Supplementary Information for
"Power graph compression reveals dominant relationships in genetic transcription networks"
Sebastian E. Ahnert
Cavendish Laboratory, University of Cambridge

=============================
S. cerevisiae
=============================

Set1a:
MBP1 SWI4 SWI6 
3
GO:0000083	2.05754260827808E-4	regulation of transcription involved in G1/S phase of mitotic cell cycle
GO:0005667	3.905502163342205E-4	transcription factor complex
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0031974	0.00513874920163652	membrane-enclosed lumen
GO:0000082	0.00630252100840354	G1/S transition of mitotic cell cycle
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set1b:
SPT21 SOK2 RBA50 MNN5 SNA2 CLA4 HCM1 MPT5 YGR109W-B TOS2 TOS3 YGR189C CAP1 PEX28 CLN1 SCW10 AGE1-B GIN4 PPN1 SKG6 PCL1 LSM4 YOX1 YMR279C GID8 PET54 GAT2 MCD1 MGA1 SWE1 YPR159W RNR1 PDR16 YGR109C YDR524W-A BUD9 tA(AGC)P AGE1 GIC1 LAC1 YGR109W-A GIC2 YHP1 GAS1 SWI4 FKS3 SPO20 
47
GO:0022402	1.6859093753833607E-4	cell cycle process
GO:0051301	1.8667585022907554E-4	cell division
GO:0000131	3.02602994491707E-4	incipient cellular bud site
GO:0007049	3.1625955712225306E-4	cell cycle
GO:0031323	0.0016011148027448565	regulation of cellular metabolic process
GO:0008360	0.001669837086867016	regulation of cell shape
GO:0050794	0.0018215083583885709	regulation of cellular process
GO:0006468	0.002104201496476225	protein phosphorylation
GO:0050789	0.002303014197122903	regulation of biological process
GO:0030427	0.0023566214034776234	site of polarized growth
GO:0000003	0.002635027367923313	reproduction
GO:0051726	0.003428899258869689	regulation of cell cycle
GO:0007163	0.0034742504381599865	establishment or maintenance of cell polarity
GO:0019222	0.004384457436058185	regulation of metabolic process
GO:0060277	0.004524886877828076	negative regulation of transcription involved in G1 phase of mitotic cell cycle
GO:0005933	0.004786957388831965	cellular bud
GO:0016740	0.00507874112716429	transferase activity
GO:0080090	0.005820928413403279	regulation of primary metabolic process
GO:0033121	0.0064153969526866425	regulation of purine nucleotide catabolic process
GO:0030478	0.006696832579185488	actin cap
GO:0001191	0.006734006734006697	RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription
GO:0040007	0.007120912406203667	growth
GO:0065009	0.008778470663626204	regulation of molecular function

Set2a:
STE12 DIG1 
2
GO:0009373	4.925865720900028E-4	regulation of transcription by pheromones
GO:0016049	7.537372806834754E-4	cell growth
GO:0046019	9.447331128955547E-4	regulation of transcription from RNA polymerase II promoter by pheromones
GO:0040007	0.0015492594070577977	growth
GO:0045996	0.0037023324694557703	negative regulation of transcription by pheromones
GO:0071444	0.006988120195667344	cellular response to pheromone
GO:0046020	0.008503401360544272	negative regulation of transcription from RNA polymerase II promoter by pheromones

Set2b:
CWP1 SUT1 YEL1 SST2 YKL209C YCL056C PRM6 SRL3 SWE1 CLB1 VTI1 PRM3 ATG19 YKR041W CLA4 HYM1 GYP8 SIM1 SCW10 ACT1 FUS3 FUS1 ERG24 YGR189C DIG1 SVS1 tK(UUU)G2 GIC2 MSB2 SKT5 PRM1 BEM2 INP52 CST6 FKS3 MSG5 YLR332W YJU2 CHS1 GID8 CAM1 BUD8 ORC2 FIG1 GAT2 TEC1 SEC2 CIK1 RDI1 PEP1 FUS2 PCL2 tK(UUU)P YIL015W GFA1 SSF2 GPA1 SCH9 AFR1 BUD14 KAR4 CLB2 RAX2 ADE1 HAL1 UBC4 STE12 MNN5 STE2 YML046W RAD54 YKL096C-B tR(UCU)M1 PRM2 CUP9 tA(AGC)K2 CBT1 PRM4 
78
GO:0051704	6.348446343965666E-14	multi-organism process
GO:0030427	7.592086719478504E-11	site of polarized growth
GO:0000003	2.647849922477638E-10	reproduction
GO:0044463	1.7987747127401564E-7	cell projection part
GO:0042995	1.7987747127401564E-7	cell projection
GO:0022414	6.355971230303703E-7	reproductive process
GO:0000131	1.1852615836110663E-6	incipient cellular bud site
GO:0023052	1.735090320552783E-6	signaling
GO:0048610	1.7551127830156246E-6	cellular process involved in reproduction
GO:0032989	3.5812306247233787E-6	cellular component morphogenesis
GO:0050790	4.195827466354087E-6	regulation of catalytic activity
GO:0065009	5.902298637061936E-6	regulation of molecular function
GO:0019236	7.747960773835867E-6	response to pheromone
GO:0060089	8.956531884666151E-6	molecular transducer activity
GO:0050789	1.3036556877088447E-5	regulation of biological process
GO:0005933	2.730116009822895E-5	cellular bud
GO:0071944	3.554661938147793E-5	cell periphery
GO:0048583	3.8300775830663245E-5	regulation of response to stimulus
GO:0007163	4.5360381511786084E-5	establishment or maintenance of cell polarity
GO:0006022	4.9167249102448106E-5	aminoglycan metabolic process
GO:0030234	5.028102771315977E-5	enzyme regulator activity
GO:0071840	5.053765094606336E-5	cellular component organization or biogenesis
GO:0048284	6.703391425809468E-5	organelle fusion
GO:0010033	7.28678217750271E-5	response to organic substance
GO:0044430	7.676265040358352E-5	cytoskeletal part
GO:0065007	9.643447631347371E-5	biological regulation
GO:0009966	9.672757412724681E-5	regulation of signal transduction
GO:0022604	1.2340328990291868E-4	regulation of cell morphogenesis
GO:0043085	1.3052518856359298E-4	positive regulation of catalytic activity
GO:0006997	1.3875348398307652E-4	nucleus organization
GO:0023051	1.5295073768123807E-4	regulation of signaling
GO:0000749	1.7014807555802144E-4	response to pheromone involved in conjugation with cellular fusion
GO:0044093	2.0267051468354883E-4	positive regulation of molecular function
GO:0050794	2.705943299597409E-4	regulation of cellular process
GO:0005856	3.188897504896101E-4	cytoskeleton
GO:0050896	4.0191179242861006E-4	response to stimulus
GO:0050793	4.932430484820183E-4	regulation of developmental process
GO:0004872	6.263212021364234E-4	receptor activity
GO:0046039	6.472294777971868E-4	GTP metabolic process
GO:0019222	6.485996102446173E-4	regulation of metabolic process
GO:0048869	7.285032818328132E-4	cellular developmental process
GO:0032502	7.595335721286323E-4	developmental process
GO:0007154	8.905731594896446E-4	cell communication
GO:0051301	9.590810326104253E-4	cell division
GO:0007165	0.0010786463286129025	signal transduction
GO:0005887	0.001081146074337624	integral to plasma membrane
GO:0032879	0.0010923460323321425	regulation of localization
GO:0006184	0.001466501582746799	GTP catabolic process
GO:0045996	0.0014778290873216616	negative regulation of transcription by pheromones
GO:0006140	0.0014947906978427911	regulation of nucleotide metabolic process
GO:0019953	0.001642291539134067	sexual reproduction
GO:0008360	0.0017681563313088357	regulation of cell shape
GO:0051716	0.0019583720765201824	cellular response to stimulus
GO:0000742	0.002015564337876142	karyogamy involved in conjugation with cellular fusion
GO:0046020	0.0021002850724008274	negative regulation of transcription from RNA polymerase II promoter by pheromones
GO:0051345	0.0022042418551873498	positive regulation of hydrolase activity
GO:0022603	0.0022751564563598544	regulation of anatomical structure morphogenesis
GO:0032880	0.0023864294142476386	regulation of protein localization
GO:0003924	0.002494066925056093	GTPase activity
GO:0040007	0.0025623130341453216	growth
GO:0005886	0.0026442303482975883	plasma membrane
GO:0031226	0.0026457624241249147	intrinsic to plasma membrane
GO:0000747	0.002701007096410808	conjugation with cellular fusion
GO:0046019	0.002980374525778123	regulation of transcription from RNA polymerase II promoter by pheromones
GO:0009373	0.0030645691884869488	regulation of transcription by pheromones
GO:0030811	0.0031380609992314786	regulation of nucleotide catabolic process
GO:0030031	0.0031826192167075276	cell projection assembly
GO:0035382	0.003193033381712517	sterol transmembrane transport
GO:0010008	0.0032471376064502006	endosome membrane
GO:0051128	0.0032893864272352732	regulation of cellular component organization
GO:0000910	0.0033871763039202904	cytokinesis
GO:0030533	0.0036005465324704263	triplet codon-amino acid adaptor activity
GO:0030030	0.003640468436178723	cell projection organization
GO:0000755	0.0037258912916423217	cytogamy
GO:0044459	0.004279354665719896	plasma membrane part
GO:0006970	0.004376836618994373	response to osmotic stress
GO:0032005	0.004647207739045877	signal transduction involved in conjugation with cellular fusion
GO:0031323	0.004718113619098883	regulation of cellular metabolic process
GO:0033121	0.006034919983039325	regulation of purine nucleotide catabolic process
GO:0009371	0.00634808675718595	positive regulation of transcription by pheromones
GO:0007329	0.006405856783344733	positive regulation of transcription from RNA polymerase II promoter by pheromones
GO:0006397	0.006411108585739541	mRNA processing
GO:0080090	0.006567779076187625	regulation of primary metabolic process
GO:0048585	0.00695450214436519	negative regulation of response to stimulus
GO:0051336	0.007019638600661363	regulation of hydrolase activity
GO:0005819	0.007224655986808768	spindle
GO:0051049	0.007566702694908065	regulation of transport
GO:0007017	0.007577621639190674	microtubule-based process
GO:0072665	0.007692307692307714	protein localization to vacuole
GO:0000271	0.007893665548888916	polysaccharide biosynthetic process
GO:0051293	0.007994186046511345	establishment of spindle localization
GO:0070882	0.008986942781403696	cellular cell wall organization or biogenesis
GO:0005681	0.009015215856823976	spliceosomal complex
GO:0010927	0.009035832385998137	cellular component assembly involved in morphogenesis
GO:0023057	0.009366261609063299	negative regulation of signaling
GO:0000753	0.009446384688538877	cell morphogenesis involved in conjugation with cellular fusion
GO:0060589	0.009780410866847078	nucleoside-triphosphatase regulator activity

Set3a:
MSN2 MSN4 
2
GO:0051599	6.961364427426753E-5	response to hydrostatic pressure
GO:0051409	6.961364427426753E-5	response to nitrosative stress
GO:0009415	8.599931200549083E-5	response to water
GO:0071500	1.4005602240896732E-4	cellular response to nitrosative stress
GO:0071464	1.4005602240896732E-4	cellular response to hydrostatic pressure
GO:0071462	1.903674090995587E-4	cellular response to water
GO:0009409	2.0639834881319274E-4	response to cold
GO:0007569	3.4097638888061987E-4	cell aging
GO:0070417	4.2016806722690173E-4	cellular response to cold
GO:0071241	0.001120238984316606	cellular response to inorganic substance
GO:0007571	0.002347417840375607	age-dependent general metabolic decline
GO:0071214	0.0027648611285658476	cellular response to abiotic stimulus
GO:0006971	0.003076923076923083	hypotonic response
GO:0045471	0.003389830508474593	response to ethanol
GO:0034605	0.0035555555555555622	cellular response to heat
GO:0032502	0.003999906105494663	developmental process
GO:0043620	0.005193385267185533	regulation of DNA-dependent transcription in response to stress
GO:0071470	0.005366726296958866	cellular response to osmotic stress
GO:0036003	0.005656565656565672	positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0071361	0.0056818181818181785	cellular response to ethanol
GO:0042594	0.0059101654846328636	response to starvation
GO:0009268	0.0069686411149826695	response to pH
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0009408	0.008255933952527736	response to heat
GO:0009267	0.009352517985610884	cellular response to starvation

Set3b:
PST2 CUE4 PEX32 VOA1 SSA1 RPA14 LST8 SSA4 BMH1 HSP78 IST2 DDR48 HSP30 UPF3 TDH3 TPK1 RRI2 POG1 MCH4 TVP23 CCP1 GPH1 MRH1 SKM1 SIS1 tL(GAG)G RFC5 YOL114C STF2 POP7 HER1 CPR1 AMD1 HSP42 ASK1 TSL1-A MDH1 GRE3 tG(GCC)P2 GND2 PCL7 AFR1 LAP4 YML006C ISU2 YGR071C MRS4 SFK1 YPR159W GPI17 MMF1 ZWF1 HSP26 tE(UUC)E1 GPT2 YGP1 YPR159C-A CWP1 FMP48 tA(AGC)P PDC6 snR18 HSL1 SRC1 YKL096C-B ETP1 ROD1 TSL1 CTT1 YGR255C EFB1 GTO3-A 
72
GO:0051082	0.0020638962488011337	unfolded protein binding
GO:0005832	0.0022798332464823443	chaperonin-containing T-complex
GO:0042744	0.0053837871096751614	hydrogen peroxide catabolic process
GO:0031301	0.006889010794557284	integral to organelle membrane
GO:0022838	0.006908115358819631	substrate-specific channel activity
GO:0050661	0.007245048532685868	NADP binding
GO:0072593	0.007564437879139093	reactive oxygen species metabolic process
GO:0003723	0.007616661543681017	RNA binding
GO:0006839	0.007773247913026506	mitochondrial transport
GO:0031300	0.00823666241401718	intrinsic to organelle membrane
GO:0031647	0.008503203261502586	regulation of protein stability
GO:0000267	0.009844414862414566	cell fraction

Set4a:
RAP1 FHL1 
2
GO:0032545	0.006079027355622685	CURI complex
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set4b:
RTA1 RPL16B RPS17A RPL23B snR17a RPS17B SST2 RPS9B FPS1 RPL5 GFD2 RPL9A RKI1 RPS11B RPS5 RPS18B RPS29B BDF1 UTP6 RPS15 RPL1B TEF2 YML6 SLX8 RPS19A TEF1 ATG27 HMS2 FRE8 RPS6B YGK3 RPS6A RPL20B YGR149W RPS0B RPL20A MRM2 RPS4A RPS4B RPL36B RPL17A RPL17B RPS26A ADA2 YMR242W-A TKL2 MNL1 RPP2A RPS8B SRO9 RPL24B AST2 RPL2B RPL38 RPL8B SMC2-A RPL32 RPS18A ROX3 RPS0A RPL36A RPL25 YLR326W TSR1 NTC20 RPS7A RPS7B RPL33B RPL12B ASC1 YGL188C-A 
71
GO:0030529	1.398138526895421E-37	ribonucleoprotein complex
GO:0005840	5.459197607680238E-37	ribosome
GO:0044391	4.922224618295351E-36	ribosomal subunit
GO:0044445	1.956024311227342E-33	cytosolic part
GO:0005198	2.568239260477821E-33	structural molecule activity
GO:0006412	7.344942735806687E-23	translation
GO:0005829	2.1000213946324026E-20	cytosol
GO:0043228	9.371591820998495E-19	non-membrane-bounded organelle
GO:0043232	9.371591820998495E-19	intracellular non-membrane-bounded organelle
GO:0015934	7.138380299591246E-17	large ribosomal subunit
GO:0015935	6.484943356962244E-16	small ribosomal subunit
GO:0032991	2.9423502303099434E-14	macromolecular complex
GO:0019538	6.43946853988765E-13	protein metabolic process
GO:0002181	3.650711727154453E-12	cytoplasmic translation
GO:0071843	3.4376675794705206E-10	cellular component biogenesis at cellular level
GO:0022626	6.343891079230831E-10	cytosolic ribosome
GO:0044267	1.0773098152391232E-9	cellular protein metabolic process
GO:0003735	1.5243507537981882E-9	structural constituent of ribosome
GO:0051236	2.3557108934963315E-9	establishment of RNA localization
GO:0070925	7.960816229673187E-9	organelle assembly
GO:0044446	8.481094639067143E-9	intracellular organelle part
GO:0010467	2.9758729419502072E-8	gene expression
GO:0009059	3.692106363525212E-8	macromolecule biosynthetic process
GO:0015931	3.782645067090506E-8	nucleobase-containing compound transport
GO:0034645	1.0620314170734931E-7	cellular macromolecule biosynthetic process
GO:0044422	1.753014798942373E-7	organelle part
GO:0006403	1.7868455644454054E-7	RNA localization
GO:0044085	1.2781261805833296E-6	cellular component biogenesis
GO:0044237	2.6727754511580903E-6	cellular metabolic process
GO:0044260	3.3780086367995746E-6	cellular macromolecule metabolic process
GO:0034660	3.607436717090877E-6	ncRNA metabolic process
GO:0043170	6.588060081906336E-6	macromolecule metabolic process
GO:0051169	2.6072478518416017E-5	nuclear transport
GO:0071826	4.548981345045438E-5	ribonucleoprotein complex subunit organization
GO:0090305	7.660802360838922E-5	nucleic acid phosphodiester bond hydrolysis
GO:0044444	9.327990829387003E-5	cytoplasmic part
GO:0003723	1.3509103807024254E-4	RNA binding
GO:0008152	1.8150682455812442E-4	metabolic process
GO:0042274	3.824621159257294E-4	ribosomal small subunit biogenesis
GO:0044249	8.614539696767808E-4	cellular biosynthetic process
GO:0009058	9.531138003089781E-4	biosynthetic process
GO:0046907	0.0014502996874848353	intracellular transport
GO:0022613	0.001922947783897379	ribonucleoprotein complex biogenesis
GO:0051649	0.0020956983494230252	establishment of localization in cell
GO:0043229	0.0027296332595321497	intracellular organelle
GO:0033036	0.005262154010523616	macromolecule localization
GO:0043933	0.005288467060309872	macromolecular complex subunit organization
GO:0016072	0.0059509430101180386	rRNA metabolic process
GO:0006450	0.007654735000364369	regulation of translational fidelity
GO:0006740	0.00812032766170356	NADPH regeneration

