Supplementary Material (ESI) for Molecular BioSystems This journal is © The Royal Society of Chemistry 2009 The list of genes that are predicted to be conditionally essential Gene Number of essential conditions aaea 12 aaeb 5 aaer 56 aat 52 acca 60 accb 60 accc 40 acee 60 acef 60 acek 1 acps 44 acra 60 acrb 47 acrd 44 acre 8 acrf 14 adk 60 afuc 10 allb 2 alr 47 alsa 15 alse 9 alsk 3 amia 60 amib 49 amic 39 ampd 58 ampe 57 ampg 38 apag 60 apah 53 apt 48 arac 1 arag 16 arcb 31 arga 33 argb 33 argc 6 arge 58 argh 16 argr 53 args 2 arnt 4 aroa 59 arob 45 aroc 23 arod 36 aroe 29 arof 54 arog 11 arok 59 arol 38 artp 48 asd 60 asma 58 asns 9 asps 60 aste 1 atoc 31 atos 27 atpa 58 atpb 56 atpc 31 atpe 31 atpf 60 atph 54 baer 58 baes 25 bara 17 basr 43 bass 50 bcp 52 bfd 29 bfr 42 bioa 3 biob 36 bioc 3 biod 47 bioh 29 bira 56 bola 58 btub 49 btud 29 cada 2 cara 37 carb 32 cbl 34 cca 48 ccmb 7 ccmc 8 ccme 11 ccmf 22 ccmg 2 ccmh 19 cdd 34 cdsa 43 chez 26 cira 31 clps 60 cmk 60 coad 46 coae 57 cobb 3 copa 39 cpxa 59 crea 26 creb 37 crp 60 cspd 9 cspe 1 csra 25 cuer 24 cusa 1 cusr 31 cvpa 54 cyay 59 cybb 12 cysa 11 cysb 58 cyse 52 cysm 28 cysp 20 cysq 17 cyss 51 cysz 57 dacb 7 dacc 59 dacd 46 dada 18 dapa 20 dapb 32 dape 56 dapf 50 dcd 44 ddpc 4 ddpd 31 ddpf 40 dedd 44 def 58 degp 57 degs 56 deoa 32 deob 24 deoc 31 dfp 49 dgka 49 dgsa 4 dgt 51 dhar 37 ding 39 djla 32 dksa 59 dnab 32 dnaj 56 dnak 35 dnan 54 dnaq 57 dos 33 dppf 1 dsba 33 dsbb 60 dsbc 51 dsbg 31 dsdc 1 dtd 48 dusb 58 dusc 25 dut 55 dxs 60 efp 59 emra 43 emre 1 emrk 6 envz 49 epd 59 erfk 50 evga 39 exbb 26 exbd 45 faba 48 fabb 58 fabf 60 fabg 37 fabh 40 fabi 5 fabr 48 fabz 59 fadb 8 fadd 1 fade 29 fadl 41 fadr 44 fdhe 41 fdx 54 feca 35 fece 17 fecr 1 fepc 17 ffh 60 fhla 2 fhuc 19 fhue 5 fief 52 fimd 2 fis 55 fklb 13 fkpa 57 flga 14 flgb 24 flgc 4 flgd 23 flge 15 flgf 16 flgh 19 flgi 1 flgj 13 flgk 29 flia 38 flie 2 flif 34 flig 31 flih 31 flij 26 flik 18 flil 7 flim 18 flin 6 flir 11 fnr 45 fola 20 folc 57 fold 50 fole 52 folk 44 folp 49 folx 58 fpr 60 fre 58 frr 60 frur 4 frvx 12 ftsa 59 ftsb 59 ftse 56 ftsk 60 ftsl 45 ftsn 56 ftsq 54 ftsw 39 ftsx 52 ftsy 57 fur 60 fusa 60 gadb 1 gale 1 galu 53 gapa 60 gcva 41 gcvr 60 gidb 46 glcd 3 glk 2 glmm 49 glms 57 glmu 42 glne 26 glng 49 glnl 58 glnq 39 gloa 58 glob 53 glpg 13 glpq 2 glta 50 gltb 6 gltl 1 gltx 60 glya 20 glyq 58 