N3 C8 -66.83(18) . . . . ? N1 Pd1 N3 C7 -26.0(5) . . . . ? N2 Pd1 N3 C7 -7.11(17) . . . . ? Cl1 Pd1 N3 C7 177.57(16) . . . . ? N1 Pd1 N3 C9 -149.1(4) . . . . ? N2 Pd1 N3 C9 -130.30(18) . . . . ? Cl1 Pd1 N3 C9 54.39(17) . . . . ? C8 N3 C9 C10 160.7(2) . . . . ? C7 N3 C9 C10 -77.7(3) . . . . ? Pd1 N3 C9 C10 41.1(3) . . . . ? C8 N3 C9 C11 -75.9(3) . . . . ? C7 N3 C9 C11 45.6(3) . . . . ? Pd1 N3 C9 C11 164.50(16) . . . . ? N3 C9 C11 O2 -82.4(3) . . . . ? C10 C9 C11 O2 41.8(3) . . . . ? N3 C9 C11 N4 99.0(3) . . . . ? C10 C9 C11 N4 -136.7(3) . . . . ? O2 C11 N4 C12 0.8(5) . . . . ? C9 C11 N4 C12 179.3(3) . . . . ? _diffrn_measured_fraction_theta_max 0.990 _diffrn_reflns_theta_full 27.48 _diffrn_measured_fraction_theta_full 0.990 _refine_diff_density_max 0.560 _refine_diff_density_min -0.482 _refine_diff_density_rms 0.070