Set5a:
FKH1 FKH2 
2
GO:0000117	1.0287713041390398E-4	regulation of transcription involved in G2/M-phase of mitotic cell cycle
GO:0034243	2.7956388034664826E-4	regulation of transcription elongation from RNA polymerase II promoter
GO:0032784	2.9264010144855744E-4	regulation of transcription elongation, DNA-dependent
GO:0001558	4.610875078220663E-4	regulation of cell growth
GO:0040008	5.245137320609129E-4	regulation of growth
GO:0051090	5.958291956305599E-4	regulation of sequence-specific DNA binding transcription factor activity
GO:0030308	6.939625260235604E-4	negative regulation of cell growth
GO:0090282	7.166746297181001E-4	positive regulation of transcription involved in G2/M-phase of mitotic cell cycle
GO:0000114	7.201399128973288E-4	regulation of transcription involved in G1 phase of mitotic cell cycle
GO:0016049	7.537372806834754E-4	cell growth
GO:0016458	8.67396076977019E-4	gene silencing
GO:0045926	9.578544061301818E-4	negative regulation of growth
GO:0060968	0.0013068610203567448	regulation of gene silencing
GO:0040007	0.0015492594070577977	growth
GO:0035326	0.0017307026652821546	enhancer binding
GO:0001158	0.0017633574325516535	enhancer sequence-specific DNA binding
GO:0006354	0.001937984496123857	transcription elongation, DNA-dependent
GO:0006368	0.002315963606285996	transcription elongation from RNA polymerase II promoter
GO:0031935	0.003842175262302035	regulation of chromatin silencing
GO:0060277	0.004524886877828076	negative regulation of transcription involved in G1 phase of mitotic cell cycle
GO:0065009	0.00457892224752647	regulation of molecular function
GO:0000980	0.00466200466200465	RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0005667	0.005628517823639318	transcription factor complex
GO:0003705	0.006734006734006697	sequence-specific distal enhancer binding RNA polymerase II transcription factor activity
GO:0051128	0.00763425380622143	regulation of cellular component organization
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set5b:
TEL2 IDI1 PNP1 RSP5 KIP2 HTS1 CLB2 YCR075W-A VTI1 CLB4 PDS1 HHT1 BDF1 RIM4 CDC39 SSO2 ECM33 ADD37 HOS3 ESP1 CTS1 SCW11 DSE1 YHP1 VAC17 RKM3 MSH3 YNL176C SLM4 BUD4 NST1 YBR139W BUD8 YDR115W tK(UUU)P CIK1 ECM19-A HHF1 YAP6 AMN1 ARP7 RNR1 SPB1 YBR138C ERS1 JSN1 ICS2 CDS1 DIN7 tA(AGC)L DBF2 CHA1 YLR257W MK22 GLN1 PPN1 SBE22 SPC24 
58
GO:0007049	1.6399880957430835E-5	cell cycle
GO:0022402	9.67733657788173E-5	cell cycle process
GO:0051656	4.8096096427174573E-4	establishment of organelle localization
GO:0005815	5.805588706828672E-4	microtubule organizing center
GO:0032886	6.341471458013161E-4	regulation of microtubule-based process
GO:0010008	8.995956522608601E-4	endosome membrane
GO:0051301	9.699147713884555E-4	cell division
GO:0007017	9.760383220205138E-4	microtubule-based process
GO:0005819	0.001302705839989827	spindle
GO:0016090	0.0013169446883230993	prenol metabolic process
GO:0048285	0.001981304773448638	organelle fission
GO:0044440	0.0029731861434048427	endosomal part
GO:0044430	0.004187009085678255	cytoskeletal part
GO:0005933	0.0043410010206153555	cellular bud
GO:0006333	0.004634147772499287	chromatin assembly or disassembly
GO:0033043	0.00507829334785959	regulation of organelle organization
GO:0015630	0.0055524920237887	microtubule cytoskeleton
GO:0016091	0.0056818181818181785	prenol biosynthetic process
GO:0000786	0.006993006993006884	nucleosome
GO:0005881	0.0072735975284694	cytoplasmic microtubule
GO:0051640	0.0073352508474726534	organelle localization
GO:0003774	0.007998357764106321	motor activity
GO:0008299	0.008470403069560832	isoprenoid biosynthetic process
GO:0006996	0.00937164305241524	organelle organization
GO:0034728	0.009485674751505335	nucleosome organization

Set6a:
PHD1 SOK2 
2
GO:0016049	7.537372806834754E-4	cell growth
GO:0040007	0.0015492594070577977	growth
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set6b:
YER034W USV1 RAD16 MSN4 SOK2 UTR2 VHR1 snR3 RBA50 RPS3 AGE1 IZH3 TPO2 SNA2 CIN5 ZRG8 RHO3 YBR071W PRR2 RHO5 APT2 YPR013C CPR8 SCW10 SIT4 AGE1-B SPO20 YKL063C RPI1 GAC1 GID8 RSF2 GAT2 SET4 MGA1 ALG14 YBL029C-A SCW4 PET9 DFG16 FLO10 HAP4 CYC8 YPR063C YDR524W-A ROX1 KTI12 CUP9 CBF2 GIC2 STP4 ACA1 SPO73 FKS3 YBL029W 
55
GO:0031323	5.31511641393451E-4	regulation of cellular metabolic process
GO:0016757	0.0010136658831846987	transferase activity, transferring glycosyl groups
GO:0050794	0.001029885194087075	regulation of cellular process
GO:0009889	0.0012395190524723122	regulation of biosynthetic process
GO:0051171	0.0019772511996760415	regulation of nitrogen compound metabolic process
GO:0031326	0.0026222173106099345	regulation of cellular biosynthetic process
GO:0032774	0.0026403376794799016	RNA biosynthetic process
GO:0051051	0.002716295434753291	negative regulation of transport
GO:0019222	0.002772068719104643	regulation of metabolic process
GO:0051049	0.0035600781986651437	regulation of transport
GO:0071555	0.003979842086121689	cell wall organization
GO:0015833	0.004100523126851024	peptide transport
GO:0045229	0.004454392563773519	external encapsulating structure organization
GO:0035950	0.005196032120926206	regulation of oligopeptide transport by regulation of transcription from RNA polymerase II promoter
GO:0080090	0.005820928413403279	regulation of primary metabolic process
GO:0003677	0.008130845032175855	DNA binding
GO:0035952	0.008503401360544198	negative regulation of oligopeptide transport by negative regulation of transcription from RNA polymerase II promoter
GO:0019219	0.008663528702375042	regulation of nucleobase-containing compound metabolic process
GO:0071554	0.00971492559855589	cell wall organization or biogenesis
GO:0010468	0.009835218461992964	regulation of gene expression

Set7a:
MSN2 ROX1 SOK2 ACE2 SKN7 ASH1 NDD1 
7
GO:0001071	2.868711752705094E-6	nucleic acid binding transcription factor activity
GO:0050789	3.5055379734817737E-4	regulation of biological process
GO:0031323	4.307304007614707E-4	regulation of cellular metabolic process
GO:0050794	5.624123299697319E-4	regulation of cellular process
GO:0019222	5.954200545511292E-4	regulation of metabolic process
GO:0080090	6.567367848695359E-4	regulation of primary metabolic process
GO:0065007	7.301058499006774E-4	biological regulation
GO:0032774	0.0013061843385543882	RNA biosynthetic process
GO:0051171	0.0014929739897344366	regulation of nitrogen compound metabolic process
GO:0009889	0.0017628397040291878	regulation of biosynthetic process
GO:0060255	0.0023769385322563942	regulation of macromolecule metabolic process
GO:0001067	0.0025289094976635156	regulatory region nucleic acid binding
GO:0031326	0.00257560631144518	regulation of cellular biosynthetic process
GO:0019219	0.004417604191566779	regulation of nucleobase-containing compound metabolic process
GO:0048518	0.005243928072870034	positive regulation of biological process
GO:0006351	0.007810657506841606	transcription, DNA-dependent
GO:0048522	0.008183874987613145	positive regulation of cellular process
GO:0009059	0.009786451754017909	macromolecule biosynthetic process

Set7b:
PMC1 YDR524W-A AGE1 YGL007C-A RBA50 PMA1 PMC1-A SNA2 AGE1-B 
9

Set8a:
YAP6 CIN5 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set8b:
YPR148C SBP1 MMT1 SOK2 SUN4 SMP1 tD(GUC)K RPS3 HSP30 KEL2 TDH3 POG1 APT2 RHO5 SMP1-A HMS2 YPR013C VTC2 SPO20 RPS4A YPC1 YIR018C-A NCE102 GAC1 MIG3 YHB1 MGA1 YKR039W HAP4 YPR063C YEA6 ROX1 KTI12 PHD1 PHO81 ACA1 SPO73 YPR127W YKR038C 
39
GO:0060255	5.899911313186182E-4	regulation of macromolecule metabolic process
GO:0080090	7.510875018045362E-4	regulation of primary metabolic process
GO:0031323	0.0012762521129937516	regulation of cellular metabolic process
GO:0050794	0.0030551683875336263	regulation of cellular process
GO:0042326	0.0030864197530864647	negative regulation of phosphorylation
GO:0001071	0.004577912269471574	nucleic acid binding transcription factor activity
GO:0051171	0.005370435218284784	regulation of nitrogen compound metabolic process
GO:0045936	0.009640259232988594	negative regulation of phosphate metabolic process

Set9a:
CBF1 YOR344C 
2
GO:0044262	0.007859271080281276	cellular carbohydrate metabolic process
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0090153	0.008264462809916032	regulation of sphingolipid biosynthetic process

Set9b:
BOI2 ACP1 PUT3 YMR196W RSP5 BMH1 MNN5 TDH2 BRE5 MET22 ATM1 HRR25 NCP1 DSE1 AZR1 SRB2 MET10 PGC1 ATP3 ABP1 ATP7 HSV2 SWE1 IML1 MET3 DPH2 MET5 PRS2 DRS2 UBC6 YCR087C-A CSL4 GAR1 
33
GO:0044272	3.091806637535544E-4	sulfur compound biosynthetic process
GO:0016820	4.330283556605311E-4	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
GO:0043412	4.680813732615763E-4	macromolecule modification
GO:0044283	8.504147593117464E-4	small molecule biosynthetic process
GO:0009337	9.517649611305526E-4	sulfite reductase complex (NADPH)
GO:0019904	0.0010847347863922369	protein domain specific binding
GO:0006790	0.0017031933682750584	sulfur compound metabolic process
GO:0006464	0.00354404757874505	protein modification process
GO:0060627	0.004303455713107424	regulation of vesicle-mediated transport
GO:0043176	0.006492589621869964	amine binding
GO:0031406	0.006492589621869964	carboxylic acid binding
GO:0007010	0.007326149299571146	cytoskeleton organization
GO:0016053	0.00742961441271393	organic acid biosynthetic process
GO:0009067	0.00967585873246247	aspartate family amino acid biosynthetic process
GO:0032386	0.009815304037154351	regulation of intracellular transport

Set10a:
RCS1 AFT2 
2

Set10b:
LYP1 HMX1 ALP1 ZWF1 SDS23 MMT1 LAP4 FAA1 CCC2 ATX1 COT1 YNL260C HER1 FTH1 GTS1 OLE1 MND1 LSM5 COT1-A YLR177W ISU2 ISU1 MRS4 PRB1 AFT1 YPR063C ROX1 RFX1 HSL1 ENT2 FTR1 SUE1 GIP3 
33
GO:0019725	4.434390377497606E-6	cellular homeostasis
GO:0055085	0.0013346241284004476	transmembrane transport
GO:0065008	0.0020275741228694645	regulation of biological quality
GO:0051186	0.002476424041548503	cofactor metabolic process
GO:0005215	0.002910466022730542	transporter activity
GO:0030001	0.003074037080909792	metal ion transport
GO:0051234	0.004233696631470292	establishment of localization
GO:0034755	0.0048914219256064135	iron ion transmembrane transport
GO:0006811	0.005103091400024292	ion transport
GO:0061024	0.007105264666629162	membrane organization
GO:0033573	0.007692307692307591	high affinity iron permease complex
GO:0051179	0.008312848424983922	localization

Set11a:
GCN4 RTG3 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set11b:
ICY2 UGA3 MRPS17 VHR1 YAP1801 COX9 SPO75 GLT1 YAH1 YMR1 YHR162W ARO1 FMP48 GCV2 YHR071W ORC3 HIS4 ISU1 HIS7 PDR8 BOP2 ARG1 ARG3 IDP1 CPA2 ARG5,6 GIP3 VMA13-A GTO3-A 
29
GO:0006520	1.2587011769469925E-6	cellular amino acid metabolic process
GO:0044271	1.1002875965612445E-5	cellular nitrogen compound biosynthetic process
GO:0042180	1.848419335644992E-5	cellular ketone metabolic process
GO:0044106	2.2482456070426033E-5	cellular amine metabolic process
GO:0009308	7.653186600639498E-5	amine metabolic process
GO:0006082	8.603894217784418E-5	organic acid metabolic process
GO:0016053	1.1007093221321662E-4	organic acid biosynthetic process
GO:0009084	6.025855398191824E-4	glutamine family amino acid biosynthetic process
GO:0044283	8.504147593117464E-4	small molecule biosynthetic process
GO:0005759	8.951352767508243E-4	mitochondrial matrix
GO:0005739	0.0015458705592815778	mitochondrion
GO:0016491	0.0029952974932914676	oxidoreductase activity
GO:0009064	0.003607259632718307	glutamine family amino acid metabolic process
GO:0051287	0.004963890448834155	NAD binding
GO:0006547	0.00718825766264036	histidine metabolic process
GO:0051540	0.007749125590817559	metal cluster binding

Set12a:
SKN7 SUT1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0034764	0.008510638297871676	positive regulation of transmembrane transport

Set12b:
YPR148C USV1 MSN4 CCW12 ECM4 SOK2 RPS3 RMI1 RHO3 OLE1 RHO5 YLR113W SPO20 YKL063C RPI1 NCE102 YKR075C GID8 GAT2 SET4 MGA1 ADH3 HAP4 SDS23 KTI12 ISF1 SKS1 
27
GO:0019222	0.0052653054693813164	regulation of metabolic process
GO:0007154	0.00872595777531953	cell communication
GO:0050789	0.009663820336922323	regulation of biological process