glys 60 gmhb 59 gmk 60 gmr 29 gnty 39 grea 43 greb 37 grpe 45 grxa 15 grxc 50 gsha 56 gsk 6 gspd 7 gspe 1 gspo 22 guaa 47 gutq 8 gyra 60 gyrb 60 hcar 12 hcat 30 hda 46 hdha 17 held 31 hema 49 hemb 50 hemc 8 heme 53 hemf 14 hemg 7 hemh 35 heml 36 hemy 60 hepa 27 hflx 59 hint 5 hisa 1 hisb 39 hisc 23 hisd 33 hisf 31 hisg 47 hisi 39 hisp 15 hiss 27 hns 51 hofc 13 hofq 19 holb 53 holc 53 hpt 45 hrpa 40 hrpb 24 hscb 52 hsds 1 hslo 60 hslr 60 hslu 59 hslv 59 htrg 58 hupb 54 hycb 1 iles 54 ilva 44 ilvc 56 ilvd 35 ilve 21 ilvh 37 ilvi 49 ilvm 58 ilvy 18 imp 44 infa 58 infb 60 infc 60 ints 49 intz 8 isca 60 iscr 57 iscs 49 ispa 45 ispb 24 ispd 47 ispe 56 ispf 42 isph 16 ispu 60 kch 18 kdpe 17 kdsa 59 kdsb 48 kdsd 37 kefa 10 ksga 60 ldcc 21 lepb 59 leub 17 leuc 25 leud 40 leuo 1 leus 60 lexa 60 liga 59 ligt 7 lipa 45 lipb 46 livg 5 lnt 29 lolb 44 lolc 57 lole 59 lon 60 lpca 12 lpxa 60 lpxb 55 lpxc 60 lpxk 21 lspa 56 lsra 12 lysa 50 lysc 20 lysr 13 lyss 28 lysu 3 maca 52 macb 2 maeb 2 malt 13 map 60 mazg 46 mdob 3 mdtb 22 mdtc 23 mdte 16 mdtf 21 menc 16 mend 9 metb 7 metf 19 metg 51 meth 49 metj 40 metl 14 metn 9 metr 39 mfd 40 miab 33 minc 57 mind 6 mine 54 mioc 42 mipa 51 mlta 57 mltb 58 mltc 60 mntr 12 moab 10 moac 33 moad 4 mode 46 modf 1 moea 16 moeb 9 mota 22 motb 1 mpl 60 mray 42 mrca 48 mrcb 39 mrda 58 mrdb 60 mreb 54 mrec 52 mred 29 msba 45 mtga 59 mtr 22 mukb 4 murc 60 murd 55 mure 59 murf 56 murg 55 muri 53 muth 21 mutl 59 mutm 45 muts 57 muty 43 nac 17 nada 32 nadb 42 nadc 48 nadd 60 nade 38 nadr 49 nagb 2 nagd 55 napb 1 napc 6 narl 17 narp 27 narq 9 ndk 6 nfi 2 nfo 26 nhaa 9 nhab 56 nhar 49 nikb 8 nikd 18 nike 4 nikr 5 nlpi 33 npr 41 nrda 45 nrdb 58 nrfe 24 nrff 8 nrfg 7 nth 34 nude 49 nudf 48 nuoa 23 nuoc 11 nuoe 12 nuog 59 nuoh 6 nuoi 22 nuoj 41 nuol 2 nuom 2 nuon 1 nusa 59 nusb 58 nusg 58 ogt 6 ompc 27 ompn 21 ompr 60 ompw 28 oppd 38 oppf 36 orn 54 osmy 36 oxyr 26 paay 2 paba 8 pabc 2 pal 60 panb 59 pand 43 parc 45 pare 36 pbpc 19 pbpg 48 pcm 57 pcnb 60 pdhr 5 pdxa 53 pdxh 2 pdxj 29 pdxy 42 pepb 1 pepq 1 perr 19 pfka 49 pgi 14 pgk 34 pgm 1 pgpa 54 pgpb 24 pgsa 49 phea 56 phob 49 phoe 39 phoh 31 phop 57 phoq 8 phor 46 phou 43 plda 41 pldb 50 plsb 60 plsc 52 plsx 57 pmba 59 pnuc 16 polb 49 pota 49 potg 9 ppa 10 ppc 6 ppdd 13 ppha 10 ppia 40 ppib 57 ppic 27 ppk 10 pppa 20 pqia 44 pqql 5 prc 60 prfa 55 prfb 60 pria 42 