# Supplementary Material (ESI) for Dalton Transactions # This journal is (c) The Royal Society of Chemistry 2009 data_global _journal_name_full 'Dalton Trans.' _journal_coden_Cambridge 0222 _publ_contact_author_name 'Debashis Ray' _publ_contact_author_email DRAY@CHEM.IITKGP.ERNET.IN _publ_section_title ; Binding and Cleavage of DNA by a Heteronuclear [Na2Cu4] Coordination Cluster with Trapped Water Heptamer from the Assembly of Two Hydroxo-Bridged [CuII2] Units by Dimeric Sodium Nitrate Template ; loop_ _publ_author_name 'Debashis Ray' 'Farukh Arjmand' 'Guillem Aromi' 'Mala Chauhan' 'Debashree Mandal' # Attachment 'drdm32.cif' data_1 _database_code_depnum_ccdc_archive 'CCDC 654549' _audit_creation_method SHELXL-97 _chemical_name_systematic ; ? ; _chemical_name_common ? _chemical_melting_point ? _chemical_formula_moiety ? _chemical_formula_sum 'C26 H30 Cu4 N6 Na2 O23' _chemical_formula_weight 1094.70 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cu Cu 0.3201 1.2651 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Na Na 0.0362 0.0249 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' _symmetry_cell_setting Monoclinic _symmetry_space_group_name_H-M C2/c loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z+1/2' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y, z-1/2' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z-1/2' _cell_length_a 28.09(3) _cell_length_b 9.13(2) _cell_length_c 18.26(3) _cell_angle_alpha 90.00 _cell_angle_beta 115.98(5) _cell_angle_gamma 90.00 _cell_volume 4210(12) _cell_formula_units_Z 4 _cell_measurement_temperature 293(2) _cell_measurement_reflns_used 25 _cell_measurement_theta_min 1.61 _cell_measurement_theta_max 24.97 _exptl_crystal_description block _exptl_crystal_colour green _exptl_crystal_size_max 0.36 _exptl_crystal_size_mid 0.34 _exptl_crystal_size_min 0.23 _exptl_crystal_density_meas ? _exptl_crystal_density_diffrn 1.727 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 2200 _exptl_absorpt_coefficient_mu 2.103 _exptl_absorpt_correction_type none _exptl_absorpt_correction_T_min 0.5181 _exptl_absorpt_correction_T_max 0.6434 _exptl_absorpt_process_details ? _exptl_special_details ; ? ; _diffrn_ambient_temperature 293(2) _diffrn_radiation_wavelength 0.71073 _diffrn_radiation_type MoK\a _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_monochromator graphite _diffrn_measurement_device_type CAD4 _diffrn_measurement_method /W-scan _diffrn_detector_area_resol_mean ? _diffrn_standards_number 25 _diffrn_standards_interval_count ? _diffrn_standards_interval_time 60 _diffrn_standards_decay_% ? _diffrn_reflns_number 3783 _diffrn_reflns_av_R_equivalents 0.0867 _diffrn_reflns_av_sigmaI/netI 0.0623 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_h_max 33 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_l_min -21 _diffrn_reflns_limit_l_max 19 _diffrn_reflns_theta_min 1.61 _diffrn_reflns_theta_max 24.97 _reflns_number_total 3710 _reflns_number_gt 2617 _reflns_threshold_expression >2sigma(I) _computing_data_collection ? _computing_cell_refinement ? _computing_data_reduction ? _computing_structure_solution ? _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_molecular_graphics ? _computing_publication_material ? _refine_special_details ; Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > 2sigma(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. ; _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1060P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _atom_sites_solution_hydrogens geom _refine_ls_hydrogen_treatment constr _refine_ls_extinction_method none _refine_ls_extinction_coef ? _refine_ls_number_reflns 3710 _refine_ls_number_parameters 276 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.1029 _refine_ls_R_factor_gt 0.0593 _refine_ls_wR_factor_ref 0.1727 _refine_ls_wR_factor_gt 0.1524 _refine_ls_goodness_of_fit_ref 1.069 _refine_ls_restrained_S_all 1.069 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group Na1 Na 0.05889(10) -0.0794(3) 0.05216(16) 0.0402(7) Uani 1 1 d . . . O6 O 0.1521(2) -0.0741(8) 0.1490(3) 0.0616(17) Uani 1 1 d . . . O7 O 0.2176(2) -0.1835(7) 0.1400(3) 0.0605(16) Uani 1 1 d . . . N3 N 0.1700(2) -0.1541(7) 0.1115(4) 0.0425(15) Uani 1 1 d . . . O5 O 0.1385(2) -0.2009(6) 0.0423(3) 0.0553(14) Uani 1 1 d . . . O9 O 0.01992(19) 0.1459(5) 0.0685(3) 0.0404(11) Uani 1 1 d . . . O10 O 0.0220(2) -0.2817(6) -0.1640(3) 0.0471(13) Uani 1 1 d . . . O11 O 0.0000 0.0844(8) -0.2500 0.0414(16) Uani 1 2 d S . . O8 O 0.0189(2) -0.2062(6) 0.1241(3) 0.0503(13) Uani 1 1 d . . . O12 O 0.0208(2) 0.4812(6) -0.0614(4) 0.0577(15) Uani 1 1 d . . . Cu1 Cu 0.13988(3) 0.22855(9) 0.05543(5) 0.0316(3) Uani 1 1 d . . . Cu2 Cu 0.13690(3) 0.00650(9) -0.06333(4) 0.0296(2) Uani 1 1 d . . . O3 O 0.18882(16) 0.1141(5) 0.0295(3) 0.0334(10) Uani 1 1 d . . . O4 O 0.09012(16) 0.0996(5) -0.0257(3) 0.0319(10) Uani 1 1 d . . . O1 O 0.08832(17) -0.0753(6) -0.1638(3) 0.0374(11) Uani 1 1 d . . . N1 N 0.1930(2) -0.0738(6) -0.0849(3) 0.0311(12) Uani 1 