Set13a:
INO4 INO2 
2
GO:0019637	0.0010752657584745687	organophosphate metabolic process
GO:0008654	0.0019415985572312402	phospholipid biosynthetic process
GO:0044255	0.003661258837925632	cellular lipid metabolic process
GO:0006629	0.006809315521930216	lipid metabolic process
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0008610	0.009269356597604242	lipid biosynthetic process

Set13b:
snR17a ITR1 YAK1 KEL2 RKM3 FAA1 RPB4 COT1 PSD1 KNH1 ADO1 UBX6 FAS1 SOD1 FAS2 COT1-A SAH1 PWP2 TIM23 INO1 RPL33B SRO77 CDS1 SWI5 EKI1 ACC1 
26
GO:0044255	7.873854578392987E-6	cellular lipid metabolic process
GO:0006629	8.378201203731517E-5	lipid metabolic process
GO:0008610	1.1037033291044543E-4	lipid biosynthetic process
GO:0005835	3.256904637832354E-4	fatty acid synthase complex
GO:0008654	0.0017139857358346462	phospholipid biosynthetic process
GO:0019637	0.00333563420521688	organophosphate metabolic process
GO:0034471	0.00466200466200465	ncRNA 5'-end processing
GO:0045017	0.004921165891329846	glycerolipid biosynthetic process
GO:0031369	0.005494505494505476	translation initiation factor binding
GO:0044429	0.006681372602540711	mitochondrial part
GO:0042439	0.007519945031873874	ethanolamine-containing compound metabolic process
GO:0051091	0.008064516129032091	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0000966	0.008395953150581377	RNA 5'-end processing
GO:0005739	0.009617512171009156	mitochondrion
GO:0032787	0.009734866639957165	monocarboxylic acid metabolic process

Set14a:
CBF1 ABF1 
2
GO:0090153	0.008264462809916032	regulation of sphingolipid biosynthetic process

Set14b:
RPN4 PUT3 MSH3 RSP5 KTR1 VTI1 BET3 CDC39 ULP2 VTC1 SMX2 FLC2 YER071C NCE103 LSM4 ATP7 IDH1 ACS1 CIK1 LPD1 SKY1 IML1 MET1 MET5 DSE1 NUP1 GUA1 BCY1 SWI4 
29
GO:0016208	0.0012903225806450956	AMP binding
GO:0032991	0.0019540308201642575	macromolecular complex
GO:0016071	0.0046129437323842466	mRNA metabolic process
GO:0051050	0.0070636957619000735	positive regulation of transport
GO:0006082	0.007103089190682496	organic acid metabolic process
GO:0044248	0.00761171892613376	cellular catabolic process
GO:0042180	0.008826596853900564	cellular ketone metabolic process

Set15a:
SWI5 ACE2 
2
GO:0000114	7.201399128973288E-4	regulation of transcription involved in G1 phase of mitotic cell cycle
GO:2001041	0.0057803468208086255	regulation of cytokinetic cell separation involved in cell cycle cytokinesis
GO:2001043	0.0073529411764705266	positive regulation of cytokinetic cell separation involved in cell cycle cytokinesis

Set15b:
CUE4 RPA14 BMH1 EGT2 RUP1 MDJ2 SFL1 TPM1 CTS1 SCW11 CPR1 TSL1-A YJL160C PCL2 BUD9 HSP150 AMN1 NIS1 AIM38 ICS2 TSL1 GTO3-A 
22
GO:0005933	7.029425313752066E-5	cellular bud
GO:0051301	8.590960207353504E-5	cell division
GO:0005576	2.3506550264770673E-4	extracellular region
GO:0030312	3.7325469259151897E-4	external encapsulating structure
GO:0022402	0.0013517889848945223	cell cycle process
GO:0000910	0.0018809009932791217	cytokinesis
GO:0071944	0.0022013230860774254	cell periphery
GO:0051726	0.002877934217089799	regulation of cell cycle
GO:0007049	0.0038833573959959496	cell cycle
GO:0006022	0.004271548436308276	aminoglycan metabolic process
GO:0005199	0.004516711833784948	structural constituent of cell wall
GO:0005515	0.005487092127784048	protein binding
GO:0016798	0.006705163460440222	hydrolase activity, acting on glycosyl bonds
GO:0007163	0.006948831373018142	establishment or maintenance of cell polarity
GO:0030427	0.007074507488771542	site of polarized growth
GO:0016049	0.0085850220942885	cell growth
GO:0032506	0.009481895252457701	cytokinetic process

Set16a:
NDD1 MCM1 FKH2 
3
GO:0000117	3.077740818216149E-4	regulation of transcription involved in G2/M-phase of mitotic cell cycle
GO:0090282	7.166746297181001E-4	positive regulation of transcription involved in G2/M-phase of mitotic cell cycle
GO:0007049	0.002854576561163024	cell cycle
GO:0000988	0.004331065137782144	protein binding transcription factor activity

Set16b:
YNL058C ALK1 BUD4 UTH1 tK(UUU)P SPO12 CLB2 IRC8 JSN1 OCA2 SWI5 EKI1 MTC6 
13
GO:0007049	9.820901996504656E-4	cell cycle
GO:0022402	0.003485425498305914	cell cycle process
GO:0051654	0.008695652173913082	establishment of mitochondrion localization

Set17a:
YAP7 YAP1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set17b:
TRX2 YNL134C LSB6 ADH6 SOD1 OYE3 DRE2 YHB1 GLR1 DAP1 CCS1 IBA57 MRS4 ADO1 RPL10 BUD20 GSH1 PHO81 CYT2 SRX1 
20
GO:0016209	8.501877179137017E-6	antioxidant activity
GO:0006979	2.803232277178101E-5	response to oxidative stress
GO:0031970	3.649422775405556E-5	organelle envelope lumen
GO:0016491	2.6492666720454873E-4	oxidoreductase activity
GO:0055114	4.93934521729755E-4	oxidation-reduction process
GO:0034599	6.325983477806764E-4	cellular response to oxidative stress
GO:0044429	0.0010614617013589049	mitochondrial part
GO:0003824	0.0018114578912630187	catalytic activity
GO:0005758	0.003086294596661931	mitochondrial intermembrane space
GO:0042221	0.005074016260252296	response to chemical stimulus
GO:0045454	0.005184891990023525	cell redox homeostasis
GO:0043167	0.006014348282996359	ion binding
GO:0072593	0.006548894408145608	reactive oxygen species metabolic process
GO:0006518	0.006548894408145608	peptide metabolic process
GO:0051091	0.008064516129032091	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0016661	0.00984952120383052	oxidoreductase activity, acting on other nitrogenous compounds as donors
GO:0016721	0.00984952120383052	oxidoreductase activity, acting on superoxide radicals as acceptor
GO:0016265	0.009934075633296917	death

Set18a:
MSN2 HAP4 ARG81 NRG1 SUT1 RAP1 ROX1 SOK2 PHD1 LEU3 YAP6 SWI6 SKO1 
13
GO:0001071	1.6647071928824738E-12	nucleic acid binding transcription factor activity
GO:0000988	1.1967496464892064E-7	protein binding transcription factor activity
GO:0050789	3.5560641832021167E-7	regulation of biological process
GO:0031323	5.093862397075174E-7	regulation of cellular metabolic process
GO:0050794	8.541859998217127E-7	regulation of cellular process
GO:0019222	9.387556734568057E-7	regulation of metabolic process
GO:0080090	1.1174456154677209E-6	regulation of primary metabolic process
GO:0065007	1.4042609355137798E-6	biological regulation
GO:0032774	3.928721663617042E-6	RNA biosynthetic process
GO:0051171	5.073757834059394E-6	regulation of nitrogen compound metabolic process
GO:0009889	6.935515709067212E-6	regulation of biosynthetic process
GO:0060255	1.2222491136380247E-5	regulation of macromolecule metabolic process
GO:0031326	1.4078756459167061E-5	regulation of cellular biosynthetic process
GO:0003676	1.6764907204323187E-5	nucleic acid binding
GO:0048518	2.7429231919745863E-5	positive regulation of biological process
GO:0019219	3.847218872466983E-5	regulation of nucleobase-containing compound metabolic process
GO:0008134	4.073135376476444E-5	transcription factor binding
GO:0001067	4.522207036795166E-5	regulatory region nucleic acid binding
GO:0048522	6.737040852187941E-5	positive regulation of cellular process
GO:0006351	1.1100753001509326E-4	transcription, DNA-dependent
GO:0048519	1.1422454953947234E-4	negative regulation of biological process
GO:0009893	1.241859441357698E-4	positive regulation of metabolic process
GO:0009059	1.7596798974489674E-4	macromolecule biosynthetic process
GO:0031325	1.7740919676928206E-4	positive regulation of cellular metabolic process
GO:0048523	1.9832566075134175E-4	negative regulation of cellular process
GO:0034645	2.4367457957073552E-4	cellular macromolecule biosynthetic process
GO:0016070	2.619251688190462E-4	RNA metabolic process
GO:0010468	3.2533696091083253E-4	regulation of gene expression
GO:0051252	5.474829169435537E-4	regulation of RNA metabolic process
GO:0010556	6.803038700018747E-4	regulation of macromolecule biosynthetic process
GO:0006139	8.219424381726186E-4	nucleobase-containing compound metabolic process
GO:0005634	8.443189073449892E-4	nucleus
GO:0005488	0.0010547361386345645	binding
GO:0003700	0.0012737374783156421	sequence-specific DNA binding transcription factor activity
GO:0051173	0.0013018243022024703	positive regulation of nitrogen compound metabolic process
GO:0009892	0.001476629073104277	negative regulation of metabolic process
GO:0031324	0.0015930368906159112	negative regulation of cellular metabolic process
GO:0010604	0.001593494383668184	positive regulation of macromolecule metabolic process
GO:0009058	0.0016552003100635845	biosynthetic process
GO:2000112	0.0017333120700137978	regulation of cellular macromolecule biosynthetic process
GO:0003677	0.0018962332978384882	DNA binding
GO:0044249	0.002099931765221337	cellular biosynthetic process
GO:0006807	0.0025371360975015764	nitrogen compound metabolic process
GO:0009891	0.002555133250567211	positive regulation of biosynthetic process
GO:0051049	0.002567394094993388	regulation of transport
GO:0031328	0.0030422424362690553	positive regulation of cellular biosynthetic process
GO:0034641	0.003398219742433028	cellular nitrogen compound metabolic process
GO:0045935	0.003918917762160268	positive regulation of nucleobase-containing compound metabolic process
GO:0001078	0.0044208978416965805	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0016049	0.004639393481829346	cell growth
GO:0051172	0.00543394748310948	negative regulation of nitrogen compound metabolic process
GO:0043170	0.005596273891321141	macromolecule metabolic process
GO:0005667	0.005628517823639318	transcription factor complex
GO:0010467	0.0066173791596154646	gene expression
GO:0044260	0.00669669250650479	cellular macromolecule metabolic process
GO:0010605	0.007239891832856169	negative regulation of macromolecule metabolic process
GO:0051716	0.007451899354378515	cellular response to stimulus
GO:0010628	0.008263277728717922	positive regulation of gene expression
GO:0009890	0.008433713149440329	negative regulation of biosynthetic process
GO:0000975	0.008572881089982302	regulatory region DNA binding
GO:0005515	0.009073633057125946	protein binding
GO:0031327	0.009849600310552762	negative regulation of cellular biosynthetic process

Set18b:
YBL029W PET9 YBL029C-A 
3
GO:0008219	0.008982035928142435	cell death

Set19a:
SWI4 SWI6 TEC1 
3
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0000988	0.004331065137782144	protein binding transcription factor activity
GO:0005667	0.005628517823639318	transcription factor complex
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set19b:
SIM1 SRL1 CWP2 PCL2 YGR189C CWP1 MSB2 PET54 MNN5 UTR2 TOS2 YOR246C GIC2 GID8 GAT2 SWE1 YKL096C-B SVS1 PCL1 
19
GO:0030312	1.6496212133637075E-6	external encapsulating structure
GO:0005576	1.1476225083995643E-5	extracellular region
GO:0000131	3.042714522740452E-5	incipient cellular bud site
GO:0071944	5.8726787630490187E-5	cell periphery
GO:0030427	1.3541950167680547E-4	site of polarized growth
GO:0032878	4.406256884776601E-4	regulation of establishment or maintenance of cell polarity
GO:0005933	6.391455601488623E-4	cellular bud
GO:0007163	6.761880930475287E-4	establishment or maintenance of cell polarity
GO:0031225	8.422995978368306E-4	anchored to membrane
GO:0051726	0.0014229684696589063	regulation of cell cycle
GO:0019899	0.0015582943759739228	enzyme binding
GO:0000307	0.0015611931778422934	cyclin-dependent protein kinase holoenzyme complex
GO:0070882	0.0032069296656661484	cellular cell wall organization or biogenesis
GO:0071555	0.003497473345894279	cell wall organization
GO:0045229	0.003868764588308948	external encapsulating structure organization
GO:0071554	0.003877860530574516	cell wall organization or biogenesis
GO:0006022	0.004271548436308276	aminoglycan metabolic process
GO:0005199	0.004516711833784948	structural constituent of cell wall
GO:0004693	0.004966746456458573	cyclin-dependent protein kinase activity
GO:0051301	0.007399706240905801	cell division
GO:0032268	0.00788933387374662	regulation of cellular protein metabolic process
GO:0051246	0.009357652601972872	regulation of protein metabolic process

Set20a:
CBF1 MET32 MET4 
3
GO:0006790	4.3143145070793245E-5	sulfur compound metabolic process
GO:0000988	5.5072581225204377E-5	protein binding transcription factor activity
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0006520	0.0013294098984061088	cellular amino acid metabolic process
GO:0006082	0.002754100520386723	organic acid metabolic process
GO:0042180	0.0030598633630377486	cellular ketone metabolic process
GO:0044106	0.004788670758258734	cellular amine metabolic process
GO:0044272	0.005280528052805514	sulfur compound biosynthetic process
GO:0009308	0.006880809314624022	amine metabolic process
GO:0000096	0.0093838745524139	sulfur amino acid metabolic process

Set20b:
MET10 MET2 MET2-A LSB6 IES5 SUL2 USO1 MET6 GSH1 RAD59 
10
GO:0044272	2.7100989984904758E-6	sulfur compound biosynthetic process
GO:0006790	2.0087822055286845E-5	sulfur compound metabolic process
GO:0016053	1.9546363390313392E-4	organic acid biosynthetic process
GO:0044283	5.397751553505787E-4	small molecule biosynthetic process
GO:0006520	0.0017969882824115714	cellular amino acid metabolic process
GO:0044271	0.0019490044828478232	cellular nitrogen compound biosynthetic process
GO:0044106	0.003441236088952942	cellular amine metabolic process
GO:0006082	0.004523204602732419	organic acid metabolic process
GO:0042180	0.005161445357459197	cellular ketone metabolic process
GO:0009308	0.005482535210045088	amine metabolic process

Set21a:
GLN3 GAT1 
2
GO:0019740	8.606996705876708E-5	nitrogen utilization
GO:0006808	6.737031214911323E-4	regulation of nitrogen utilization
GO:0009719	7.653409867431321E-4	response to endogenous stimulus
GO:0090293	0.0013656538067599359	nitrogen catabolite regulation of transcription
GO:0001079	0.0014170996693433336	nitrogen catabolite regulation of transcription from RNA polymerase II promoter
GO:0090294	0.0017633574325516535	nitrogen catabolite activation of transcription
GO:0042126	0.007511717145976385	nitrate metabolic process
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set21b:
CAN1 NPR2 DAN4 YJR151W-A AIM6 DCG1 DIP5 DAL5 DAL4 DAL7 CHA1 AVT1 DAL2 RRI2 GUD1 MCH4 DAL1 VAC17 
18
GO:0043603	3.950110589133584E-7	cellular amide metabolic process
GO:0000255	5.91174035219254E-7	allantoin metabolic process
GO:0006725	6.640349319877897E-7	cellular aromatic compound metabolic process
GO:0000256	1.384167340294693E-6	allantoin catabolic process
GO:0009112	3.546801274692613E-6	nucleobase metabolic process
GO:0043605	4.1525020208840845E-6	cellular amide catabolic process
GO:0006144	8.536174972825695E-6	purine base metabolic process
GO:0071705	4.3085500910209793E-5	nitrogen compound transport
GO:0016810	3.872632932913269E-4	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0044437	6.644635686092732E-4	vacuolar part
GO:0005773	7.815340298055473E-4	vacuole
GO:0005774	0.0015015896986248624	vacuolar membrane
GO:0055085	0.0016901495083380983	transmembrane transport
GO:0071702	0.0017067568966351368	organic substance transport
GO:0005215	0.0020535361830019663	transporter activity
GO:0023051	0.006078299273897744	regulation of signaling
GO:0008180	0.006079027355622685	signalosome
GO:0009966	0.006802379157241481	regulation of signal transduction
GO:0016020	0.006968927171206933	membrane
GO:0009308	0.00813817149661063	amine metabolic process
GO:0046483	0.009009222450684837	heterocycle metabolic process
GO:0072521	0.009591297469073974	purine-containing compound metabolic process
GO:0044425	0.009851991017881935	membrane part