prib 60 prkb 60 prlc 54 prma 39 proa 45 prob 54 proc 40 proq 39 pros 60 psd 57 pspb 2 pspc 2 pspf 9 pssa 58 pta 56 pth 51 ptsh 3 ptsn 54 pura 32 purb 60 purc 58 purd 48 pure 1 purf 56 purh 59 purl 60 purm 25 purn 56 puru 24 puta 20 pykf 40 pyrb 58 pyrc 36 pyrd 39 pyre 43 pyrf 55 pyrg 47 pyrh 60 pyri 54 qseb 25 qsec 20 quea 57 rada 28 rard 5 rbfa 58 rbn 16 rcsb 39 rcsc 50 rcsd 29 rdgc 53 reca 56 recb 51 recc 22 recd 9 recf 59 recg 57 recj 53 recn 53 reco 58 recq 47 recr 34 recx 27 rela 58 rep 57 rfac 54 rfad 39 rfae 44 rfaf 59 rfaq 7 rfbd 18 rfe 14 rhas 1 rho 60 rhtc 20 riba 31 ribb 37 ribc 38 ribd 58 ribf 45 rimi 19 rimm 58 rlmb 49 rlpa 60 rlua 11 rlub 60 rluc 54 rnb 33 rnd 47 rne 44 rnha 55 rnhb 46 rnpa 58 rnt 40 rpe 60 rpia 30 rpib 3 rplb 59 rplc 60 rpld 58 rplf 60 rpli 48 rplj 60 rplk 60 rpll 43 rplm 58 rpln 58 rplo 60 rplq 60 rplr 60 rplt 58 rplu 57 rplv 60 rplw 60 rplx 32 rply 50 rpma 51 rpmb 55 rpmc 18 rpme 56 rpmf 60 rpmg 42 rpmh 26 rpmi 60 rpoa 59 rpob 60 rpoc 60 rpoe 59 rpon 60 rpos 53 rpse 60 rpsf 57 rpsh 60 rpsi 56 rpsj 24 rpsk 60 rpsl 57 rpsm 60 rpso 56 rpsq 1 rpsr 60 rpss 22 rpst 52 rpsu 58 rrma 1 rrmj 30 rsmb 59 rsmc 10 rsta 24 rstb 19 rsua 49 rtcb 1 rtn 28 ruma 57 ruva 44 ruvb 58 ruvc 52 sana 3 sapd 11 sapf 19 sbcb 52 sbcc 6 sbcd 2 sdha 21 sdhb 24 sdhc 57 sdhd 57 secb 58 secg 41 seqa 55 sera 60 serb 17 sers 13 sfmd 3 sgcx 13 sgrr 12 sira 1 sixa 54 slma 52 slp 22 slt 58 slyb 44 slyd 44 slyx 47 smg 54 smpb 58 smta 29 sohb 59 spec 37 spef 3 ssb 52 ssna 2 sspa 60 sspb 58 sstt 53 ssub 16 stpa 35 suca 60 sucb 13 succ 58 sucd 48 sufa 16 suhb 49 sura 60 sure 40 tada 37 tag 16 tata 60 tatb 59 tatc 42 taub 7 tdca 11 tdcf 6 tehb 47 tesa 41 thid 21 thie 44 thig 50 thii 50 thil 56 thip 23 thiq 31 thra 58 thrc 58 thrs 42 thya 50 tig 51 tils 42 tkta 60 tktb 57 tmk 48 tnab 13 tolc 42 tolr 55 tonb 53 topb 5 torr 12 tors 6 tort 3 tory 4 trg 37 trka 59 trkh 12 trma 34 trmh 21 trpa 37 trpb 58 trpc 60 trpd 34 trpe 44 trpr 7 trps 58 trua 55 trub 59 trxa 48 trxb 48 tsf 60 ttdb 1 tyra 27 tyrp 16 tyrr 52 tyrs 39 ubia 47 ubib 60 ubic 55 ubid 60 ubie 55 ubif 33 ubih 35 ubix 44 udk 32 ugd 14 ugpc 2 uhpa 34 uhpb 5 ung 50 upp 32 usg 17 uspa 51 uspe 44 uup 12 uvra 56 uvrb 59 uvrd 56 uvry 13 vacj 51 vals 60 visc 59 wza 20 wzc 1 xapa 11 xerc 43 xerd 32 xni 13 xsea 22 xseb 30 xtha 58 xylg 1 yaaa 50 yacg 28 yadd 11 yade 31 yadg 54 yadh 55 