1 d . . . N2 N 0.1971(2) 0.3322(6) 0.1395(3) 0.0356(13) Uani 1 1 d . . . O2 O 0.09319(18) 0.3550(5) 0.0745(3) 0.0414(12) Uani 1 1 d . . . C5 C 0.2412(2) 0.1149(7) 0.0625(4) 0.0281(14) Uani 1 1 d . . . C4 C 0.2687(3) 0.0280(7) 0.0301(4) 0.0284(14) Uani 1 1 d . . . C7 C 0.3262(3) 0.1967(7) 0.1672(4) 0.0329(15) Uani 1 1 d . . . H7 H 0.3453 0.2545 0.2126 0.039 Uiso 1 1 calc R . . C9 C 0.2429(3) -0.0622(7) -0.0424(4) 0.0306(14) Uani 1 1 d . . . H8 H 0.2646 -0.1157 -0.0591 0.037 Uiso 1 1 calc R . . C6 C 0.2709(2) 0.2041(7) 0.1321(3) 0.0288(14) Uani 1 1 d . . . C8 C 0.2467(3) 0.3090(7) 0.1659(4) 0.0333(15) Uani 1 1 d . . . H9 H 0.2694 0.3636 0.2106 0.040 Uiso 1 1 calc R . . C3 C 0.3247(3) 0.0281(8) 0.0689(4) 0.0343(15) Uani 1 1 d . . . H3 H 0.3425 -0.0287 0.0465 0.041 Uiso 1 1 calc R . . C13 C 0.1209(4) 0.4425(13) 0.1428(7) 0.090(4) Uani 1 1 d . . . H12A H 0.1131 0.4076 0.1865 0.108 Uiso 1 1 calc R . . H12B H 0.1071 0.5414 0.1298 0.108 Uiso 1 1 calc R . . C2 C 0.3541(2) 0.1077(7) 0.1379(4) 0.0323(15) Uani 1 1 d . . . C10 C 0.1705(3) -0.1648(9) -0.1593(4) 0.0419(17) Uani 1 1 d . . . H13A H 0.1684 -0.2664 -0.1455 0.050 Uiso 1 1 calc R . . H13B H 0.1926 -0.1591 -0.1878 0.050 Uiso 1 1 calc R . . C11 C 0.1157(3) -0.1052(8) -0.2123(4) 0.0395(17) Uani 1 1 d . . . H14A H 0.1187 -0.0160 -0.2389 0.047 Uiso 1 1 calc R . . H14B H 0.0959 -0.1762 -0.2541 0.047 Uiso 1 1 calc R . . C12 C 0.1767(3) 0.4495(10) 0.1726(5) 0.060(2) Uani 1 1 d . . . H11A H 0.1930 0.4422 0.2316 0.072 Uiso 1 1 calc R . . H11B H 0.1864 0.5435 0.1583 0.072 Uiso 1 1 calc R . . C1 C 0.4138(3) 0.1039(9) 0.1803(5) 0.0483(19) Uani 1 1 d . . . H1A H 0.4262 0.1669 0.2271 0.072 Uiso 1 1 calc R . . H1B H 0.4276 0.1369 0.1435 0.072 Uiso 1 1 calc R . . H1C H 0.4255 0.0056 0.1973 0.072 Uiso 1 1 calc R . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Na1 0.0404(15) 0.0437(17) 0.0374(15) 0.0073(13) 0.0178(12) 0.0070(13) O6 0.056(3) 0.093(5) 0.041(3) -0.004(3) 0.027(3) 0.027(3) O7 0.046(3) 0.074(4) 0.059(4) 0.002(3) 0.021(3) 0.023(3) N3 0.051(4) 0.040(4) 0.040(3) 0.017(3) 0.024(3) 0.016(3) O5 0.059(4) 0.042(3) 0.052(3) -0.004(3) 0.012(3) -0.001(3) O9 0.050(3) 0.040(3) 0.033(2) -0.002(2) 0.020(2) 0.002(2) O10 0.064(3) 0.043(3) 0.043(3) 0.002(2) 0.032(3) 0.003(3) O11 0.046(4) 0.042(4) 0.033(3) 0.000 0.014(3) 0.000 O8 0.066(4) 0.050(3) 0.040(3) 0.008(2) 0.028(3) 0.000(3) O12 0.074(4) 0.050(4) 0.068(4) 0.009(3) 0.049(3) 0.009(3) Cu1 0.0378(5) 0.0294(5) 0.0296(4) -0.0048(3) 0.0167(4) 0.0015(4) Cu2 0.0319(4) 0.0320(5) 