Set22a:
ABF1 UME6 
2
GO:0034389	0.008368200836818863	lipid particle organization

Set22b:
PUT3 YOR020W-A HSP10 POL31 GDS1 CAT8 YBR284W DHR2 MSC6 YKL190W FLC2 NUS1 ARO3 HUA1 LSM4 ACS1 ATP7 SSH1 RNP1 GPI12 YTA7 SWI4 YJR005C-A 
23
GO:0005783	0.0037274598862876464	endoplasmic reticulum
GO:0044432	0.007105446227081963	endoplasmic reticulum part
GO:0042175	0.0071989748876364985	nuclear outer membrane-endoplasmic reticulum membrane network
GO:0005789	0.00857714587383216	endoplasmic reticulum membrane

Set23a:
REB1 RPN4 
2

Set23b:
RPN2 REB1 EPL1 RPT1 PUP1 RPA14 SEC66 RET2 PET123 PRE9 PRE3 NPL4 RPN12 PRE4 BUD27 CPR1 OST1 
17
GO:0000502	4.893938255895681E-9	proteasome complex
GO:0032991	8.503735417448537E-8	macromolecular complex
GO:0005839	8.820854397064314E-7	proteasome core complex
GO:0044265	4.2150263999469575E-6	cellular macromolecule catabolic process
GO:0009057	8.690167879217241E-6	macromolecule catabolic process
GO:0031597	1.2297163818454766E-5	cytosolic proteasome complex
GO:0042175	1.5184750027337847E-5	nuclear outer membrane-endoplasmic reticulum membrane network
GO:0019774	1.674172193274816E-5	proteasome core complex, beta-subunit complex
GO:0012505	2.366873003235371E-5	endomembrane system
GO:0044257	3.3963712800788405E-5	cellular protein catabolic process
GO:0030163	4.529527682092334E-5	protein catabolic process
GO:0019538	1.1841108855856962E-4	protein metabolic process
GO:0008233	1.274546012114666E-4	peptidase activity
GO:0005838	3.332461121737356E-4	proteasome regulatory particle
GO:0022624	3.332461121737356E-4	proteasome accessory complex
GO:0006508	3.508795860111309E-4	proteolysis
GO:0005789	3.917433806460602E-4	endoplasmic reticulum membrane
GO:0044445	6.514876699542831E-4	cytosolic part
GO:0044432	0.0010523353389109199	endoplasmic reticulum part
GO:0008540	0.0016365303493843886	proteasome regulatory particle, base subcomplex
GO:0043170	0.0024977883873963636	macromolecule metabolic process
GO:0005783	0.002679372841119487	endoplasmic reticulum
GO:0044260	0.003072721713739966	cellular macromolecule metabolic process
GO:0044267	0.0031284567257160723	cellular protein metabolic process
GO:0018193	0.003861265411190997	peptidyl-amino acid modification
GO:0070003	0.007756545513982548	threonine-type peptidase activity
GO:0045184	0.007952298730165114	establishment of protein localization
GO:0043248	0.008692903429745562	proteasome assembly
GO:0015031	0.00894147835371245	protein transport
GO:0008144	0.00895522388059644	drug binding

Set24a:
HAP5 HAP3 HAP2 
3
GO:0043467	3.880994593068554E-5	regulation of generation of precursor metabolites and energy
GO:0045990	1.6255356878970366E-4	carbon catabolite regulation of transcription
GO:0000429	2.2667341649728785E-4	carbon catabolite regulation of transcription from RNA polymerase II promoter
GO:0005667	3.905502163342205E-4	transcription factor complex
GO:0000436	4.315460135936882E-4	carbon catabolite activation of transcription from RNA polymerase II promoter
GO:0006091	5.402929169237903E-4	generation of precursor metabolites and energy
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0007154	0.0011213935764833173	cell communication
GO:0043457	0.0011853959222380302	regulation of cellular respiration
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0009605	0.002368573871612081	response to external stimulus
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0007584	0.0024928385559030257	response to nutrient
GO:0055114	0.002863378616088628	oxidation-reduction process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0016602	0.004127966976264197	CCAAT-binding factor complex
GO:0031668	0.00476068553871796	cellular response to extracellular stimulus
GO:0031974	0.00513874920163652	membrane-enclosed lumen
GO:0031670	0.005282179594106165	cellular response to nutrient
GO:0051716	0.008384515738521489	cellular response to stimulus
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set24b:
CCC1 SMF2-A COX6 COX4 PHO81 YHB1 GRX4 TYW1 ISA1 
9
GO:0051540	1.4053476073320507E-4	metal cluster binding
GO:0043167	6.506955162474056E-4	ion binding
GO:0045277	7.398158005841283E-4	respiratory chain complex IV
GO:0016491	8.7971985971935E-4	oxidoreductase activity
GO:0055114	9.161752027763018E-4	oxidation-reduction process
GO:0018130	0.0026243986369017757	heterocycle biosynthetic process
GO:0070469	0.005191169597948426	respiratory chain
GO:0044429	0.005479360529088836	mitochondrial part
GO:0046483	0.005965177569133459	heterocycle metabolic process

Set25a:
ASH1 MCM1 SOK2 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0016049	0.0022220175034543205	cell growth
GO:0040007	0.004529765547119604	growth
GO:2000242	0.005376344086021723	negative regulation of reproductive process
GO:0051093	0.005747126436781691	negative regulation of developmental process
GO:0045596	0.006849315068493371	negative regulation of cell differentiation

Set25b:
POG1 YJL160C PCL1 YMR122W-A UTH1 HSP150 RPL15B SCW10 PKR1 FKS3 
10
GO:0005576	1.418848254777298E-4	extracellular region
GO:0030312	2.579137028392939E-4	external encapsulating structure
GO:0071944	0.006686183737611366	cell periphery
GO:0071841	0.0073288058408922906	cellular component organization or biogenesis at cellular level
GO:0000148	0.007692307692307168	1,3-beta-D-glucan synthase complex

Set26a:
UME6 REB1 
2
GO:0034389	0.004184100418409662	lipid particle organization
GO:0051039	0.0095238095238093	positive regulation of transcription during meiosis

Set26b:
VPS30 GOS1 ECM29 TIF3 SUB1 YET2 HSC82 tK(UUU)P CLB2 MMS1 SPO16 GPI12 CAT8 APL4 MEI5 RTT107 CSR2 
17
GO:0010529	4.272895598917574E-4	negative regulation of transposition
GO:0010528	0.0020236863063564613	regulation of transposition
GO:0016192	0.0021112721352449498	vesicle-mediated transport
GO:0005515	0.005487092127784048	protein binding
GO:0043170	0.005596273891321141	macromolecule metabolic process
GO:0044260	0.00669669250650479	cellular macromolecule metabolic process
GO:0032196	0.007149419067823651	transposition
GO:0000151	0.007332862731141299	ubiquitin ligase complex

Set27a:
NRG1 SKN7 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set27b:
USV1 YER010C IRC22 RMI1 NRG1 KNH1 NRG2 FMP48 CHS1 HEM13 GID8 GAT2 ISU2 AMN1 HER1 YER011W ADH3 HAP4 ICS2 MNN1 KTI12 ISF1 SKS1 GTO3-A 
24
GO:0042710	0.0015015015015015039	biofilm formation
GO:0000429	0.002105327059777428	carbon catabolite regulation of transcription from RNA polymerase II promoter
GO:0045990	0.004954142370348944	carbon catabolite regulation of transcription
GO:0031670	0.005282179594106165	cellular response to nutrient
GO:0007584	0.00905008780077832	response to nutrient

Set28a:
ABF1 RPN4 
2

Set28b:
CDC39 MSH3 NUP49 NPR1 RPN8 PUP2 UBP6 ENO1 AIM46 KEM1 RAD50 YOR262W POL31 RPN10 NRD1 YJR005C-A SEM1 RAD23 
18
GO:0044265	2.7507105472154377E-10	cellular macromolecule catabolic process
GO:0009057	2.969074135713791E-9	macromolecule catabolic process
GO:0000502	1.5139207574379614E-7	proteasome complex
GO:0005838	5.510867188085284E-6	proteasome regulatory particle
GO:0022624	5.510867188085284E-6	proteasome accessory complex
GO:0009056	4.7930498947942075E-5	catabolic process
GO:0006508	1.3891747748080382E-4	proteolysis
GO:0032991	1.544862959393475E-4	macromolecular complex
GO:0044248	2.4709098774416814E-4	cellular catabolic process
GO:0008541	7.298824410228589E-4	proteasome regulatory particle, lid subcomplex
GO:0044257	9.779430297345612E-4	cellular protein catabolic process
GO:0030163	0.0011922000675285821	protein catabolic process
GO:0044428	0.0012378325060481102	nuclear part
GO:0032182	0.0016999575010624391	small conjugating protein binding
GO:0003684	0.0021533473368405636	damaged DNA binding
GO:0001069	0.004672897196261788	regulatory region RNA binding
GO:0006308	0.005126452494874131	DNA catabolic process
GO:0043234	0.00811213028891523	protein complex

Set29a:
CBF1 PHO4 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0090153	0.008264462809916032	regulation of sphingolipid biosynthetic process

Set29b:
RPS4A LSB5 GTR1 PFK27 MNN1 STB3-A GRX1 HMS2 SPL2 PHO86 PHO84 ARO9 STB3 IRC22 
14
GO:0006820	0.0028708133971291775	anion transport
GO:0016740	0.005041765990902359	transferase activity

Set30a:
MSN2 SPT2 RLM1 PHD1 STE12 SWI4 STB1 SWI6 DAL82 NDD1 
10
GO:0048518	3.719210767204403E-8	positive regulation of biological process
GO:0048522	1.0943266176114874E-7	positive regulation of cellular process
GO:0009893	2.2841467205865825E-7	positive regulation of metabolic process
GO:0031325	3.527410231755075E-7	positive regulation of cellular metabolic process
GO:0051173	4.15328252397272E-6	positive regulation of nitrogen compound metabolic process
GO:0010604	5.397314588795437E-6	positive regulation of macromolecule metabolic process
GO:0050789	1.126203810012421E-5	regulation of biological process
GO:0031323	1.4982180793828759E-5	regulation of cellular metabolic process
GO:0045935	1.7048058510849235E-5	positive regulation of nucleobase-containing compound metabolic process
GO:0050794	2.2112732845195536E-5	regulation of cellular process
GO:0019222	2.388473473477796E-5	regulation of metabolic process
GO:0080090	2.7393325676311653E-5	regulation of primary metabolic process
GO:0065007	3.225638310671508E-5	biological regulation
GO:0032774	7.260999285443618E-5	RNA biosynthetic process
GO:0051171	8.813883949782464E-5	regulation of nitrogen compound metabolic process
GO:0009889	1.1192210055436556E-4	regulation of biosynthetic process
GO:0009891	1.6784165113223226E-4	positive regulation of biosynthetic process
GO:0060255	1.7229049089800277E-4	regulation of macromolecule metabolic process
GO:0031326	1.9266206380758657E-4	regulation of cellular biosynthetic process
GO:0031328	2.0353226218910038E-4	positive regulation of cellular biosynthetic process
GO:0005667	3.905502163342205E-4	transcription factor complex
GO:0019219	4.1694304965809125E-4	regulation of nucleobase-containing compound metabolic process
GO:0010628	6.212059296121048E-4	positive regulation of gene expression
GO:0001071	9.043645765923846E-4	nucleic acid binding transcription factor activity
GO:0006351	9.416149694579763E-4	transcription, DNA-dependent
GO:0033309	0.0010319917440660491	SBF transcription complex
GO:0009059	0.0013204001782709037	macromolecule biosynthetic process
GO:0010557	0.0015723393738243704	positive regulation of macromolecule biosynthetic process
GO:0034645	0.0016954797124965285	cellular macromolecule biosynthetic process
GO:0016070	0.0018005591256497503	RNA metabolic process
GO:0010468	0.0021425940047737	regulation of gene expression
GO:0051252	0.003204079889989184	regulation of RNA metabolic process
GO:0010556	0.0037698467058857707	regulation of macromolecule biosynthetic process
GO:0006139	0.004294990157237373	nucleobase-containing compound metabolic process
GO:0051254	0.004304199772639466	positive regulation of RNA metabolic process
GO:0005634	0.004386343639349827	nucleus
GO:0005488	0.005177764632024365	binding
GO:0000988	0.005450008837262928	protein binding transcription factor activity
GO:0000083	0.007121809248582008	regulation of transcription involved in G1/S phase of mitotic cell cycle
GO:0009058	0.00733923909612196	biosynthetic process
GO:0071310	0.007522650583757998	cellular response to organic substance
GO:2000112	0.007718057742026978	regulation of cellular macromolecule biosynthetic process
GO:0044249	0.008813275790916654	cellular biosynthetic process

Set30b:
YDR524W-A YKL096C-B SNA2 AGE1 AGE1-B 
5

Set31a:
SKN7 SWI6 AFT2 NDD1 
4
GO:0048518	0.006217160724096565	positive regulation of biological process
GO:0000988	0.008447845205531702	protein binding transcription factor activity
GO:0048522	0.008831828472544836	positive regulation of cellular process

Set31b:
TSL1 CUE4 SLM4 TSL1-A ECM33 
5
GO:0005946	0.006024096385541824	alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)
GO:0034448	0.006249999999999303	EGO complex

Set32a:
MAC1 GCR2 DIG1 SWI5 YML081W SPT2 RLM1 
7
GO:0050789	3.5055379734817737E-4	regulation of biological process
GO:0031323	4.307304007614707E-4	regulation of cellular metabolic process
GO:0050794	5.624123299697319E-4	regulation of cellular process
GO:0019222	5.954200545511292E-4	regulation of metabolic process
GO:0080090	6.567367848695359E-4	regulation of primary metabolic process
GO:0065007	7.301058499006774E-4	biological regulation
GO:0032774	0.0013061843385543882	RNA biosynthetic process
GO:0051171	0.0014929739897344366	regulation of nitrogen compound metabolic process
GO:0009889	0.0017628397040291878	regulation of biosynthetic process
GO:0060255	0.0023769385322563942	regulation of macromolecule metabolic process
GO:0031326	0.00257560631144518	regulation of cellular biosynthetic process
GO:0019219	0.004417604191566779	regulation of nucleobase-containing compound metabolic process
GO:0006351	0.007810657506841606	transcription, DNA-dependent
GO:0009059	0.009786451754017909	macromolecule biosynthetic process

Set32b:
snR190 snR128 RPA34 
3
GO:0044452	0.0030093521404980367	nucleolar part
GO:0005730	0.004408256404937475	nucleolus
GO:0031974	0.00513874920163652	membrane-enclosed lumen

Set33a:
GLN3 PHO2 
2
GO:0042126	0.007511717145976385	nitrate metabolic process
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0051098	0.008708236010966378	regulation of binding
GO:0051099	0.008875700626444542	positive regulation of binding

Set33b:
DPS1 tT(AGU)H MCH4 SPO73 LAP4 HIS4 HSL1 GPA1-A YHB1 ACA1 BPT1 STP2 RRI2 PHO81 
14
GO:0008180	0.00303951367781151	signalosome

Set34a:
MOT3 ROX1 
2

Set34b:
YPR148C HAP4 SED1 NCE103 NCE102 GAC1 IDH1 PEA2 YER150W KTI12 YAP6 PRB1 
12
GO:0030312	0.00757051921581292	external encapsulating structure
GO:0071704	0.009535160905843247	organic substance metabolic process

Set35a:
ABF1 REB1 
2

Set35b:
BET3 TAF5 RPT5 NAS6 MET5 PHB2 ATP18 SLA2 REG1 CAT8 SUI1 MET1 GPI12 KTR4 RPO31 YML081W RPC19 YNL115C IML1 
19
GO:0009304	0.0027207860103666028	tRNA transcription
GO:0055029	0.002721277405681132	nuclear DNA-directed RNA polymerase complex
GO:0030880	0.004497806587496602	RNA polymerase complex
GO:0005666	0.0053798288825513095	DNA-directed RNA polymerase III complex