yadr 14 yaej 2 yaeq 36 yaet 54 yafc 44 yafd 54 yafj 52 yafk 1 yafs 55 yage 8 yagf 13 yahb 15 yahi 4 yahn 15 yaii 25 yail 53 yajc 60 yajd 33 yajq 3 yajr 40 ybab 55 ybae 5 ybak 4 ybap 4 ybav 1 ybaw 12 ybay 26 ybba 34 ybbl 40 ybbn 56 ybbp 23 ybdh 12 ybea 46 ybeb 36 ybed 32 ybef 5 ybet 3 ybey 55 ybff 33 ybgc 48 ybgi 45 ybgq 2 ybha 21 ybhg 22 ybhk 19 ybip 31 ybis 52 ybiv 3 ybje 23 ybjg 34 ybji 7 ybjl 7 ybjr 32 ybjx 25 ycai 47 ycal 4 ycan 1 ycao 52 ycar 41 ycbb 17 ycbc 33 ycbl 3 ycbx 57 ycbz 46 yccs 35 yccu 12 yccw 43 yccx 6 ycdy 48 ycea 7 yced 38 yceg 26 ycej 15 ycfh 17 ycfj 31 ycfs 42 ycgf 1 ycgl 34 ycgm 5 ycgn 52 ycha 49 ychf 59 ychj 53 ychq 43 ycia 1 ycih 7 ycii 50 ycio 49 ycjf 19 ycjx 17 ycjz 16 ydal 29 ydam 7 yddv 5 ydem 2 ydfg 4 ydga 43 ydgj 10 ydhb 6 ydhj 7 ydhl 17 ydhy 14 ydia 59 ydib 11 ydij 1 ydik 2 ydiu 45 ydja 48 yeac 60 yead 50 yeap 2 yeat 18 yeay 48 yeaz 37 yebc 57 yebs 44 yebt 57 yecc 25 yecn 26 yedv 3 yedw 26 yedz 6 yeea 2 yeen 30 yeey 43 yegh 50 yegq 48 yehb 3 yeia 2 yeie 29 yeip 47 yejk 53 yfad 35 yfae 51 yfay 37 yfbr 45 yfbs 14 yfbt 21 yfbv 59 yfce 39 yfcf 11 yfci 1 yfcm 25 yfcn 54 yfdz 30 yffb 16 yfgb 53 yfgc 53 yfgd 44 yfgl 60 yfgm 60 yfgo 41 yfha 28 yfhd 46 yfhk 35 yfhl 24 yfhm 1 yfib 9 yfic 12 yfie 15 yfif 41 yfih 31 yfin 1 yfip 3 yfjf 54 yfjg 43 ygad 21 ygcf 42 ygcn 27 ygco 8 ygde 59 ygdh 59 ygdl 29 yger 58 ygfa 46 ygfb 60 ygfs 3 ygfy 56 yggg 36 yggl 58 yggs 54 yggt 54 yggu 15 yggw 59 yggx 58 ygif 58 ygih 32 ygiw 16 ygjd 29 ygjg 37 yhak 2 yhbj 7 yhbs 19 yhbt 48 yhbx 2 yhby 51 yhcm 38 yhdz 1 yhem 38 yhen 59 yheo 9 yhes 60 yhet 37 yheu 45 yhfk 41 yhhy 26 yhii 1 yhin 47 yhiq 16 yhir 31 yhjc 22 yhjh 30 yhjj 29 yhjk 25 yiad 27 yiat 17 yibf 22 yibh 9 yibk 27 yibn 48 yibq 38 yicc 58 yidc 16 yiek 6 yifb 26 yife 42 yiga 58 yigb 37 yigm 40 yigp 53 yigz 20 yihi 46 yiid 47 yiir 3 yiiu 34 yijp 4 yjag 45 yjbq 11 yjee 51 yjef 40 yjep 56 yjes 55 yjga 59 yjgf 51 yjgp 50 yjgq 43 yjhg 19 yjhh 24 yjjb 6 yjjk 19 yjjp 32 yjjx 36 yjtd 22 ylab 5 ylig 53 ylij 17 ymba 15 ynbb 3 ynef 15 ynfl 1 ynhg 57 ynia 5 ynic 18 ynjd 8 yoaa 47 yoad 2 yodb 5 yohf 3 ypde 8 ypdf 5 ypfi 56 yphe 10 yphh 4 ypjd 60 yqaa 37 yqca 11 yqcc 47 yqge 54 yqgf 38 yqia 50 yqic 59 yraj 3 yral 53 yram 60 yran 49 yrap 52 yrba 56 yrbc 59 yrbd 57 yrbe 39 yrbf 58 yrbg 8 yrbk 59 yrda 11 yrfg 55 ytfl 37 ytfm 58 ytfn 55 zapa 59 zipa 57 zntr 8 znub 10 znuc 33 zrar 14