# Supplementary Material (ESI) for CrystEngComm # This journal is (c) The Royal Society of Chemistry 2010 data_global _journal_name_full CrystEngComm _journal_coden_Cambridge 1350 _publ_contact_author_name 'Frontera, Antonio' _publ_contact_author_email toni.frontera@uib.es _publ_section_title ; Experimental and theoretical study of uracil derivatives: the crucial role of weak \"I\^a\"I, lone pair\^a\"I and fluorine\^afluorine noncovalent interactions ; _publ_requested_category FO loop_ _publ_author_name A.Frontera M.Barcelo-Oliver C.Estarellas A.Garcia-Raso ; A.Terron ; D.QuiA+-onero I.Mata E.Molins 'P.M.Deya Serra' # Attachment '- compound 3.cif' data_mb010210 _database_code_depnum_ccdc_archive 'CCDC 771500' #TrackingRef '- compound 3.cif' _audit_creation_method SHELXL-97 _chemical_name_systematic ; 5-fluoro-1-(3-hydroxypropyl)pyrimidine-2,4(1H,3H)-dione ; _chemical_name_common 5-fluoro-1-(3-hydroxypropyl)pyrimidine-2,4(1H,3H)-dione _chemical_melting_point ? _chemical_formula_moiety 'C7 H9 F N2 O3' _chemical_formula_sum 'C7 H9 F N2 O3' _chemical_formula_weight 188.16 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' _symmetry_cell_setting triclinic _symmetry_space_group_name_H-M P-1 _symmetry_space_group_name_Hall '-P 1' loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' _cell_length_a 5.0210(5) _cell_length_b 13.1280(11) _cell_length_c 13.2385(12) _cell_angle_alpha 105.164(7) _cell_angle_beta 98.715(8) _cell_angle_gamma 100.835(8) _cell_volume 808.48(14) _cell_formula_units_Z 4 _cell_measurement_temperature 183(2) _cell_measurement_reflns_used 3118 _cell_measurement_theta_min 2.6440 _cell_measurement_theta_max 32.6073 _exptl_crystal_description plate _exptl_crystal_colour colorless _exptl_crystal_size_max 0.25 _exptl_crystal_size_mid 0.23 _exptl_crystal_size_min 0.08 _exptl_crystal_density_meas ? _exptl_crystal_density_diffrn 1.546 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 392 _exptl_absorpt_coefficient_mu 0.136 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_correction_T_min 0.89177 _exptl_absorpt_correction_T_max 1.00000 _exptl_absorpt_process_details ; CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.33.55 (release 05-01-2010 CrysAlis171 .NET) (compiled Jan 5 2010,16:28:46) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. ; _diffrn_ambient_temperature 183(2) _diffrn_radiation_wavelength 0.7107 _diffrn_radiation_type MoK\a _diffrn_radiation_source 'Enhance (Mo) X-ray Source' _diffrn_radiation_monochromator graphite _diffrn_measurement_device_type 'Xcalibur Ruby' _diffrn_measurement_method '/o oscillation scan' _diffrn_detector_area_resol_mean 10.4498 _diffrn_standards_number ? _diffrn_standards_interval_count ? _diffrn_standards_interval_time ? _diffrn_standards_decay_% ? _diffrn_reflns_number 7496 _diffrn_reflns_av_R_equivalents 0.0497 _diffrn_reflns_av_sigmaI/netI 0.0751 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_k_min -15 _diffrn_reflns_limit_k_max 15 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_theta_min 2.65 _diffrn_reflns_theta_max 25.34 _reflns_number_total 2880 _reflns_number_gt 1871 _reflns_threshold_expression >2sigma(I) _computing_data_collection 'CrysAlis RED (Oxford, 2007)' _computing_cell_refinement 'CrysAlis RED (Oxford, 2007)' _computing_data_reduction 'CrysAlis RED (Oxford, 2007)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_molecular_graphics 'ORTEP-3 (Farrugia, 1997)' _computing_publication_material 'SHELXL-97 (Sheldrick, 1997)' _refine_special_details ; Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > 2sigma(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. ; _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0696P)^2^+0.9620P] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _atom_sites_solution_hydrogens geom _refine_ls_hydrogen_treatment constr _refine_ls_extinction_method none _refine_ls_extinction_coef ? _refine_ls_number_reflns 2880 _refine_ls_number_parameters 237 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.1160 _refine_ls_R_factor_gt 0.0637 _refine_ls_wR_factor_ref 0.1846 _refine_ls_wR_factor_gt 0.1697 _refine_ls_goodness_of_fit_ref 1.135 _refine_ls_restrained_S_all 1.135 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group N1 N 0.6089(7) 0.1218(3) 0.1616(2) 0.0253(8) Uani 1 1 d . . . C2 C 0.7612(8) 0.0732(3) 0.0948(3) 0.0236(9) Uani 1 1 d . . . O2 O 0.7981(6) 0.0973(2) 0.0137(2) 0.0302(7) Uani 1 1 d . . . N3 N 0.8730(7) -0.0054(3) 0.1245(2) 0.0269(8) Uani 1 1 d . . . H3 H 0.9736 -0.0350 0.0841 0.032 Uiso 1 1 calc R . . C4 C 0.8420(9) -0.0423(3) 0.2119(3) 0.0290(10) Uani 1 1 d . . . O4 O 0.9537(7) -0.1127(3) 0.2300(2) 0.0449(9) Uani 1 1 d . . . C5 C 0.6699(9) 0.0115(3) 0.2739(3) 0.0282(10) Uani 1 1 d . . . F5 F 0.6224(5) -0.0204(2) 0.36013(18) 0.0421(7) Uani 1 1 d . . . C6 C 0.5640(8) 0.0901(3) 0.2506(3) 0.0283(10) Uani 1 1 d . . . H6 H 0.4586 0.1241 0.2946 0.034 Uiso 1 1 calc R . . C7 C 0.4918(8) 0.2117(3) 0.1409(3) 0.0283(10) Uani 1 1 d . . . H7A H 0.3125 0.2067 0.1606 0.034 Uiso 1 1 calc R . . H7B H 0.4635 0.2043 0.0649 0.034 Uiso 1 1 calc R . . C8 C 0.6789(8) 0.3217(3) 0.2027(3) 0.0314(10) Uani 1 1 d . . . H8A H 0.8352 0.3354 0.1691 0.038 Uiso 1 1 calc R . . H8B H 0.7508 0.3217 0.2750 0.038 Uiso 1 1 calc R . . C9 C 0.5250(9) 0.4132(4) 0.2075(3) 0.0342(11) Uani 1 1 d . . . H9A H 0.3669 0.4000 0.2403 0.041 Uiso 1 1 calc R . . H9B H 0.6478 0.4825 0.2501 0.041 Uiso 1 1 calc R . . O10 O 0.4341(7) 0.4152(3) 0.1005(2) 0.0424(8) Uani 1 1 d . . . H10 H 0.3901 0.4726 0.1021 0.064 Uiso 1 1 calc R . . N11 N 0.1403(7) 0.7123(3) 0.3958(2) 0.0256(8) Uani 1 1 d . . . C12 C 0.0885(8) 0.6255(3) 0.4356(3) 0.0270(10) Uani 1 1 d . . . O12 O 0.1708(6) 0.5431(2) 0.4045(2) 0.0352(7) Uani 1 1 d . . . N13 N -0.0638(7) 0.6373(3) 0.5145(2) 0.0287(8) Uani 1 1 d . . . H13 H -0.0962 0.5838 0.5407 0.034 Uiso 1 1 calc R . . C14 C -0.1701(9) 0.7248(4) 0.5563(3) 0.0313(10) Uani 1 1 d . . . O14 O -0.3009(7) 0.7272(3) 0.6272(2) 0.0448(9) Uani 1 1 d . . . C15 C -0.1073(9) 0.8100(3) 0.5077(3) 0.0273(9) Uani 1 1 d . . . F15 F -0.2070(6) 0.8981(2) 0.5433(2) 0.0439(7) Uani 1 1 d . . . C16 C 0.0395(9) 0.8021(3) 0.4318(3) 0.0288(10) Uani 1 1 d . . . H16 H 0.0747 0.8590 0.4023 0.035 