Set36a:
HAP4 HAP2 
2
GO:0043467	0.0012535612535609821	regulation of generation of precursor metabolites and energy
GO:0045990	0.0032510713757940256	carbon catabolite regulation of transcription
GO:0000429	0.004136789851075142	carbon catabolite regulation of transcription from RNA polymerase II promoter
GO:0005667	0.005628517823639318	transcription factor complex
GO:0000436	0.00654511453950429	carbon catabolite activation of transcription from RNA polymerase II promoter
GO:0006091	0.0067283352310704946	generation of precursor metabolites and energy
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set36b:
COX9 ATP3 SMF2-A ATP1 COX6 COX7 COX4 INH1 RIP1 IDP1 QCR7 ATP19 ATP17 YEL025C 
14
GO:0006818	6.417606293127919E-12	hydrogen transport
GO:0019866	9.199426359679701E-12	organelle inner membrane
GO:0034654	3.4264475857426454E-10	nucleobase-containing compound biosynthetic process
GO:0044455	6.336230953687791E-10	mitochondrial membrane part
GO:0018130	9.019978564243468E-10	heterocycle biosynthetic process
GO:0005215	1.8498255548758048E-9	transporter activity
GO:0044271	4.324989452332733E-9	cellular nitrogen compound biosynthetic process
GO:0031975	4.342422492312771E-9	envelope
GO:0044429	5.204430971494868E-9	mitochondrial part
GO:0055085	5.7333123658617196E-9	transmembrane transport
GO:0031967	6.255373191815575E-8	organelle envelope
GO:0009142	8.551178279063059E-8	nucleoside triphosphate biosynthetic process
GO:0046483	1.171284396574374E-7	heterocycle metabolic process
GO:0009145	1.4845570980804817E-7	purine nucleoside triphosphate biosynthetic process
GO:0005739	1.5313784695911534E-7	mitochondrion
GO:0009201	1.6324468871312377E-7	ribonucleoside triphosphate biosynthetic process
GO:0009206	1.7966999314318086E-7	purine ribonucleoside triphosphate biosynthetic process
GO:0045277	2.0378687615502894E-7	respiratory chain complex IV
GO:0006811	2.4223394466591923E-7	ion transport
GO:0072522	6.922941200397954E-7	purine-containing compound biosynthetic process
GO:0070469	7.880385165532503E-7	respiratory chain
GO:0072521	8.786297372464111E-7	purine-containing compound metabolic process
GO:0045259	1.2415359550231788E-6	proton-transporting ATP synthase complex
GO:0055086	1.2676163779014776E-6	nucleobase-containing small molecule metabolic process
GO:0009260	3.666019851991525E-6	ribonucleotide biosynthetic process
GO:0009152	3.8866157043570265E-6	purine ribonucleotide biosynthetic process
GO:0015985	4.259814549005653E-6	energy coupled proton transport, down electrochemical gradient
GO:0006164	6.468809898587286E-6	purine nucleotide biosynthetic process
GO:0044281	6.605613507181176E-6	small molecule metabolic process
GO:0006754	8.150222149318216E-6	ATP biosynthetic process
GO:0016469	1.0513088027749987E-5	proton-transporting two-sector ATPase complex
GO:0006091	1.0960499390683232E-5	generation of precursor metabolites and energy
GO:0009165	1.4236779507365549E-5	nucleotide biosynthetic process
GO:0031966	1.6762250182064647E-5	mitochondrial membrane
GO:0006119	2.1020365164005793E-5	oxidative phosphorylation
GO:0031090	2.5055412912406168E-5	organelle membrane
GO:0044425	2.5390675626475636E-5	membrane part
GO:0051234	3.34765423751856E-5	establishment of localization
GO:0022900	4.3045378206467594E-5	electron transport chain
GO:0051179	6.468867093198734E-5	localization
GO:0015077	1.4530659691949912E-4	monovalent inorganic cation transmembrane transporter activity
GO:0016020	1.491330589563294E-4	membrane
GO:0045261	1.606243757786566E-4	proton-transporting ATP synthase complex, catalytic core F(1)
GO:0034220	1.7522892681968603E-4	ion transmembrane transport
GO:0016675	2.3290400413989132E-4	oxidoreductase activity, acting on a heme group of donors
GO:0015002	2.3290400413989132E-4	heme-copper terminal oxidase activity
GO:0055114	4.426849826593344E-4	oxidation-reduction process
GO:0033178	4.885631801020929E-4	proton-transporting two-sector ATPase complex, catalytic domain
GO:0015980	5.355177377021318E-4	energy derivation by oxidation of organic compounds
GO:0045275	8.253968131539019E-4	respiratory chain complex III
GO:0022904	8.624962185333621E-4	respiratory electron transport chain
GO:0016491	8.690747113088509E-4	oxidoreductase activity
GO:0032991	9.108846750807412E-4	macromolecular complex
GO:0015672	0.001025814315540495	monovalent inorganic cation transport
GO:0009295	0.0011849511207661768	nucleoid
GO:0003824	0.0014661210575827933	catalytic activity
GO:0045263	0.0015706051318177476	proton-transporting ATP synthase complex, coupling factor F(o)
GO:0015075	0.0022618702792375905	ion transmembrane transporter activity
GO:0006793	0.0027372900650870914	phosphorus metabolic process
GO:0005746	0.003188497394095558	mitochondrial respiratory chain
GO:0044422	0.0035333427712599856	organelle part
GO:0006807	0.004035022216601788	nitrogen compound metabolic process
GO:0033177	0.004702063293467807	proton-transporting two-sector ATPase complex, proton-transporting domain
GO:0044444	0.005263584636844533	cytoplasmic part
GO:0034641	0.005283898540683677	cellular nitrogen compound metabolic process
GO:0015078	0.005949656750572096	hydrogen ion transmembrane transporter activity

Set37a:
MBP1 SWI6 REB1 
3
GO:0000083	6.138335448029981E-4	regulation of transcription involved in G1/S phase of mitotic cell cycle
GO:0031974	0.00513874920163652	membrane-enclosed lumen
GO:0005667	0.005628517823639318	transcription factor complex
GO:0000082	0.00630252100840354	G1/S transition of mitotic cell cycle

Set37b:
ELO1 RUF1 TIM23 RNR1 ACC1 CDC6 HLR1 
7
GO:0071897	0.005533928707731427	DNA biosynthetic process
GO:0006260	0.005533928707731427	DNA replication
GO:0005971	0.006024096385541824	ribonucleoside-diphosphate reductase complex
GO:0006633	0.007645259938838016	fatty acid biosynthetic process

Set38a:
YAP6 MOT3 GCR2 
3
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0000988	0.004331065137782144	protein binding transcription factor activity
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set38b:
snR55 snR57 SED1 snR40 snR61 CAF40 
6
GO:0043414	3.8053762819811994E-6	macromolecule methylation
GO:0006730	1.0315881469141673E-5	one-carbon metabolic process
GO:0009451	7.671070154687985E-5	RNA modification
GO:0000496	1.2287106069431357E-4	base pairing
GO:0030529	1.494931996114889E-4	ribonucleoprotein complex
GO:0031974	7.716980792315753E-4	membrane-enclosed lumen
GO:0032991	9.28790464896329E-4	macromolecular complex
GO:0044428	9.300580311158607E-4	nuclear part
GO:0044452	0.001817875640765801	nucleolar part
GO:0005732	0.00238133790167526	small nucleolar ribonucleoprotein complex
GO:0000154	0.0024469162581004416	rRNA modification
GO:0019843	0.003967554223241011	rRNA binding
GO:0070013	0.006501455973903447	intracellular organelle lumen
GO:0043233	0.006501455973903447	organelle lumen
GO:0000498	0.006968168491709258	base pairing with RNA
GO:0005730	0.008037836723568132	nucleolus
GO:0030015	0.008097165991902366	CCR4-NOT core complex
GO:0006396	0.008396438667839432	RNA processing
GO:0000944	0.00916138125440458	base pairing with rRNA
GO:0043228	0.009829488828070177	non-membrane-bounded organelle
GO:0043232	0.009829488828070177	intracellular non-membrane-bounded organelle

Set39a:
NRG1 PHO2 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0051098	0.008708236010966378	regulation of binding
GO:0051099	0.008875700626444542	positive regulation of binding

Set39b:
ERG4 FMP48 SED1 GTR1 IDH2 MNN1 DGK1 YEF3 YKL096C-B PHO84 IRC22 HMG1 PDR1 
13
GO:2001038	0.0057803468208086255	regulation of cellular response to drug
GO:0016020	0.006968927171206933	membrane
GO:2001040	0.0073529411764705266	positive regulation of cellular response to drug
GO:0048584	0.008982035928142914	positive regulation of response to stimulus
GO:0035690	0.009345794392523593	cellular response to drug
GO:0044425	0.009851991017881935	membrane part

Set40a:
ABF1 PHO2 
2
GO:0051098	0.008708236010966378	regulation of binding
GO:0051099	0.008875700626444542	positive regulation of binding

Set40b:
GPR1 TAF4 TID3 FBA1 IDH1 NOB1 PAM16 GZF3 NCE103 SGT1 GCN2 PAN6 
12
GO:0051606	2.733360666940041E-4	detection of stimulus
GO:0009593	3.633720930232545E-4	detection of chemical stimulus
GO:0044283	0.006284691640850991	small molecule biosynthetic process

Set41a:
REB1 SUM1 
2

Set41b:
FZO1 MAM1 KAP104 GYP6 YKR015C SRL2 NUP157 FCJ1 DTR1 YJL043W 
10
GO:0032592	0.00489795918367349	integral to mitochondrial membrane

Set42a:
MBP1 PHO2 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0051098	0.008708236010966378	regulation of binding
GO:0051099	0.008875700626444542	positive regulation of binding

Set42b:
ERP3 TOS3 MPT5 LAP4 THI22 HSL1 YPR120C HST2 YPL014W ATG19 tC(GCA)P2 SEN1 GIN4 CDC7 
14
GO:0031935	2.1131963942661445E-4	regulation of chromatin silencing
GO:0019538	3.807861493103345E-4	protein metabolic process
GO:0051302	6.205046477232511E-4	regulation of cell division
GO:0060968	7.821044791883481E-4	regulation of gene silencing
GO:0040029	0.001924778761061952	regulation of gene expression, epigenetic
GO:0006793	0.0027372900650870914	phosphorus metabolic process
GO:0051726	0.003436846441920797	regulation of cell cycle
GO:0071775	0.004354136429608109	regulation of cell cycle cytokinesis
GO:0032465	0.004761904761904784	regulation of cytokinesis
GO:0044267	0.005212117652045384	cellular protein metabolic process
GO:0016458	0.005663066675632961	gene silencing
GO:0034045	0.007739938080497584	pre-autophagosomal structure membrane
GO:0046777	0.00784313725490184	protein autophosphorylation

Set43a:
GLN3 DAL82 HAP2 
3
GO:0019740	2.568376607803346E-4	nitrogen utilization
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0007154	0.0011213935764833173	cell communication
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0006808	0.0019914960404520234	regulation of nitrogen utilization
GO:0009719	0.0022618813548728046	response to endogenous stimulus
GO:0009605	0.002368573871612081	response to external stimulus
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0007584	0.0024928385559030257	response to nutrient
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0090293	0.004015429849727145	nitrogen catabolite regulation of transcription
GO:0001079	0.004172571248622252	nitrogen catabolite regulation of transcription from RNA polymerase II promoter
GO:0031668	0.00476068553871796	cellular response to extracellular stimulus
GO:0090294	0.005189309015794733	nitrogen catabolite activation of transcription
GO:0031670	0.005282179594106165	cellular response to nutrient
GO:0051716	0.008384515738521489	cellular response to stimulus
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set43b:
GLT1 DCG1 UGA3 ASN1 NOC4 DAL2 
6
GO:0030692	0.003490401396160753	Noc4p-Nop14p complex
GO:0030689	0.00607902735562302	Noc complex

Set44a:
NRG1 HAP1 SKO1 NDD1 
4
GO:0000988	2.0017516225474654E-6	protein binding transcription factor activity
GO:0001071	0.0025913081073285975	nucleic acid binding transcription factor activity
GO:0005515	0.005314620789852395	protein binding
GO:0048518	0.006217160724096565	positive regulation of biological process
GO:0001191	0.006734006734006697	RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription
GO:0008134	0.007151014361113119	transcription factor binding
GO:0048522	0.008831828472544836	positive regulation of cellular process

Set44b:
COT1-A YKL096C-B FAA1 COT1 
4
GO:0035383	0.0012515644555694885	thioester metabolic process

Set45a:
CBF1 SKN7 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0090153	0.008264462809916032	regulation of sphingolipid biosynthetic process

Set45b:
snR47 GSH1 RPI1 YDR042C MET4 OLE1 RHO3 MNN1 LSB6 SDS23 PHO91 MET28 LEU4 NCA3 IRC22 YNR014W FMP48 YAP5 YJL115W 
19
GO:0044272	2.951911398524341E-4	sulfur compound biosynthetic process
GO:0006790	0.001093405765876675	sulfur compound metabolic process
GO:0016053	0.0018974150793997513	organic acid biosynthetic process
GO:0010035	0.002772500457791604	response to inorganic substance
GO:0044283	0.0028155312825402625	small molecule biosynthetic process
GO:0010638	0.009504674282795245	positive regulation of organelle organization

Set46a:
UME6 SUT1 
2
GO:0034389	0.004184100418409662	lipid particle organization
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set46b:
YGR067C GAC1 ACS1 YOR152C FLC2 YIG1 YKR009C CSM4 PDR5 tL(CAA)K 
10
GO:0046677	0.007751937984496201	response to antibiotic
GO:0042908	0.008163265306122875	xenobiotic transport
GO:0034397	0.009803921568626871	telomere localization

Set47a:
MET32 MET31 
2
GO:0042762	6.733855581244427E-5	regulation of sulfur metabolic process
GO:0033238	2.5131942699168117E-4	regulation of cellular amine metabolic process
GO:0006521	2.5875452820422036E-4	regulation of cellular amino acid metabolic process
GO:0010565	8.189276514643707E-4	regulation of cellular ketone metabolic process
GO:0006790	0.001273521726720097	sulfur compound metabolic process
GO:0000988	0.0014804034334107972	protein binding transcription factor activity
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0001010	0.008566533409480154	sequence-specific DNA binding transcription factor recruiting transcription factor activity

Set47b:
MET2 MET2-A MET16 MET5 IES5 NUT2 USO1 CYS3 MET14 MET6 SAM1 YLR179C RAD59 IML1 
14
GO:0044272	8.219191750984406E-10	sulfur compound biosynthetic process
GO:0006790	1.3314126474464733E-9	sulfur compound metabolic process
GO:0016053	2.007174286010666E-6	organic acid biosynthetic process
GO:0006520	4.98400731239444E-6	cellular amino acid metabolic process
GO:0000096	9.57747639671875E-6	sulfur amino acid metabolic process
GO:0044283	1.2141154502284926E-5	small molecule biosynthetic process
GO:0006082	2.675268896791837E-5	organic acid metabolic process
GO:0044271	3.3771432380716415E-5	cellular nitrogen compound biosynthetic process
GO:0042180	3.401284275036045E-5	cellular ketone metabolic process
GO:0044106	9.019765450466848E-5	cellular amine metabolic process
GO:0009308	2.048092829796542E-4	amine metabolic process
GO:0009066	6.78076268014006E-4	aspartate family amino acid metabolic process
GO:0009309	7.016599046098578E-4	amine biosynthetic process
GO:0000097	0.001042897780346973	sulfur amino acid biosynthetic process
GO:0009069	0.002069663920698227	serine family amino acid metabolic process
GO:0009070	0.008795826717434263	serine family amino acid biosynthetic process
GO:0008652	0.008986651207434023	cellular amino acid biosynthetic process

Set48a:
SKN7 XBP1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set48b:
YKL063C YNL234W MSN4 TCB2 SUR7 YML053C GIC2 MGA1 NDE1 SCW10 FKS3 
11
GO:0032502	3.1185929004833837E-4	developmental process
GO:0022604	0.0035014366271389637	regulation of cell morphogenesis
GO:0048869	0.0037662855172930047	cellular developmental process
GO:0008360	0.003830439223697516	regulation of cell shape
GO:0007569	0.00676437377084625	cell aging
GO:0000148	0.007692307692307168	1,3-beta-D-glucan synthase complex

