Content of the files:

./systemname/travis/
	voro_nb_matrix_1.svg --> voronoi tesselation neighbourhood matrix
	g.csv --> radial distribution function Li-X, distance in pm, relative to ideal gas
	n.csv --> number integral, distance in pm
	mol_*.png --> nomenclature for voronoi matrix

./systemname/prealpha-input/
	general.inp --> prealpha software package general input file.
	molecular.inp --> prealpha software package molecular input file.
	cluster.inp --> cluster analysis input file (global cutoff, Li-Li clustering)
	cluster_scan.inp -->  cluster analysis input file (scan, for cluster count distribution function)
	pairs.inp -->  cluster analysis input file (pair mode, for Li-Li and Li-S pairs)
	exponent_2_diffusion_long.inp --> 1D mean squared displacement input file
	exponent_4_diffusion_long.inp --> 1D mean quartic displacement input file
	
./systemname/prealpha-input/
	output.out --> output obtained when running prealpha with the above input files
	MSD_projection_*_self_diffusion --> 1D mean squared displacements <R**2>
	MQD_projection_*_self_diffusion --> 1D mean quartic displacements <R**4>
	scan_cluster_statistics.dat --> Li-Li cluster statistics as a function of cutoff distance
	global_cluster_autocorrelation.dat --> intermittent autocorrelation function for Li-Li cluster lifetime
	global_cluster_statistics.dat --> Li-Li cluster statistics
	pairs_cluster_autocorrelation.dat --> intermittent autocorrelation function for Li-Li/Li-S cluster lifetime
	pairs_cluster_statistics.dat --> Li-Li/Li-S cluster statistics
	projection_2_alpha2 --> 3D alpha2 non-gaussian parameter and 3D <R**2> for Li
	projection_1_alpha2 --> 3D alpha2 non-gaussian parameter and 3D <R**2> for the anion
	reference_2_all_around_2_rdf_xcharge_numberintegral --> number integral of charge weighted RDF ("sum rules") around Li
	reference_2_all_around_2_rdf_xcharge_energyintegral --> coulomb energy running integral around Li
	reference_2_all_around_2_rdf_xcharge --> charge weighted RDF around Li
	reference_1_all_around_2_rdf_xcharge_numberintegral --> number integral of charge weighted RDF ("sum rules") around the anion
	reference_1_all_around_2_rdf_xcharge_energyintegral --> coulomb energy running integral around the anion
	reference_1_all_around_2_rdf_xcharge --> charge weighted RDF around the anion
	*xyz --> molecular structures used in the analysis