0.0236(4) -0.0054(3) 0.0110(3) 0.0012(3) O3 0.029(2) 0.039(3) 0.030(2) -0.012(2) 0.0111(19) -0.003(2) O4 0.031(2) 0.031(3) 0.031(2) -0.0058(19) 0.0121(19) 0.001(2) O1 0.038(3) 0.046(3) 0.025(2) -0.010(2) 0.011(2) 0.000(2) N1 0.040(3) 0.029(3) 0.026(3) -0.006(2) 0.016(2) -0.003(2) N2 0.045(4) 0.029(3) 0.035(3) -0.012(2) 0.019(3) -0.001(3) O2 0.046(3) 0.036(3) 0.050(3) -0.009(2) 0.028(2) 0.004(2) C5 0.034(4) 0.025(3) 0.025(3) 0.003(3) 0.013(3) 0.000(3) C4 0.039(4) 0.022(3) 0.028(3) 0.001(3) 0.018(3) -0.001(3) C7 0.039(4) 0.029(4) 0.023(3) -0.001(3) 0.007(3) -0.008(3) C9 0.034(4) 0.030(4) 0.031(3) -0.006(3) 0.018(3) 0.002(3) C6 0.038(4) 0.027(3) 0.023(3) -0.001(3) 0.014(3) 0.001(3) C8 0.043(4) 0.029(4) 0.023(3) -0.005(3) 0.011(3) -0.004(3) C3 0.038(4) 0.033(4) 0.036(4) 0.003(3) 0.020(3) -0.001(3) C13 0.058(6) 0.092(8) 0.109(9) -0.063(7) 0.027(6) 0.000(6) C2 0.031(3) 0.037(4) 0.029(3) 0.004(3) 0.013(3) -0.002(3) C10 0.052(4) 0.042(4) 0.032(4) -0.012(3) 0.019(3) 0.004(4) C11 0.049(4) 0.044(4) 0.027(3) -0.012(3) 0.018(3) -0.003(3) C12 0.064(6) 0.053(5) 0.065(5) -0.028(4) 0.028(5) 0.009(4) C1 0.033(4) 0.054(5) 0.056(5) -0.010(4) 0.018(4) -0.003(4) _geom_special_details ; All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. ; loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag Na1 O8 2.370(6) . ? Na1 O9 2.409(7) . ? Na1 O9 2.419(6) 5 ? Na1 O6 2.434(7) . ? Na1 O4 2.560(6) . ? Na1 O5 2.573(7) . ? Na1 N3 2.902(7) . ? Na1 Na1 3.340(6) 5 ? Na1 Cu1 3.600(6) . ? O6 N3 1.248(8) . ? O7 N3 1.231(8) . ? N3 O5 1.258(8) . ? O9 Na1 2.419(6) 5 ? Cu1 O2 1.891(5) . ? Cu1 N2 1.917(6) . ? Cu1 O4 1.929(5) . ? Cu1 O3 1.943(5) . ? Cu1 Cu2 2.943(4) . ? Cu2 O1 1.895(5) . ? Cu2 O4 1.926(4) . ? Cu2 N1 1.928(6) . ? Cu2 O3 1.950(5) . ? O3 C5 1.324(7) . ? O1 C11 1.431(8) . ? N1 C9 1.276(8) . ? N1 C10 1.478(8) . ? N2 C8 1.276(8) . ? N2 C12 1.465(9) . ? O2 C13 1.396(10) . ? C5 C4 1.405(9) . ? C5 C6 1.430(9) . ? C4 C3 1.414(9) . ? C4 C9 1.455(9) . ? C7 C2 1.389(9) . ? C7 C6 1.398(9) . ? C6 C8 1.459(9) . ? C3 C2 1.374(9) . ? C13 C12 1.418(12) . ? C2 C1 1.507(9) . ? C10 C11 1.515(10) . ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag O8 Na1 O9 89.8(2) . . ? O8 Na1 O9 85.2(2) . 5 ? O9 Na1 O9 92.48(19) . 5 ? O8 Na1 O6 103.1(2) . . ? O9 Na1 O6 107.2(2) . . ? O9 Na1 O6 158.5(2) 5 . ? O8 Na1 O4 168.6(2) . . ? O9 Na1 O4 79.0(2) . . ? O9 Na1 O4 93.1(2) 5 . ? O6 Na1 O4 82.5(2) . . ? O8 Na1 O5 117.8(2) . . ? O9 Na1 O5 146.4(2) . . ? O9 Na1 O5 107.7(2) 5 . ? O6 Na1 O5 50.8(2) . . ? O4 Na1 O5 73.5(2) . . ? O8 Na1 N3 111.8(2) . . ? O9 Na1 N3 128.8(2) . . ? O9 Na1 N3 133.4(2) 5 . ? O6 Na1 N3 25.15(18) . . ? O4 Na1 N3 77.49(18) . . ? O5 Na1 N3 25.68(17) . . ? O8 Na1 Na1 86.38(19) . 