Set49a:
RAP1 MSN4 FKH2 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0016458	0.0025536140506196873	gene silencing

Set49b:
RPS1B IRC15 SWI1 ECM19-A TEM1 
5

Set50a:
YAP7 UME6 
2
GO:0034389	0.004184100418409662	lipid particle organization
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set50b:
PST1 ECM38 YLR297W YHC1 CDC34 UBC5 ATP14 MAK21 
8
GO:0006805	0.006257822277842747	xenobiotic metabolic process
GO:0030690	0.006968641114981779	Noc1p-Noc2p complex

Set51a:
GCN4 LEU3 
2
GO:2000282	0.007246376811594155	regulation of cellular amino acid biosynthetic process
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set51b:
MET4 ILV5 ATG33 ILV3 LEU4 BAP2 LEU1 AQR1 
8
GO:0006520	1.5240729308457348E-5	cellular amino acid metabolic process
GO:0016053	2.2296232004167117E-5	organic acid biosynthetic process
GO:0044271	6.222362406620232E-5	cellular nitrogen compound biosynthetic process
GO:0044283	8.044725873014713E-5	small molecule biosynthetic process
GO:0044106	1.297441050635478E-4	cellular amine metabolic process
GO:0009308	2.3900731787563083E-4	amine metabolic process
GO:0006082	2.7694964957330207E-4	organic acid metabolic process
GO:0042180	3.2902500662002624E-4	cellular ketone metabolic process
GO:0009082	4.8896719262978E-4	branched chain family amino acid biosynthetic process
GO:0009081	7.239356047621722E-4	branched chain family amino acid metabolic process
GO:0051540	0.0023782568521108654	metal cluster binding
GO:0009316	0.0032894736842101926	3-isopropylmalate dehydratase complex
GO:0009309	0.0059659753059514275	amine biosynthetic process

Set52a:
PHD1 HAP1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set52b:
YER048C ERG5 CWP2 UTR4 CYC7 ERG11 tQ(UUG)E1 YKL096C-B ERG11-A 
9
GO:0046906	8.551994573124628E-5	tetrapyrrole binding
GO:0009055	1.0179224263364538E-4	electron carrier activity
GO:0004497	0.0016415868673050876	monooxygenase activity
GO:0044107	0.003528147365139056	cellular alcohol metabolic process
GO:0005506	0.005483549351944273	iron ion binding
GO:0044108	0.005819889507433426	cellular alcohol biosynthetic process
GO:0032451	0.006521739130433288	demethylase activity
GO:0016705	0.009849521203830537	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Set53a:
MSN2 YAP6 SKN7 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity

Set53b:
YPR148C ICS2 NCE102 MDH2 MGA1 AMN1 TRM13 YBR085C-A 
8

Set54a:
SWI4 STB1 SWI6 FKH2 
4
GO:0005667	2.5609850251418857E-5	transcription factor complex
GO:0048518	2.0104118072084663E-4	positive regulation of biological process
GO:0000988	2.1428507003319077E-4	protein binding transcription factor activity
GO:0048522	3.2655912895425713E-4	positive regulation of cellular process
GO:0009893	4.5765085988733206E-4	positive regulation of metabolic process
GO:0031325	5.56609914430763E-4	positive regulation of cellular metabolic process
GO:0000083	6.138335448029981E-4	regulation of transcription involved in G1/S phase of mitotic cell cycle
GO:0031974	8.792363438971205E-4	membrane-enclosed lumen
GO:0051173	0.0017103808914118003	positive regulation of nitrogen compound metabolic process
GO:0010604	0.0019142550561718134	positive regulation of macromolecule metabolic process
GO:0045935	0.003247105670396677	positive regulation of nucleobase-containing compound metabolic process
GO:0044428	0.0037885414713808895	nuclear part
GO:0033309	0.004127966976264183	SBF transcription complex
GO:0022402	0.006129717506961671	cell cycle process
GO:0044427	0.007815808879834709	chromosomal part
GO:0044451	0.008491731087552695	nucleoplasm part
GO:0032991	0.009594114428454424	macromolecular complex

Set54b:
GIC1 SRL1 YOR246C NUD1 NDD1 
5
GO:0009986	0.004612546125456227	cell surface
GO:0044430	0.008793881703582153	cytoskeletal part

Set55a:
YOX1 MCM1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set55b:
MCM5 UTH1 HST4 PIG1 DBF2 RVB1 MCM3 KIN3 
8
GO:0016458	4.223638947522158E-5	gene silencing
GO:0040029	0.0010209810985636074	regulation of gene expression, epigenetic
GO:0036094	0.001100986747161587	small molecule binding
GO:0004386	0.0012309390946256416	helicase activity
GO:0031298	0.0017411156144113368	replication fork protection complex
GO:0051172	0.0017721950748313953	negative regulation of nitrogen compound metabolic process
GO:0000808	0.0025399192230157893	origin recognition complex
GO:0045934	0.0033144116082175043	negative regulation of nucleobase-containing compound metabolic process
GO:0065007	0.004031171623208747	biological regulation
GO:0009889	0.004395450539561947	regulation of biosynthetic process
GO:0003688	0.004691898654988847	DNA replication origin binding
GO:0000811	0.004799543853272302	GINS complex
GO:0071162	0.004799543853272302	CMG complex
GO:0048519	0.005660742258387816	negative regulation of biological process
GO:0031261	0.005844535359438963	DNA replication preinitiation complex
GO:0051320	0.005891016200294405	S phase
GO:0010629	0.006050161872171892	negative regulation of gene expression
GO:0031326	0.0060816078543365	regulation of cellular biosynthetic process
GO:0009890	0.006545998812506818	negative regulation of biosynthetic process
GO:0003682	0.006670250913446025	chromatin binding
GO:0009892	0.007148109948351064	negative regulation of metabolic process
GO:0031327	0.007349433326672847	negative regulation of cellular biosynthetic process
GO:0031324	0.007535436357515149	negative regulation of cellular metabolic process
GO:0048523	0.007748619429143219	negative regulation of cellular process
GO:0032993	0.00830018522813935	protein-DNA complex
GO:0005656	0.008766803039158454	pre-replicative complex
GO:0003824	0.009278048887047531	catalytic activity

Set56a:
GCN4 BAS1 
2
GO:2000144	0.008130081300812846	positive regulation of transcription initiation, DNA-dependent

Set56b:
MRPS17 GCV3 MET6 ADE3 STR3 IES5 TPN1 SHM2 HIS4 GCV2 
10
GO:0006520	1.2172098539978974E-6	cellular amino acid metabolic process
GO:0044106	3.380281516477647E-6	cellular amine metabolic process
GO:0006730	3.836639190647936E-6	one-carbon metabolic process
GO:0006082	6.731586030592286E-6	organic acid metabolic process
GO:0009308	8.028932489872389E-6	amine metabolic process
GO:0042180	8.601240413029765E-6	cellular ketone metabolic process
GO:0005960	8.161036100769426E-5	glycine cleavage complex
GO:0048037	5.877297662392433E-4	cofactor binding
GO:0044272	6.773946148625498E-4	sulfur compound biosynthetic process
GO:0006547	0.0012406947890817837	histidine metabolic process
GO:0019842	0.0015854683253104399	vitamin binding
GO:0006790	0.0021346037275493212	sulfur compound metabolic process
GO:0051180	0.004081632653061661	vitamin transport
GO:0044281	0.005340585198701559	small molecule metabolic process
GO:0016810	0.005712133576046458	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0016741	0.008152173913043168	transferase activity, transferring one-carbon groups
GO:0016053	0.009346369191201019	organic acid biosynthetic process
GO:0016638	0.009538250716369838	oxidoreductase activity, acting on the CH-NH2 group of donors

Set57a:
ARG81 ARG80 GCN4 
3
GO:0006520	0.0013294098984061088	cellular amino acid metabolic process
GO:0006082	0.002754100520386723	organic acid metabolic process
GO:0042180	0.0030598633630377486	cellular ketone metabolic process
GO:0000988	0.004331065137782144	protein binding transcription factor activity
GO:0044106	0.004788670758258734	cellular amine metabolic process
GO:0009308	0.006880809314624022	amine metabolic process

Set57b:
TAF13 ARG81 ARG3 ARG8 ARG5,6 
5
GO:0006591	3.908540160250286E-5	ornithine metabolic process
GO:0006520	6.546079100534973E-4	cellular amino acid metabolic process
GO:0006082	0.0016923679672936351	organic acid metabolic process
GO:0042180	0.0019398317902338115	cellular ketone metabolic process
GO:0006592	0.002262443438914034	ornithine biosynthetic process
GO:0009064	0.0028183870914575944	glutamine family amino acid metabolic process
GO:0044106	0.003441236088952942	cellular amine metabolic process
GO:0009308	0.005482535210045088	amine metabolic process
GO:0009348	0.006024096385541824	ornithine carbamoyltransferase complex
GO:0045920	0.008130081300812846	negative regulation of exocytosis
GO:0051051	0.00867052023121341	negative regulation of transport

Set58a:
PHD1 NDD1 FKH2 
3
GO:0000117	3.077740818216149E-4	regulation of transcription involved in G2/M-phase of mitotic cell cycle
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0090282	0.002134097786271703	positive regulation of transcription involved in G2/M-phase of mitotic cell cycle
GO:0016049	0.0022220175034543205	cell growth
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0000988	0.004331065137782144	protein binding transcription factor activity
GO:0040007	0.004529765547119604	growth
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set58b:
ICS2 OCA5 WSC4 AMN1 YHP1 PPN1 
6

Set59a:
NRG1 UME6 
2
GO:0016049	7.537372806834754E-4	cell growth
GO:0000988	0.0014804034334107972	protein binding transcription factor activity
GO:0040007	0.0015492594070577977	growth
GO:0034389	0.004184100418409662	lipid particle organization
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0051039	0.0095238095238093	positive regulation of transcription during meiosis

Set59b:
IME2 MES1 SMT3 YOR338W YJL107C GNP1 YGR266W 
7
GO:0017102	0.006024096385541824	methionyl glutamyl tRNA synthetase complex

Set60a:
PHO2 SUM1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0051098	0.008708236010966378	regulation of binding
GO:0051099	0.008875700626444542	positive regulation of binding

Set60b:
SAS5 YDR042C YAR1 ORC3 SPO75 HSP82 PHM6 
7
GO:0032846	0.0053475935828875614	positive regulation of homeostatic process
GO:0032844	0.007556675062972608	regulation of homeostatic process
GO:0016458	0.008197996681060159	gene silencing
GO:0071841	0.009163887707795353	cellular component organization or biogenesis at cellular level

Set61a:
PHO2 REB1 
2
GO:0051098	0.008708236010966378	regulation of binding
GO:0051099	0.008875700626444542	positive regulation of binding

Set61b:
GCS1 PRP22 SPT20 SHS1 TCO89 ISD11 YPT6 
7
GO:0023052	4.3335100433717445E-4	signaling
GO:0007165	9.463544167913375E-4	signal transduction
GO:0019898	0.0023887523887520046	extrinsic to membrane
GO:0007154	0.003113091248817627	cell communication
GO:0031312	0.00410386421874537	extrinsic to organelle membrane
GO:0005793	0.007918552036202326	endoplasmic reticulum-Golgi intermediate compartment
GO:0000386	0.008547008547007923	second spliceosomal transesterification activity
GO:0044093	0.009946477562802215	positive regulation of molecular function

Set62a:
GCR1 GCR2 
2
GO:0072361	9.192866335722522E-5	regulation of glycolysis by regulation of transcription from RNA polymerase II promoter
GO:0072363	2.3889154323936682E-4	regulation of glycolysis by positive regulation of transcription from RNA polymerase II promoter
GO:0043471	3.5795251163344343E-4	regulation of cellular carbohydrate catabolic process
GO:0060963	7.166746297181001E-4	positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter
GO:0060962	9.447331128955547E-4	regulation of ribosomal protein gene transcription from RNA polymerase II promoter
GO:0010675	0.0010318755745669101	regulation of cellular carbohydrate metabolic process
GO:0043467	0.0012535612535609821	regulation of generation of precursor metabolites and energy
GO:0006109	0.0014110496038207362	regulation of carbohydrate metabolic process
GO:0005635	0.004038228563736585	nuclear envelope
GO:0031329	0.004379054680260413	regulation of cellular catabolic process
GO:0009894	0.004749599092979486	regulation of catabolic process
GO:0006091	0.0067283352310704946	generation of precursor metabolites and energy
GO:0012505	0.006976316300557754	endomembrane system
GO:0031975	0.007768498737617779	envelope
GO:0044262	0.007859271080281276	cellular carbohydrate metabolic process
GO:0043470	0.008474576271186491	regulation of carbohydrate catabolic process

Set62b:
PDC1 CDC19 CYC3 GPM1 BMH1 SBP1 TDH3 
7
GO:0006091	6.135619727267807E-5	generation of precursor metabolites and energy
GO:0044262	9.029179849599607E-5	cellular carbohydrate metabolic process
GO:0044282	1.383704193415177E-4	small molecule catabolic process
GO:0005975	2.160201567817304E-4	carbohydrate metabolic process
GO:0016052	4.93861148745834E-4	carbohydrate catabolic process
GO:0051248	0.001734731362239017	negative regulation of protein metabolic process
GO:0032269	0.0018267161780595167	negative regulation of cellular protein metabolic process
GO:0006066	0.002049519425399884	alcohol metabolic process
GO:0034637	0.002220441584224353	cellular carbohydrate biosynthetic process
GO:0016051	0.002787689145332132	carbohydrate biosynthetic process
GO:0000267	0.004816569300821541	cell fraction
GO:0051219	0.005494505494505476	phosphoprotein binding
GO:0042430	0.005725190839695783	indole-containing compound metabolic process
GO:0046164	0.0065560992194355575	alcohol catabolic process
GO:0051439	0.008196721311475488	regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0000287	0.008714521906862517	magnesium ion binding
GO:0006090	0.009230769230769244	pyruvate metabolic process
GO:0019439	0.009433962264150551	aromatic compound catabolic process

Set63a:
YAP6 SPT23 PHO2 
3
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set63b:
GPI14 RPS14B SOP4 YJR011C 
4

Set64a:
YAP7 GCN4 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set64b:
URA2 GLT1 ARG1 UGA3 LAP4 HSL1 TRP2 BAP2 PTC2 YHI9 
10
GO:0044106	1.297441050635478E-4	cellular amine metabolic process
GO:0009308	2.3900731787563083E-4	amine metabolic process
GO:0006520	6.481983884960378E-4	cellular amino acid metabolic process
GO:0044271	0.0019490044828478232	cellular nitrogen compound biosynthetic process
GO:0006082	0.0020347882312349097	organic acid metabolic process
GO:0042180	0.0023948390027555668	cellular ketone metabolic process
GO:0034976	0.003921568627451086	response to endoplasmic reticulum stress
GO:0006142	0.00881057268722452	regulation of pyrimidine base metabolic process

Set65a:
PHD1 UME6 
2
GO:0016049	7.537372806834754E-4	cell growth
GO:0040007	0.0015492594070577977	growth
GO:0034389	0.004184100418409662	lipid particle organization
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set65b:
RIM4 YMR018W IRC15 STP4 GAC1 ARO9 ROX1 ACH1 MSC6 YPR063C SPL2 GDS1 SIT4 SCW10 SWI1 FKS3 
16
GO:0000003	0.002630254432852438	reproduction
GO:0048610	0.0054608825754151125	cellular process involved in reproduction
GO:0022414	0.006174265973264165	reproductive process
GO:0033692	0.008778885484249798	cellular polysaccharide biosynthetic process