Uiso 1 1 calc R . . C17 C 0.2779(8) 0.7021(3) 0.3036(3) 0.0281(10) Uani 1 1 d . . . H17A H 0.4080 0.6566 0.3082 0.034 Uiso 1 1 calc R . . H17B H 0.3817 0.7734 0.3063 0.034 Uiso 1 1 calc R . . C18 C 0.0687(9) 0.6531(4) 0.1978(3) 0.0332(10) Uani 1 1 d . . . H18A H 0.0044 0.5757 0.1861 0.040 Uiso 1 1 calc R . . H18B H -0.0901 0.6850 0.2020 0.040 Uiso 1 1 calc R . . C19 C 0.1865(9) 0.6709(4) 0.1036(3) 0.0364(11) Uani 1 1 d . . . H19A H 0.0408 0.6445 0.0394 0.044 Uiso 1 1 calc R . . H19B H 0.2605 0.7480 0.1162 0.044 Uiso 1 1 calc R . . O20 O 0.3977(7) 0.6155(3) 0.0895(2) 0.0439(9) Uani 1 1 d . . . H20 H 0.4265 0.6086 0.0290 0.066 Uiso 1 1 calc R . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 N1 0.0324(19) 0.024(2) 0.0251(17) 0.0101(15) 0.0102(14) 0.0125(15) C2 0.027(2) 0.023(2) 0.024(2) 0.0069(18) 0.0060(17) 0.0119(18) O2 0.0423(17) 0.0332(18) 0.0270(15) 0.0162(14) 0.0157(13) 0.0208(14) N3 0.037(2) 0.024(2) 0.0278(18) 0.0097(15) 0.0163(15) 0.0187(15) C4 0.044(3) 0.020(2) 0.028(2) 0.0100(19) 0.0109(19) 0.011(2) O4 0.073(2) 0.040(2) 0.0430(19) 0.0253(17) 0.0252(16) 0.0360(18) C5 0.042(2) 0.021(2) 0.027(2) 0.0118(19) 0.0146(18) 0.0095(19) F5 0.0652(18) 0.0411(16) 0.0357(14) 0.0233(13) 0.0259(12) 0.0209(13) C6 0.035(2) 0.026(2) 0.026(2) 0.0055(19) 0.0129(18) 0.0100(19) C7 0.033(2) 0.025(2) 0.029(2) 0.0077(19) 0.0052(18) 0.0138(18) C8 0.033(2) 0.030(3) 0.035(2) 0.016(2) 0.0058(18) 0.0088(19) C9 0.042(3) 0.034(3) 0.030(2) 0.020(2) 0.0070(19) 0.003(2) O10 0.070(2) 0.045(2) 0.0290(16) 0.0197(15) 0.0201(15) 0.0338(18) N11 0.038(2) 0.022(2) 0.0219(17) 0.0106(15) 0.0105(14) 0.0101(15) C12 0.036(2) 0.028(3) 0.021(2) 0.0117(19) 0.0076(17) 0.010(2) O12 0.058(2) 0.0269(18) 0.0369(17) 0.0175(14) 0.0283(15) 0.0236(15) N13 0.050(2) 0.0205(19) 0.0269(18) 0.0145(15) 0.0189(16) 0.0159(16) C14 0.040(3) 0.034(3) 0.026(2) 0.013(2) 0.0099(19) 0.014(2) O14 0.074(2) 0.042(2) 0.0417(18) 0.0238(16) 0.0399(17) 0.0321(17) C15 0.043(3) 0.018(2) 0.025(2) 0.0063(18) 0.0113(18) 0.0160(19) F15 0.0742(19) 0.0317(16) 0.0456(15) 0.0197(13) 0.0314(13) 0.0336(14) C16 0.044(3) 0.022(2) 0.025(2) 0.0124(19) 0.0075(19) 0.0114(19) C17 0.034(2) 0.029(2) 0.029(2) 0.0145(19) 0.0156(18) 0.0098(19) C18 0.034(2) 0.039(3) 0.031(2) 0.013(2) 0.0105(19) 0.012(2) C19 0.048(3) 0.041(3) 0.031(2) 0.017(2) 0.015(2) 0.024(2) O20 0.061(2) 0.051(2) 0.0410(19) 0.0258(17) 0.0272(16) 0.0351(17) _geom_special_details ; All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. ; loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag N1 C2 1.367(5) . ? N1 C6 1.384(5) . ? N1 C7 1.482(5) . ? C2 O2 1.226(4) . ? C2 N3 1.377(5) . ? N3 C4 1.385(5) . ? N3 H3 0.8600 . ? C4 O4 1.223(5) . ? C4 C5 1.435(6) . ? C5 C6 1.328(6) . ? C5 F5 1.353(4) . ? C6 H6 0.9300 . ? C7 C8 1.509(6) . ? C7 H7A 0.9700 . ? C7 H7B 0.9700 . ? C8 C9 1.539(6) . ? C8 H8A 0.9700 . ? C8 H8B 0.9700 . ? C9 O10 1.429(5) . ? C9 H9A 0.9700 . ? C9 H9B 0.9700 . ? O10 H10 0.8200 . ? N11 C16 1.370(5) . ? N11 C12 1.374(5) . ? N11 C17 1.481(5) . ? C12 O12 1.223(5) . ? C12 N13 1.379(5) . ? N13 C14 1.378(5) . ? N13 H13 0.8600 . ? C14 O14 1.222(5) . ? C14 C15 1.438(6) . ? C15 C16 1.328(6) . ? C15 F15 1.347(5) . ? C16 H16 0.9300 . ? C17 C18 1.518(6) . ? C17 H17A 0.9700 . ? C17 H17B 0.9700 . ? C18 C19 1.511(5) . ? C18 H18A 0.9700 . ? C18 H18B 0.9700 . ? C19 O20 1.402(5) . ? C19 H19A 0.9700 . ? C19 H19B 0.9700 . ? O20 H20 0.8200 . ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag C2 N1 C6 121.3(3) . . ? C2 N1 C7 120.3(3) . . ? C6 N1 C7 118.4(3) . . ? O2 C2 N1 122.8(3) . . ? O2 C2 N3 121.6(4) . . ? N1 C2 N3 115.6(3) . . ? C2 N3 C4 127.5(3) . . ? C2 N3 H3 116.2 . . ? C4 N3 H3 116.2 . . ? O4 C4 N3 121.2(4) . . ? O4 C4 C5 126.7(4) . . ? N3 C4 C5 112.0(3) . . ? C6 C5 F5 120.6(4) . . ? C6 C5 C4 122.8(4) . . ? F5 C5 C4 116.6(3) . . ? C5 C6 N1 120.7(4) . . ? C5 C6 H6 119.6 . . ? N1 C6 H6 119.6 . . ? N1 C7 C8 112.1(3) . . ? N1 C7 H7A 109.2 . . ? C8 C7 H7A 109.2 . . ? N1 C7 H7B 109.2 . . ? C8 C7 H7B 109.2 . . ? H7A C7 H7B 107.9 . . ? C7 C8 C9 111.8(3) . . ? C7 C8 H8A 109.3 . . ? C9 C8 H8A 109.3 . . ? C7 C8 H8B 109.3 . . ? C9 C8 H8B 109.3 . . ? H8A C8 H8B 107.9 . . ? O10 C9 C8 108.1(4) . . ? O10 C9 H9A 110.1 . . ? C8 C9 H9A 110.1 . . ? O10 C9 H9B 110.1 . . ? C8 C9 H9B 110.1 . . ? H9A C9 H9B 108.4 . . ? C9 O10 H10 109.5 . . ? C16 N11 C12 121.2(3) . . ? C16 N11 C17 119.7(3) . . ? C12 N11 C17 118.7(3) . . ? O12 C12 N11 123.2(4) . . ? O12 C12 N13 121.5(3) . . ? N11 C12 N13 115.3(4) . . ? C14 N13 C12 127.5(3) . . ? C14 N13 H13 116.3 . . ? C12 N13 H13 116.3 . . ? O14 C14 N13 122.1(4) . . ? O14 C14 C15 125.4(4) . . ? N13 C14 C15 112.5(4) . . ? C16 C15 F15 121.8(4) . . ? C16 C15 C14 122.0(4) . . ? F15 C15 C14 116.2(3) . . ? C15 C16 N11 121.6(4) . . ? C15 C16 H16 119.2 . . ? N11 C16 H16 119.2 . . ? N11 C17 C18 111.5(3) . . ? N11 C17 H17A 109.3 . . ? C18 C17 H17A 109.3 . . ? N11 C17 H17B 109.3 . . ? C18 C17 H17B 109.3 . . ? H17A C17 H17B 108.0 . . ? C19 C18 C17 112.9(4) . . ? C19 C18 H18A 109.0 . . ? C17 C18 H18A 109.0 . . ? C19 C18 H18B 109.0 . . ? C17 C18 H18B 109.0 . . ? H18A C18 H18B 107.8 . . ? O20 C19 C18 109.7(3) . . ? O20 C19 H19A 109.7 . . ? C18 C19 H19A 109.7 . . ? O20 C19 H19B 109.7 . . ? C18 C19 H19B 109.7 . . ? H19A C19 H19B 108.2 . . ? C19 O20 H20 109.5 . . ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag C6 N1 C2 O2 177.9(4) . . . . ? C7 N1 C2 O2 -3.2(6) . . . . ? C6 N1 C2 N3 -2.3(5) . . . . ? C7 N1 C2 N3 176.6(3) . . . . ? O2 C2 N3 C4 -178.2(4) . . . . ? N1 C2 N3 C4 1.9(6) . . . . ? C2 N3 C4 O4 -179.7(4) . . . . ? C2 N3 C4 C5 0.3(6) . . . . ? O4 C4 C5 C6 177.6(4) . . . . ? N3 C4 C5 C6 -2.4(6) . . . . ? O4 C4 C5 F5 -1.3(6) . . . . ? N3 C4 C5 F5 178.8(3) . . . . ? F5 C5 C6 N1 -179.1(3) . . . . ? C4 C5 C6 N1 2.1(6) . . . . ? C2 N1 C6 C5 0.4(6) . . . . ? C7 N1 C6 C5 -178.5(4) . . . . ? C2 N1 C7 C8 -94.5(4) . . . . ? C6 N1 C7 C8 84.4(4) . . . . ? N1 C7 C8 C9 -163.5(3) . . . . ? C7 C8 C9 O10 -62.0(4) . . . . ? C16 N11 C12 O12 178.8(4) . . . . ? C17 N11 C12 O12 6.3(6) . . . . ? C16 N11 C12 N13 -1.5(5) . . . . ? C17 N11 C12 N13 -174.0(3) . . . . ? O12 C12 N13 C14 -179.6(4) . . . . ? N11 C12 N13 C14 0.7(6) . . . . ? C12 N13 C14 O14 -179.3(4) . . . . ? C12 N13 C14 C15 0.3(6) . . . . ? O14 C14 C15 C16 179.1(4) . . . . ? N13 C14 C15 C16 -0.5(6) . . . . ? O14 C14 C15 F15 -1.2(6) . . . . ? N13 C14 C15 F15 179.2(3) . . . . ? F15 C15 C16 N11 -179.9(3) . . . . ? C14 C15 C16 N11 -0.3(6) . . . . ? C12 N11 C16 C15 1.3(6) . . . . ? C17 N11 C16 C15 173.8(4) . . . . ? C16 N11 C17 C18 -85.3(4) . . . . ? C12 N11 C17 C18 87.3(4) . . . . ? N11 C17 C18 C19 163.3(4) . . . . ? C17 C18 C19 O20 64.9(5) . . . . ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A N3 H3 O2 0.86 1.98 2.836(4) 176.8 2_755 O10 H10 O20 0.82 1.92 2.710(4) 161.2 . N13 H13 O12 0.86 1.98 2.841(4) 177.8 2_566 O20 H20 O10 0.82 1.92 2.729(4) 167.7 2_665 _diffrn_measured_fraction_theta_max 0.981 _diffrn_reflns_theta_full 25.34 _diffrn_measured_fraction_theta_full 0.981 _refine_diff_density_max 0.328 _refine_diff_density_min -0.239 _refine_diff_density_rms 0.066 # Attachment '- compound 5.cif' #\#CIF_1.1 # CIF produced by WinGX routine CIF_UPDATE # Created on 2009-03-12 at 14:56:19 # Using CIFtbx version 2.6.2 16 Jun 1998 # Dictionary name : cif_core.dic # Dictionary vers : 2.3 # Request file : c:\wingx\files\archive.dat # CIF files read : pm135 struct difabs dreduc data_pm135 _database_code_depnum_ccdc_archive 'CCDC 771501' #TrackingRef '- compound 5.cif' _audit_creation_date 2009-03-12T14:56:19-00:00 _audit_creation_method 'WinGX routine CIF_UPDATE' _audit_conform_dict_name cif_core.dic _audit_conform_dict_version 2.3 _audit_conform_dict_location ftp://ftp.iucr.org/pub/cif_core.dic #----------------------------------------------------------------------------# # CHEMICAL INFORMATION # #----------------------------------------------------------------------------# _chemical_name_systematic ; ? ; _chemical_formula_moiety 'C9 H11 F1 N2 O4, H2 O' _chemical_formula_sum 'C9 H13 F N2 O5' _chemical_formula_weight 248.21 _chemical_compound_source 'synthesis as described' #----------------------------------------------------------------------------# # UNIT CELL INFORMATION # #----------------------------------------------------------------------------# _symmetry_cell_setting monoclinic _symmetry_space_group_name_H-M 'P 21/c' _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_Int_Tables_number 14 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' _cell_length_a 8.440(5) _cell_length_b 5.117(2) _cell_length_c 26.516(11) _cell_angle_alpha 90 _cell_angle_beta 95.37(4) _cell_angle_gamma 90 _cell_volume 1140.1(9) _cell_formula_units_Z 4 _cell_measurement_temperature 294(2) _cell_measurement_reflns_used 25 _cell_measurement_theta_min 1.54 _cell_measurement_theta_max 11.97 _cell_measurement_wavelength 0.71073 #----------------------------------------------------------------------------# # CRYSTAL INFORMATION # #----------------------------------------------------------------------------# _exptl_crystal_description prism _exptl_crystal_colour colourless _exptl_crystal_size_max 0.33 _exptl_crystal_size_mid 0.24 _exptl_crystal_size_min 0.21 _exptl_crystal_density_diffrn 1.446 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 520 _exptl_special_details ; ? ; #----------------------------------------------------------------------------# # ABSORPTION CORRECTION # #----------------------------------------------------------------------------# _exptl_absorpt_coefficient_mu 0.128 _exptl_absorpt_correction_type refdelf _exptl_absorpt_process_details ; Walker, N. & Stuart, D (1983) Acta. Cryst. A39, 158-166 ; _exptl_absorpt_correction_T_min 0.964 _exptl_absorpt_correction_T_max 0.973 #----------------------------------------------------------------------------# # DATA COLLECTION # #----------------------------------------------------------------------------# _diffrn_source 'Enraf Nonius FR590' _diffrn_ambient_temperature 294(2) _diffrn_radiation_wavelength 0.71073 _diffrn_radiation_type MoK\a _diffrn_radiation_monochromator graphite _diffrn_radiation_probe x-ray _diffrn_detector 'scintillation LiI' _diffrn_detector_dtime 1.195 _diffrn_orient_matrix_type ; x-axis points to radiation source the matrix is specified in reciprocal space ; _diffrn_orient_matrix_ub_11 -0.040815 _diffrn_orient_matrix_ub_12 0.152889 _diffrn_orient_matrix_ub_13 0.018436 _diffrn_orient_matrix_ub_21 0.073456 _diffrn_orient_matrix_ub_22 0.118184 _diffrn_orient_matrix_ub_23 -0.01675 _diffrn_orient_matrix_ub_31 -0.084258 _diffrn_orient_matrix_ub_32 0.029204 _diffrn_orient_matrix_ub_33 -0.028537 _diffrn_measurement_device '\k-geometry diffractometer' _diffrn_measurement_device_type 'Enraf Nonius CAD4' _diffrn_measurement_method 'non-profiled omega scans' _diffrn_standards_number 2 _diffrn_standards_interval_time 60 _diffrn_standards_decay_% -1 loop_ _diffrn_standard_refln_index_h _diffrn_standard_refln_index_k _diffrn_standard_refln_index_l 2 1 -2 1 1 -3 _diffrn_reflns_av_R_equivalents 0.0605 _diffrn_reflns_av_unetI/netI 0.0988 _diffrn_reflns_number 2040 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_k_max 6 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_limit_l_max 31 _diffrn_reflns_theta_min 1.54 _diffrn_reflns_theta_max 24.97 _diffrn_reflns_theta_full 24.97 _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.998 _reflns_number_total 1990 _reflns_number_gt 930 _reflns_threshold_expression >2sigma(I) #----------------------------------------------------------------------------# # COMPUTER PROGRAMS USED # #----------------------------------------------------------------------------# _computing_data_collection 'CAD4 Express (Enraf Nonius, 1994)' _computing_cell_refinement 'CAD4 Express (Enraf Nonius, 1994)' _computing_data_reduction 'XCAD4 (Harms & Wocadlo, 1995)' _computing_structure_solution 'SHELXS-86 (Sheldrick, 1986)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_molecular_graphics 'Ortep-3 for Windows (Farrugia, 1997)' _computing_publication_material 'WinGX publication routines (Farrugia, 1999)' #----------------------------------------------------------------------------# # REFINEMENT INFORMATION # #----------------------------------------------------------------------------# _refine_special_details ; Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > 2sigma(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. ; _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.2000P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _atom_sites_solution_hydrogens geom _refine_ls_hydrogen_treatment mixed _refine_ls_extinction_method none _refine_ls_number_reflns 1990 _refine_ls_number_parameters 166 _refine_ls_number_restraints 5 _refine_ls_R_factor_all 0.1651 _refine_ls_R_factor_gt 0.0675 _refine_ls_wR_factor_ref 0.2683 _refine_ls_wR_factor_gt 0.2066 _refine_ls_goodness_of_fit_ref 0.791 _refine_ls_restrained_S_all 0.791 _refine_ls_shift/su_max 0 _refine_ls_shift/su_mean 0 _refine_diff_density_max 0.264 _refine_diff_density_min -0.24 _refine_diff_density_rms 0.061 #----------------------------------------------------------------------------# # ATOMIC TYPES, COORDINATES AND THERMAL PARAMETERS # #----------------------------------------------------------------------------# loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0 0 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.006 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group C2 C 0.0882(7) -0.2803(11) 0.4455(2) 0.0495(14) Uani 1 1 d . . . C4 C 0.2546(6) -0.0338(11) 0.51075(19) 0.0499(14) Uani 1 1 d . . . C5 C 0.3022(6) 0.1133(11) 0.4695(2) 0.0528(15) Uani 1 1 d . . . C6 C 0.2557(6) 0.0674(11) 0.4212(2) 0.0539(15) Uani 1 1 d . . . H6 H 0.2953 0.1667 0.3958 0.065 Uiso 1 1 calc R . . C7 C 0.0892(6) -0.1742(11) 0.35550(19) 0.0511(14) Uani 1 1 d . . . H7A H 0.0699 -0.3593 0.3499 0.061 Uiso 1 1 calc R . . H7B H 0.1708 -0.1204 0.3342 0.061 Uiso 1 1 calc R . . C8 C -0.0634(6) -0.0231(11) 0.34012(18) 0.0487(14) Uani 1 1 d . . . H8A H -0.141 -0.0584 0.364 0.058 Uiso 1 1 calc R . . H8B H -0.0412 0.163 0.3408 0.058 Uiso 1 1 calc R . . C9 C -0.1312(6) -0.1033(11) 0.28688(19) 0.0523(15) Uani 1 1 d . . . H9A H -0.1589 -0.2873 0.2871 0.063 Uiso 1 1 calc R . . H9B H -0.0497 -0.0806 0.2638 0.063 Uiso 1 1 calc R . . C10 C -0.2766(6) 0.0523(11) 0.2676(2) 0.0512(14) Uani 1 1 d . . . H10A H -0.3559 0.0367 0.2916 0.061 Uiso 1 1 calc R . . H10B H -0.2475 0.2352 0.2659 0.061 Uiso 1 1 calc R . . C11 C -0.3479(7) -0.0321(11) 0.2172(2) 0.0522(14) Uani 1 1 d . . . F5 F 0.4068(5) 0.3093(7) 0.48235(14) 0.0819(13) Uani 1 1 d . . . N1 N 0.1471(5) -0.1311(8) 0.40918(16) 0.0467(11) Uani 1 1 d . . . N3 N 0.1452(5) -0.2284(9) 0.49460(17) 0.0511(12) Uani 1 1 d D . . H3 H 0.098(6) -0.319(9) 0.5163(17) 0.061 Uiso 1 1 d D . . O2 O -0.0089(5) -0.4571(8) 0.43542(14) 0.0648(12) Uani 1 1 d . . . O4 O 0.2975(5) -0.0081(9) 0.55575(15) 0.0686(13) Uani 1 1 d . . . O12 O -0.2981(5) -0.2004(9) 0.19169(16) 0.0738(14) Uani 1 1 d . . . O13 O -0.4762(5) 0.1053(10) 0.20109(17) 0.0750(14) Uani 1 1 d D . . H13 H -0.516(9) 0.071(16) 0.1720(14) 0.113 Uiso 1 1 d D . . OW O -0.6046(8) 0.0162(11) 0.10901(19) 0.107(2) Uani 1 1 d D . . HW1 H -0.626(12) -0.142(9) 0.091(3) 0.16 Uiso 1 1 d D . . HW2 H -0.637(12) 0.162(11) 0.089(3) 0.16 Uiso 1 1 d D . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C2 0.050(3) 0.048(3) 0.051(3) 0.009(3) 0.004(3) -0.005(3) C4 0.047(3) 0.058(4) 0.046(3) -0.005(3) 0.008(2) -0.001(3) C5 0.050(3) 0.046(3) 0.063(4) -0.001(3) 0.005(3) -0.012(3) C6 0.049(3) 0.049(3) 0.064(4) 0.007(3) 0.010(3) -0.011(3) C7 0.054(3) 0.050(3) 0.051(3) -0.006(3) 0.012(3) -0.002(3) C8 0.054(3) 0.050(3) 0.044(3) -0.002(2) 0.012(2) -0.003(3) C9 0.055(3) 0.055(3) 0.047(3) -0.004(3) 0.009(3) 0.001(3) C10 0.046(3) 0.053(3) 0.054(3) -0.004(3) 0.003(2) -0.001(3) C11 0.058(4) 0.045(3) 0.055(3) -0.001(3) 0.009(3) -0.010(3) F5 0.089(3) 0.078(3) 0.079(3) -0.010(2) 0.009(2) -0.036(2) N1 0.046(3) 0.048(3) 0.046(2) 0.004(2) 0.005(2) -0.005(2) N3 0.049(3) 0.061(3) 0.045(3) 0.010(2) 0.010(2) -0.003(2) O2 0.073(3) 0.060(3) 0.060(2) 0.010(2) -0.001(2) -0.030(2) O4 0.074(3) 0.082(3) 0.050(2) -0.008(2) 0.007(2) -0.019(2) O12 0.073(3) 0.089(3) 0.058(2) -0.020(2) -0.003(2) 0.016(3) O13 0.070(3) 0.078(3) 0.073(3) -0.015(2) -0.013(2) 0.020(3) OW 0.140(5) 0.098(4) 0.074(3) -0.013(3) -0.036(3) 0.033(4) #----------------------------------------------------------------------------# # MOLECULAR GEOMETRY # #----------------------------------------------------------------------------# _geom_special_details ; All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. ; loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag C2 O2 1.233(6) . ? C2 N1 1.358(7) . ? C2 N3 1.372(7) . ? C4 O4 1.221(6) . ? C4 N3 1.398(7) . ? C4 C5 1.417(8) . ? C5 C6 1.324(7) . ? C5 F5 1.358(6) . ? C6 N1 1.386(6) . ? C6 H6 0.93 . ? C7 N1 1.478(6) . ? C7 C8 1.525(7) . ? C7 H7A 0.97 . ? C7 H7B 0.97 . ? C8 C9 1.529(7) . ? C8 H8A 0.97 . ? C8 H8B 0.97 . ? C9 C10 1.511(7) . ? C9 H9A 0.97 . ? C9 H9B 0.97 . ? C10 C11 1.477(7) . ? C10 H10A 0.97 . ? C10 H10B 0.97 . ? C11 O12 1.196(6) . ? C11 O13 1.328(7) . ? N3 H3 0.87(5) . ? O13 H13 0.83(2) . ? OW HW1 0.95(5) . ? OW HW2 0.94(6) . ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag O2 C2 N1 122.6(5) . . ? O2 C2 N3 120.9(5) . . ? N1 C2 N3 116.4(5) . . ? O4 C4 N3 120.2(5) . . ? O4 C4 C5 128.2(5) . . ? N3 C4 C5 111.6(5) . . ? C6 C5 F5 120.0(5) . . ? C6 C5 C4 124.9(5) . . ? F5 C5 C4 115.0(5) . . ? C5 C6 N1 118.9(5) . . ? C5 C6 H6 120.6 . . ? N1 C6 H6 120.6 . . ? N1 C7 C8 112.1(4) . . ? N1 C7 H7A 109.2 . . ? C8 C7 H7A 109.2 . . ? N1 C7 H7B 109.2 . . ? C8 C7 H7B 109.2 . . ? H7A C7 H7B 107.9 . . ? C9 C8 C7 110.2(4) . . ? C9 C8 H8A 109.6 . . ? C7 C8 H8A 109.6 . . ? C9 C8 H8B 109.6 . . ? C7 C8 H8B 109.6 . . ? H8A C8 H8B 108.1 . . ? C8 C9 C10 113.2(4) . . ? C8 C9 H9A 108.9 . . ? C10 C9 H9A 108.9 . . ? C8 C9 H9B 108.9 . . ? C10 C9 H9B 108.9 . . ? H9A C9 H9B 107.8 . . ? C11 C10 C9 113.7(5) . . ? C11 C10 H10A 108.8 . . ? C9 C10 H10A 108.8 . . ? C11 C10 H10B 108.8 . . ? C9 C10 H10B 108.8 . . ? H10A C10 H10B 107.7 . . ? O12 C11 O13 121.2(5) . . ? O12 C11 C10 126.0(6) . . ? O13 C11 C10 112.8(5) . . ? C2 N1 C6 121.8(5) . . ? C2 N1 C7 119.2(4) . . ? C6 N1 C7 118.9(4) . . ? C4 N3 C2 126.3(5) . . ? C4 N3 H3 121(4) . . ? C2 N3 H3 113(4) . . ? C11 O13 H13 116(6) . . ? HW1 OW HW2 111(4) . . ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A N3 H3 O2 0.87(5) 1.92(5) 2.785(6) 175(5) 3_546 O13 H13 OW 0.83(2) 1.79(5) 2.617(6) 177(9) . OW HW1 O4 0.95(5) 2.09(6) 3.036(7) 173(9) 4_455 OW HW2 O4 0.94(6) 2.03(7) 2.966(7) 171(8) 4_465