5 ? O9 Na1 Na1 46.36(14) . 5 ? O9 Na1 Na1 46.12(15) 5 5 ? O6 Na1 Na1 152.5(2) . 5 ? O4 Na1 Na1 84.31(17) . 5 ? O5 Na1 Na1 145.24(19) . 5 ? N3 Na1 Na1 161.78(18) . 5 ? O8 Na1 Cu1 145.23(17) . . ? O9 Na1 Cu1 69.47(19) . . ? O9 Na1 Cu1 122.04(16) 5 . ? O6 Na1 Cu1 60.13(19) . . ? O4 Na1 Cu1 31.04(11) . . ? O5 Na1 Cu1 77.02(19) . . ? N3 Na1 Cu1 66.99(17) . . ? Na1 Na1 Cu1 97.54(16) 5 . ? N3 O6 Na1 98.9(5) . . ? O7 N3 O6 121.3(7) . . ? O7 N3 O5 120.4(6) . . ? O6 N3 O5 118.3(6) . . ? O7 N3 Na1 177.2(5) . . ? O6 N3 Na1 56.0(4) . . ? O5 N3 Na1 62.4(4) . . ? N3 O5 Na1 91.9(4) . . ? Na1 O9 Na1 87.52(19) . 5 ? O2 Cu1 N2 87.5(2) . . ? O2 Cu1 O4 100.8(2) . . ? N2 Cu1 O4 171.0(2) . . ? O2 Cu1 O3 174.4(2) . . ? N2 Cu1 O3 91.5(2) . . ? O4 Cu1 O3 80.6(2) . . ? O2 Cu1 Cu2 139.33(16) . . ? N2 Cu1 Cu2 132.31(18) . . ? O4 Cu1 Cu2 40.19(14) . . ? O3 Cu1 Cu2 40.97(13) . . ? O2 Cu1 Na1 89.8(2) . . ? N2 Cu1 Na1 134.50(19) . . ? O4 Cu1 Na1 43.19(16) . . ? O3 Cu1 Na1 94.89(19) . . ? Cu2 Cu1 Na1 68.66(11) . . ? O1 Cu2 O4 101.8(2) . . ? O1 Cu2 N1 87.6(2) . . ? O4 Cu2 N1 170.6(2) . . ? O1 Cu2 O3 171.0(2) . . ? O4 Cu2 O3 80.5(2) . . ? N1 Cu2 O3 90.2(2) . . ? O1 Cu2 Cu1 139.54(15) . . ? O4 Cu2 Cu1 40.27(13) . . ? N1 Cu2 Cu1 130.59(16) . . ? O3 Cu2 Cu1 40.78(14) . . ? C5 O3 Cu1 130.6(4) . . ? C5 O3 Cu2 131.1(4) . . ? Cu1 O3 Cu2 98.2(2) . . ? Cu2 O4 Cu1 99.5(2) . . ? Cu2 O4 Na1 111.7(2) . . ? Cu1 O4 Na1 105.8(2) . . ? C11 O1 Cu2 108.7(4) . . ? C9 N1 C10 121.2(6) . . ? C9 N1 Cu2 128.5(4) . . ? C10 N1 Cu2 110.2(4) . . ? C8 N2 C12 121.6(6) . . ? C8 N2 Cu1 127.9(5) . . ? C12 N2 Cu1 110.4(5) . . ? C13 O2 Cu1 110.7(5) . . ? O3 C5 C4 120.8(6) . . ? O3 C5 C6 120.5(5) . . ? C4 C5 C6 118.7(6) . . ? C5 C4 C3 118.9(6) . . ? C5 C4 C9 123.8(6) . . ? C3 C4 C9 117.2(6) . . ? C2 C7 C6 123.6(6) . . ? N1 C9 C4 125.3(6) . . ? C7 C6 C5 118.6(6) . . ? C7 C6 C8 117.9(6) . . ? C5 C6 C8 123.4(6) . . ? N2 C8 C6 125.6(6) . . ? C2 C3 C4 123.5(6) . . ? O2 C13 C12 117.3(8) . . ? C3 C2 C7 116.6(6) . . ? C3 C2 C1 123.2(6) . . ? C7 C2 C1 120.3(6) . . ? N1 C10 C11 106.8(6) . . ? O1 C11 C10 110.2(5) . . ? C13 C12 N2 112.0(7) . . ? _diffrn_measured_fraction_theta_max 1.000 _diffrn_reflns_theta_full 24.97 _diffrn_measured_fraction_theta_full 1.000 _refine_diff_density_max 1.072 _refine_diff_density_min -0.935 _refine_diff_density_rms 0.174