Set66a:
HAP4 HAP1 
2
GO:0043467	0.0012535612535609821	regulation of generation of precursor metabolites and energy
GO:0000988	0.0014804034334107972	protein binding transcription factor activity
GO:0045990	0.0032510713757940256	carbon catabolite regulation of transcription
GO:0000429	0.004136789851075142	carbon catabolite regulation of transcription from RNA polymerase II promoter
GO:0000436	0.00654511453950429	carbon catabolite activation of transcription from RNA polymerase II promoter
GO:0006091	0.0067283352310704946	generation of precursor metabolites and energy
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set66b:
COX8 SMF2-A COX6 YNG1 COX4 COX7 YBL044W COR1 CYT1 COX13 
10
GO:0045277	3.063166228664691E-11	respiratory chain complex IV
GO:0070469	4.556032909020844E-11	respiratory chain
GO:0019866	3.7586489171562624E-9	organelle inner membrane
GO:0006818	2.5425593492429117E-8	hydrogen transport
GO:0044455	3.037518346055029E-8	mitochondrial membrane part
GO:0006091	1.4497237820480627E-7	generation of precursor metabolites and energy
GO:0031975	2.5846207384344497E-7	envelope
GO:0055085	8.272217145801056E-7	transmembrane transport
GO:0016675	1.0230666933753105E-6	oxidoreductase activity, acting on a heme group of donors
GO:0015002	1.0230666933753105E-6	heme-copper terminal oxidase activity
GO:0031967	1.7148470976256642E-6	organelle envelope
GO:0005746	2.4666523550998437E-6	mitochondrial respiratory chain
GO:0055114	7.405701535774297E-6	oxidation-reduction process
GO:0044429	9.498680133412607E-6	mitochondrial part
GO:0005215	1.704139562374574E-5	transporter activity
GO:0034654	1.8566305605853125E-5	nucleobase-containing compound biosynthetic process
GO:0006119	2.3178838522836792E-5	oxidative phosphorylation
GO:0006811	2.7419844390704984E-5	ion transport
GO:0018130	2.8212977751240595E-5	heterocycle biosynthetic process
GO:0022900	4.3045378206467594E-5	electron transport chain
GO:0031966	1.1531098505460854E-4	mitochondrial membrane
GO:0031090	1.2092093501108817E-4	organelle membrane
GO:0072522	1.672377835532635E-4	purine-containing compound biosynthetic process
GO:0009142	1.7158366523507446E-4	nucleoside triphosphate biosynthetic process
GO:0005739	1.8678459416354105E-4	mitochondrion
GO:0009145	2.2540776966561933E-4	purine nucleoside triphosphate biosynthetic process
GO:0009201	2.3624468166876656E-4	ribonucleoside triphosphate biosynthetic process
GO:0009206	2.4771287009928394E-4	purine ribonucleoside triphosphate biosynthetic process
GO:0045275	2.981823126824689E-4	respiratory chain complex III
GO:0044271	3.2970932508243685E-4	cellular nitrogen compound biosynthetic process
GO:0015980	5.355177377021318E-4	energy derivation by oxidation of organic compounds
GO:0051234	5.420302212140323E-4	establishment of localization
GO:0032991	5.823539810199523E-4	macromolecular complex
GO:0005751	5.870720553701648E-4	mitochondrial respiratory chain complex IV
GO:0016491	5.992703220019945E-4	oxidoreductase activity
GO:0044425	6.729647804555948E-4	membrane part
GO:0051179	8.600368343536724E-4	localization
GO:0009260	9.285221310089383E-4	ribonucleotide biosynthetic process
GO:0009152	9.702877949340524E-4	purine ribonucleotide biosynthetic process
GO:0006164	0.0012018879194513883	purine nucleotide biosynthetic process
GO:0006754	0.0016813167364757185	ATP biosynthetic process
GO:0009165	0.0016866180119036733	nucleotide biosynthetic process
GO:0006793	0.0018034901829204993	phosphorus metabolic process
GO:0016020	0.0021047447856489417	membrane
GO:0043167	0.002230476898477306	ion binding
GO:0034220	0.002699426039807481	ion transmembrane transport
GO:0072521	0.003383525917609975	purine-containing compound metabolic process
GO:0055086	0.003933577006469297	nucleobase-containing small molecule metabolic process
GO:0044446	0.0044626863207740085	intracellular organelle part
GO:0004129	0.005413703943115691	cytochrome-c oxidase activity
GO:0044422	0.008120927113421071	organelle part
GO:0046483	0.009009222450684837	heterocycle metabolic process

Set67a:
CIN5 ROX1 SKO1 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0000988	0.004331065137782144	protein binding transcription factor activity

Set67b:
GAC1 PMC1 RHO5 YPR013C RPS3 PMA1 PMC1-A YGL007C-A 
8

Set68a:
MSN2 PHO2 MOT3 
3
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0071214	0.0027648611285658476	cellular response to abiotic stimulus
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0071470	0.005366726296958866	cellular response to osmotic stress
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set68b:
PRB1 ISU1 GIP3 CUP9 
4
GO:0051051	0.00867052023121341	negative regulation of transport

Set69a:
MBP1 ABF1 
2

Set69b:
PHO2 RFA2 EMW1 LSM4 RLF2 RBA50 ECM33 SLM4 SWI4 NSE4 DSS4 
11
GO:0044427	0.0033031448786786373	chromosomal part
GO:0017069	0.009345794392523593	snRNA binding

Set70a:
YAP6 XBP1 ROX1 DIG1 SOK2 
5
GO:0001071	2.803016809767777E-4	nucleic acid binding transcription factor activity
GO:0050789	0.0034359642741450124	regulation of biological process
GO:0031323	0.0039920825848957795	regulation of cellular metabolic process
GO:0050794	0.004816993208620784	regulation of cellular process
GO:0019222	0.005024513196411015	regulation of metabolic process
GO:0080090	0.0053941290632051634	regulation of primary metabolic process
GO:0065007	0.005794872088728441	biological regulation
GO:0016049	0.007152738541015031	cell growth
GO:0032774	0.008836303150255957	RNA biosynthetic process
GO:0048519	0.009470508493640681	negative regulation of biological process
GO:0051171	0.009712382968487908	regulation of nitrogen compound metabolic process

Set70b:
PHD1 CBF2 TPO2 
3
GO:0031518	0.003787878787878903	CBF3 complex

Set71a:
ROX1 RDS1 RTG3 MSN4 
4
GO:0001071	6.020583084831739E-5	nucleic acid binding transcription factor activity
GO:0050896	0.003240977672130409	response to stimulus

Set71b:
YPR063C ZWF1 ROX1 
3

Set72a:
CIN5 FKH2 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set72b:
PST2 RPI1 RHO3 YBR053C MRH1 YRO2 
6
GO:0000267	0.0014911961315974913	cell fraction
GO:0005933	0.002066541564430625	cellular bud
GO:0022838	0.002347417840375607	substrate-specific channel activity
GO:0022803	0.0030864197530864647	passive transmembrane transporter activity
GO:0005216	0.006342494714587714	ion channel activity
GO:0045921	0.006896551724137712	positive regulation of exocytosis

Set73a:
HSF1 PHO2 
2
GO:0030474	0.004608294930875325	spindle pole body duplication
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0051098	0.008708236010966378	regulation of binding
GO:0051099	0.008875700626444542	positive regulation of binding

Set73b:
SSE2 SSA4 LST8 HSP26 HSP78 SIS1 
6
GO:0006457	1.429699659679405E-5	protein folding
GO:0005515	3.7806778794982046E-4	protein binding
GO:0019538	0.0027625952741341907	protein metabolic process
GO:0050896	0.0037000260635312913	response to stimulus
GO:0044270	0.004677698365550104	cellular nitrogen compound catabolic process
GO:0071806	0.005695509309967434	protein transmembrane transport
GO:0031932	0.006066734074823054	TORC2 complex
GO:0034655	0.006943971610563111	nucleobase-containing compound catabolic process

Set74a:
ABF1 HAP1 
2

Set74b:
SPT23 PET10 FAS1 RTN1 RAM2 LYS4 
6
GO:0031300	0.0013531872105091774	intrinsic to organelle membrane
GO:0016053	0.001688677624048823	organic acid biosynthetic process
GO:0044283	0.0035889305541938173	small molecule biosynthetic process
GO:0005811	0.005266490172860567	lipid particle
GO:0005953	0.006066734074823054	CAAX-protein geranylgeranyltransferase complex
GO:0016829	0.006969774809486776	lyase activity
GO:0031301	0.008190618019358784	integral to organelle membrane

Set75a:
SFP1 YAP5 
2
GO:0034395	0.006849315068493371	regulation of transcription from RNA polymerase II promoter in response to iron
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set75b:
RPL23B snR17a SLX8 RPS18B RPS6A RPL33B 
6
GO:0030529	1.494931996114889E-4	ribonucleoprotein complex
GO:0044445	3.452012866152496E-4	cytosolic part
GO:0005198	3.4524851019617474E-4	structural molecule activity
GO:0043228	6.279662873265523E-4	non-membrane-bounded organelle
GO:0043232	6.279662873265523E-4	intracellular non-membrane-bounded organelle
GO:0032991	9.28790464896329E-4	macromolecular complex
GO:0044391	0.0020110736347657837	ribosomal subunit
GO:0005840	0.0022012373240585764	ribosome
GO:0005829	0.003778687810017465	cytosol
GO:0044422	0.007610320101702211	organelle part
GO:0090305	0.008979551287822915	nucleic acid phosphodiester bond hydrolysis

Set76a:
HAP1 SOK2 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set76b:
FET3 YOL114C ERG25 SKM1 AAC1 ERG28 
6
GO:0044107	0.002373898582796979	cellular alcohol metabolic process
GO:0016020	0.003541506523905584	membrane
GO:0044108	0.0035433500349547277	cellular alcohol biosynthetic process
GO:0033573	0.007692307692307591	high affinity iron permease complex

Set77a:
DIG1 OPI1 GZF3 YAP7 YHL009C PDR1 
6
GO:0001071	7.831405570476672E-4	nucleic acid binding transcription factor activity
GO:0050789	0.0010985320947536645	regulation of biological process
GO:0031323	0.0013129300734310142	regulation of cellular metabolic process
GO:0050794	0.0016475372960281444	regulation of cellular process
GO:0019222	0.0017315787300720689	regulation of metabolic process
GO:0080090	0.001884442490912388	regulation of primary metabolic process
GO:0065007	0.002058569125659108	biological regulation
GO:0032774	0.0034022992056635627	RNA biosynthetic process
GO:0051171	0.0038131362710791396	regulation of nitrogen compound metabolic process
GO:0009889	0.004395450539561947	regulation of biosynthetic process
GO:0060255	0.005673982302805024	regulation of macromolecule metabolic process
GO:0031326	0.0060816078543365	regulation of cellular biosynthetic process
GO:0003676	0.0065182371316626075	nucleic acid binding
GO:0019219	0.00965476391188814	regulation of nucleobase-containing compound metabolic process

Set77b:
BSP1 tI(AAU)P2 
2
GO:0060090	0.0013385984873841498	binding, bridging

Set78a:
ABF1 DAL82 
2

Set78b:
HRB1 ANT1 SCD6 YPL179W RBA50 MRP7 
6
GO:0030530	0.0077519379844957605	heterogeneous nuclear ribonucleoprotein complex

Set79a:
SKN7 HAP1 
2
GO:0043620	0.005193385267185533	regulation of DNA-dependent transcription in response to stress
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set79b:
HMX1 PUT4 OLE1 CCW12 SDS23 TSA1 ENT2 NDE1 YLR113W CIN1 
10
GO:0016705	0.0031051703393602972	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016491	0.004258977183782731	oxidoreductase activity
GO:0055114	0.004751698132582178	oxidation-reduction process
GO:0046149	0.008771929824560584	pigment catabolic process
GO:0033015	0.009708737864077497	tetrapyrrole catabolic process

Set80a:
REB1 MCM1 NDD1 
3

Set80b:
MIC17 tK(UUU)P CLB2 CDC5-A RUF1 CDC5 HLR1 
7
GO:0032886	7.121379965184843E-4	regulation of microtubule-based process
GO:0090068	0.0011012782694198575	positive regulation of cell cycle process
GO:0031023	0.0019338279244747582	microtubule organizing center organization
GO:0000073	0.003921568627451086	spindle pole body separation
GO:0033043	0.004078840030525947	regulation of organelle organization
GO:0007017	0.00571138739450689	microtubule-based process
GO:0005819	0.0062539086929325905	spindle
GO:0051300	0.007703081232493212	spindle pole body organization

Set81a:
HAP5 ROX1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set81b:
SED1 SIT4 ATP1 STP4 PRB1 TIM23 ACC1 
7
GO:0045267	0.006616257088847775	proton-transporting ATP synthase, catalytic core
GO:0005739	0.008148677911902984	mitochondrion

Set82a:
MBP1 SWI4 STE12 ACE2 PHD1 
5
GO:0001071	5.181868316132538E-6	nucleic acid binding transcription factor activity
GO:0048518	2.354697059017266E-5	positive regulation of biological process
GO:0048522	4.319218940071446E-5	positive regulation of cellular process
GO:0009893	0.002025173565607088	positive regulation of metabolic process
GO:0031325	0.002446983208721204	positive regulation of cellular metabolic process
GO:0050789	0.0034359642741450124	regulation of biological process
GO:0031323	0.0039920825848957795	regulation of cellular metabolic process
GO:0050794	0.004816993208620784	regulation of cellular process
GO:0019222	0.005024513196411015	regulation of metabolic process
GO:0080090	0.0053941290632051634	regulation of primary metabolic process
GO:0005667	0.005628517823639318	transcription factor complex
GO:0065007	0.005794872088728441	biological regulation
GO:0001067	0.006954501118574408	regulatory region nucleic acid binding
GO:0016049	0.007152738541015031	cell growth
GO:0051173	0.007186176588966426	positive regulation of nitrogen compound metabolic process
GO:0010604	0.007996427149540975	positive regulation of macromolecule metabolic process
GO:0032774	0.008836303150255957	RNA biosynthetic process
GO:0051171	0.009712382968487908	regulation of nitrogen compound metabolic process

Set82b:
YSY6 YDR524W-A TOS1 AGE1 EXO5 RBA50 SNA2 AGE1-B 
8

Set83a:
CBF1 RAP1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0090153	0.008264462809916032	regulation of sphingolipid biosynthetic process

Set83b:
RPS4A PFK27 CAP1 LAC1 YJL133C-A MRS3 RPL11A YHR033W HMS2 PRE2 
10
GO:0008290	0.007220216606497868	F-actin capping protein complex

Set84a:
RAP1 SKN7 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set84b:
RPS15 MAM3 TNA1 RAD2 GPD2 RPP2A RPL12A 
7
GO:0006072	0.0075187969924814975	glycerol-3-phosphate metabolic process
GO:0035353	0.0095238095238093	nicotinamide mononucleotide transmembrane transport

Set85a:
GLN3 FHL1 
2
GO:0032545	0.00303951367781151	CURI complex
GO:0042126	0.007511717145976385	nitrate metabolic process
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set85b:
SEC10 RPS20-A DUR3 RPS20 RPS31 
5
GO:0019627	0.0031545741324918346	urea metabolic process
GO:0015935	0.0036830807980807946	small ribosomal subunit
GO:0000145	0.003759398496240955	exocyst
GO:0031386	0.0070639969327868065	protein tag
GO:0022406	0.0079720678523083	membrane docking
GO:0071918	0.009433962264151104	urea transmembrane transport

Set86a:
SWI6 SNT2 
2

Set86b:
SRS2 THI22 tC(GCA)P2 TOK1 YPR120C 
5
GO:0071804	0.004990019960075383	cellular potassium ion transport

Set87a:
RME1 NDD1 
2

Set87b:
RGT1 AIM38 snR69 RUP1 SFL1 
5

Set88a:
YAP5 REB1 
2

Set88b:
CLB3 IRC23 PET111 YKL072W SUI2 
5
GO:0033043	0.004078840030525947	regulation of organelle organization
GO:0005850	0.004518072289156083	eukaryotic translation initiation factor 2 complex
GO:0051128	0.00763425380622143	regulation of cellular component organization
GO:0045182	0.008826083894748446	translation regulator activity

Set89a:
RLM1 SKO1 XBP1 
3

Set89b:
IME2 YJL107C SED1 
3

Set90a:
ADR1 MET31 DAL82 MAC1 MET4 
5
GO:0001071	5.181868316132538E-6	nucleic acid binding transcription factor activity
GO:0000988	5.211258204239408E-4	protein binding transcription factor activity
GO:0048518	9.110180212425138E-4	positive regulation of biological process
GO:0048522	0.0014600268871665743	positive regulation of cellular process
GO:0009893	0.002025173565607088	positive regulation of metabolic process
GO:0031325	0.002446983208721204	positive regulation of cellular metabolic process
GO:0009896	0.0033526786876179986	positive regulation of catabolic process
GO:0050789	0.0034359642741450124	regulation of biological process
GO:0031323	0.0039920825848957795	regulation of cellular metabolic process
GO:0050794	0.004816993208620784	regulation of cellular process
GO:0019222	0.005024513196411015	regulation of metabolic process
GO:0080090	0.0053941290632051634	regulation of primary metabolic process
GO:0065007	0.005794872088728441	biological regulation
GO:0001067	0.006954501118574408	regulatory region nucleic acid binding
GO:0051173	0.007186176588966426	positive regulation of nitrogen compound metabolic process
GO:0010565	0.007792044496322106	regulation of cellular ketone metabolic process
GO:0010604	0.007996427149540975	positive regulation of macromolecule metabolic process
GO:0032774	0.008836303150255957	RNA biosynthetic process
GO:0051171	0.009712382968487908	regulation of nitrogen compound metabolic process

Set90b:
GLC7 snR52 
2
GO:0072690	0.003990021954094283	vegetative growth of a single-celled organism
GO:0005849	0.004048582995951182	mRNA cleavage factor complex
GO:0000164	0.0072727272727264305	protein phosphatase type 1 complex

Set91a:
SWI5 CBF1 
2
GO:0090153	0.008264462809916032	regulation of sphingolipid biosynthetic process

Set91b:
UBC4 TEC1 BMH1 PSK1 ERG25 YAL018C YHR033W 
7
GO:0033692	0.002729560323104229	cellular polysaccharide biosynthetic process
GO:0000271	0.003137206443920947	polysaccharide biosynthetic process
GO:0044264	0.004614561389134947	cellular polysaccharide metabolic process
GO:0005976	0.006739985861703883	polysaccharide metabolic process
GO:0010530	0.006993006993006685	positive regulation of transposition
GO:0051439	0.008196721311475488	regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle

Set92a:
SWI4 MOT3 SKO1 
3
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0071214	0.0027648611285658476	cellular response to abiotic stimulus
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0071470	0.005366726296958866	cellular response to osmotic stress
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set92b:
GAC1 MGA1 SOK2 UTH1 SPO20 
5

Set93a:
UME6 BAS1 
2
GO:0034389	0.004184100418409662	lipid particle organization
GO:0022414	0.006267458510370168	reproductive process
GO:0048610	0.007986025950098693	cellular process involved in reproduction
GO:0000003	0.009381626409405661	reproduction
GO:0051039	0.0095238095238093	positive regulation of transcription during meiosis

Set93b:
PAC1 STR3 HRK1 HSC82 JEN1 SRY1 
6

Set94a:
RAP1 REB1 
2

Set94b:
CSR2 EHD3 GEA2 YEL023C KRS1 ECM19-A APL4 
7
GO:0016192	0.0017693006152811818	vesicle-mediated transport
GO:0044431	0.006300580848470232	Golgi apparatus part
GO:0030119	0.008086223875701525	AP-type membrane coat adaptor complex
GO:0031984	0.009679317446310847	organelle subcompartment

Set95a:
RAP1 NDD1 
2

Set95b:
snR40 COT1 COT1-A YGR143W TDH3 FAA1 CAF40 
7
GO:0005811	0.0010887976433285695	lipid particle
GO:0035383	0.006257822277842747	thioester metabolic process
GO:0034637	0.007467343423006204	cellular carbohydrate biosynthetic process
GO:0030015	0.008097165991902366	CCR4-NOT core complex
GO:0016051	0.008687690073926205	carbohydrate biosynthetic process

Set96a:
INO4 PHO2 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0051098	0.008708236010966378	regulation of binding
GO:0051099	0.008875700626444542	positive regulation of binding

Set96b:
CHO2 YBR085C-A YPR013C TPI1 FBA1 
5
GO:0034637	0.007467343423006204	cellular carbohydrate biosynthetic process
GO:0016051	0.008687690073926205	carbohydrate biosynthetic process
GO:0006066	0.009806162173836612	alcohol metabolic process

Set97a:
PHO2 DAL82 NDD1 
3
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set97b:
CWP2 PST2 YKL096C-B MRH1 
4
GO:0005576	0.005371310770796439	extracellular region
GO:0044425	0.005552733281831514	membrane part

Set98a:
GLN3 MOT3 TEC1 
3
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0051716	0.008384515738521489	cellular response to stimulus
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set98b:
RHO3 RPI1 snR61 
3
GO:0045921	0.006896551724137712	positive regulation of exocytosis
GO:0009110	0.009861932938853946	vitamin biosynthetic process

Set99a:
HAP4 SKN7 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set99b:
SDH1 YLR297W ATP1 ATP14 AVT3 
5
GO:0055085	1.1313359968281694E-4	transmembrane transport
GO:0031090	4.2438171678979694E-4	organelle membrane
GO:0034654	5.510422041687975E-4	nucleobase-containing compound biosynthetic process
GO:0045259	5.695954078513249E-4	proton-transporting ATP synthase complex
GO:0018130	7.011471369957516E-4	heterocycle biosynthetic process
GO:0019866	0.0010770110462931823	organelle inner membrane
GO:0044425	0.0015064359736804542	membrane part
GO:0016469	0.002424629940567986	proton-transporting two-sector ATPase complex
GO:0006818	0.0027445940014239074	hydrogen transport
GO:0044271	0.003077058570757809	cellular nitrogen compound biosynthetic process
GO:0016020	0.003541506523905584	membrane
GO:0005215	0.004623272506471952	transporter activity
GO:0045281	0.004725897920600487	succinate dehydrogenase complex
GO:0045283	0.004725897920600487	fumarate reductase complex
GO:0045267	0.004725897920600487	proton-transporting ATP synthase, catalytic core
GO:0045273	0.004725897920600487	respiratory chain complex II
GO:0072522	0.0058587171915753765	purine-containing compound biosynthetic process
GO:0031975	0.005907713433625028	envelope
GO:0009142	0.006237216743282153	nucleoside triphosphate biosynthetic process
GO:0044455	0.006358326228298574	mitochondrial membrane part
GO:0046483	0.007327722685779042	heterocycle metabolic process
GO:0009145	0.007335638819819827	purine nucleoside triphosphate biosynthetic process
GO:0009201	0.007543251239248777	ribonucleoside triphosphate biosynthetic process
GO:0009206	0.007758772703227104	purine ribonucleoside triphosphate biosynthetic process
GO:0051234	0.009377229172570067	establishment of localization

Set100a:
STE12 INO2 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set100b:
SAM35 KSP1 RHO5 RPS3 TIM23 ACC1 
6
GO:0051641	0.003167831096361426	cellular localization
GO:0001401	0.007692307692307168	mitochondrial sorting and assembly machinery complex

Set101a:
SOK2 MAC1 SUT1 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity

Set101b:
LSM5 YKL063C FTR1 MSN4 CUP9 
5
GO:0033573	0.007692307692307591	high affinity iron permease complex

Set102a:
MBP1 SWI4 GCN4 PHD1 
4
GO:0001071	6.020583084831739E-5	nucleic acid binding transcription factor activity
GO:0048518	2.0104118072084663E-4	positive regulation of biological process
GO:0048522	3.2655912895425713E-4	positive regulation of cellular process
GO:0009893	4.5765085988733206E-4	positive regulation of metabolic process
GO:0031325	5.56609914430763E-4	positive regulation of cellular metabolic process
GO:0051173	0.0017103808914118003	positive regulation of nitrogen compound metabolic process
GO:0010604	0.0019142550561718134	positive regulation of macromolecule metabolic process
GO:0009891	0.002519625238377181	positive regulation of biosynthetic process
GO:0031328	0.002790657755469802	positive regulation of cellular biosynthetic process
GO:0045935	0.003247105670396677	positive regulation of nucleobase-containing compound metabolic process
GO:0010628	0.0050883905597982095	positive regulation of gene expression
GO:0005667	0.005628517823639318	transcription factor complex
GO:0010557	0.00838050437132659	positive regulation of macromolecule biosynthetic process

Set102b:
GID8 ICY1 GAT2 CMC4 
4
GO:0034657	0.004044489383216766	GID complex

Set103a:
HAP1 FKH1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set103b:
RGT1 snR69 JEN1 IDI1 HOS3 SRY1 
6

Set104a:
STP1 RTG3 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set104b:
DIP5 YBL104C GNP1 SMT3 
4
GO:0031386	0.0070639969327868065	protein tag
GO:0071944	0.009353969292453596	cell periphery

Set105a:
YAP5 MSN4 
2
GO:0071241	0.001120238984316606	cellular response to inorganic substance
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set105b:
RTC3 ENO1 PUP2 NAM8-A 
4
GO:0019773	0.00606059365571654	proteasome core complex, alpha-subunit complex
GO:0000015	0.006578947368420024	phosphopyruvate hydratase complex

Set106a:
MBP1 STB5 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set106b:
TOF1 GOR1 BNR1 POT1 
4
GO:0016054	0.004809894640402144	organic acid catabolic process
GO:0005522	0.005494505494505476	profilin binding

Set107a:
CBF1 RDS1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0090153	0.008264462809916032	regulation of sphingolipid biosynthetic process

Set107b:
MNN2 YBR016W BUD27 EPL1 
4
GO:0016272	0.006578947368420024	prefoldin complex

Set108a:
MCM1 GCR2 
2

Set108b:
MMR1 ATG26 CDC6 ELO1 
4

Set109a:
DAL82 GCR2 
2

Set109b:
RFC5 IST2 SYS1 COX16 
4
GO:0005663	0.003787878787878903	DNA replication factor C complex
GO:0031391	0.003787878787878903	Elg1 RFC-like complex
GO:0031390	0.003787878787878903	Ctf18 RFC-like complex
GO:0031389	0.003787878787878903	Rad17 RFC-like complex
GO:0003689	0.005494505494505476	DNA clamp loader activity

Set110a:
REB1 HAP2 
2

Set110b:
tG(GCC)G2 FMP43 YAP1802 CRM1 
4
GO:0044430	0.008793881703582153	cytoskeletal part

Set111a:
PHO4 AFT2 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set111b:
APT2 PHO89 MAL33 PHO89-A 
4

Set112a:
XBP1 AFT2 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set112b:
YNL193W YNL194C tK(UUU)P CLB2 
4

Set113a:
HSF1 MOT3 
2
GO:0030474	0.004608294930875325	spindle pole body duplication

Set113b:
SSA1 snR18 EFB1 YGR142W 
4
GO:0030529	0.0068433855687600915	ribonucleoprotein complex

Set114a:
STP1 MSN2 SKN7 BAS1 
4
GO:0001071	0.0025913081073285975	nucleic acid binding transcription factor activity

Set114b:
TPO4 MOD5 
2

Set115a:
CBF1 UME6 MCM1 NDD1 
4
GO:0000988	2.1428507003319077E-4	protein binding transcription factor activity
GO:0044427	0.002157421624681818	chromosomal part
GO:0001071	0.0025913081073285975	nucleic acid binding transcription factor activity
GO:0005515	0.005314620789852395	protein binding
GO:0048518	0.006217160724096565	positive regulation of biological process
GO:0034389	0.008368200836818863	lipid particle organization
GO:0048522	0.008831828472544836	positive regulation of cellular process

Set115b:
SFB3 TRA1 
2

Set116a:
HAP5 PHD1 SUT1 YAP6 
4
GO:0001071	6.020583084831739E-5	nucleic acid binding transcription factor activity
GO:0048518	2.0104118072084663E-4	positive regulation of biological process
GO:0048522	3.2655912895425713E-4	positive regulation of cellular process
GO:0009893	4.5765085988733206E-4	positive regulation of metabolic process
GO:0031325	5.56609914430763E-4	positive regulation of cellular metabolic process
GO:0051173	0.0017103808914118003	positive regulation of nitrogen compound metabolic process
GO:0010604	0.0019142550561718134	positive regulation of macromolecule metabolic process
GO:0009891	0.002519625238377181	positive regulation of biosynthetic process
GO:0031328	0.002790657755469802	positive regulation of cellular biosynthetic process
GO:0045935	0.003247105670396677	positive regulation of nucleobase-containing compound metabolic process
GO:0010628	0.0050883905597982095	positive regulation of gene expression
GO:0010557	0.00838050437132659	positive regulation of macromolecule biosynthetic process

Set116b:
TIR3 PDR11 
2

Set117a:
STB2 ABF1 CST6 RCS1 
4

Set117b:
ALG1 CMD1 
2
GO:0044450	0.003616636528029585	microtubule organizing center part
GO:0044255	0.003661258837925632	cellular lipid metabolic process
GO:0048306	0.005494505494505476	calcium-dependent protein binding
GO:0006629	0.006809315521930216	lipid metabolic process

Set118a:
YAP6 HSF1 ROX1 PHO4 
4
GO:0001071	6.020583084831739E-5	nucleic acid binding transcription factor activity
GO:0048519	0.0041002021474272135	negative regulation of biological process
GO:0030474	0.004608294930875325	spindle pole body duplication
GO:0048523	0.00527437432826523	negative regulation of cellular process
GO:0000988	0.008447845205531702	protein binding transcription factor activity

Set118b:
ECL1 ECL1-A 
2

Set119a:
CBF1 HAP4 REB1 HAP3 
4
GO:0001071	0.0025913081073285975	nucleic acid binding transcription factor activity
GO:0048518	0.006217160724096565	positive regulation of biological process
GO:0043467	0.00721414220404488	regulation of generation of precursor metabolites and energy
GO:0000988	0.008447845205531702	protein binding transcription factor activity
GO:0048522	0.008831828472544836	positive regulation of cellular process

Set119b:
YML119W NDI1 
2
GO:0010941	0.005681818181817997	regulation of cell death
GO:0008219	0.008982035928142435	cell death

Set120a:
ABF1 TEC1 
2

Set120b:
UME6 COY1 snR61 MSS4 
4
GO:0019637	0.0031589946237616383	organophosphate metabolic process
GO:0034389	0.004184100418409662	lipid particle organization
GO:0051039	0.0095238095238093	positive regulation of transcription during meiosis
GO:0045896	0.00990099009900975	regulation of transcription during mitosis

Set121a:
RAP1 PHO2 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0051098	0.008708236010966378	regulation of binding
GO:0051099	0.008875700626444542	positive regulation of binding

Set121b:
RPS13 TDH3 HIS4 RPS11B NOB1 GPM1 ACA1 SPO73 ATG19 YHR122W SGT1 
11
GO:0051287	0.0024132332938440106	NAD binding
GO:0030674	0.00417716949614989	protein binding, bridging
GO:0070181	0.007936507936507959	SSU rRNA binding

Set122a:
GCN4 REB1 
2
GO:2000144	0.008130081300812846	positive regulation of transcription initiation, DNA-dependent

Set122b:
HVG1-A MRPS17 IRC23 HVG1 GLN3 GCV2 
6
GO:0042126	0.007511717145976385	nitrate metabolic process

Set123a:
RAP1 CHA4 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set123b:
LAC1 YNL010W SAP1 YNL011C CAP1 
5
GO:0008290	0.0036101083032491327	F-actin capping protein complex
GO:0046467	0.007889546351083158	membrane lipid biosynthetic process
GO:0032271	0.00867052023121341	regulation of protein polymerization

Set124a:
SWI5 SWI6 SOK2 
3

Set124b:
PHD1 YGR189C EXG1 
3
GO:0005576	0.00273892945580637	extracellular region
GO:0005976	0.003442935359539943	polysaccharide metabolic process
GO:0030312	0.003700806538174563	external encapsulating structure
GO:0016798	0.005712133576046458	hydrolase activity, acting on glycosyl bonds

Set125a:
HAP1 REB1 
2

Set125b:
COX13 ASK1 CYB5 SFK1 
4
GO:0006091	0.0067283352310704946	generation of precursor metabolites and energy
GO:0006629	0.006809315521930216	lipid metabolic process
GO:0042729	0.007662835249040994	DASH complex
GO:0008610	0.009269356597604242	lipid biosynthetic process

Set126a:
CAD1 YAP7 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set126b:
NFU1 LSB6 DRE2 YHB1 LAP4 HSL1 PHO81 MRS4 PTM1 TAH18 CYT2 GSH1 CCS1 SRX1 
14
GO:0051188	2.6156171277838796E-4	cofactor biosynthetic process
GO:0031970	8.077295391782595E-4	organelle envelope lumen
GO:0044429	0.002322767288884621	mitochondrial part
GO:0016209	0.004877865498842123	antioxidant activity
GO:0043167	0.008341238197262766	ion binding
GO:0006979	0.008681173862477583	response to oxidative stress

Set127a:
GCR1 GCR2 ROX1 YOR344C PHD1 STE12 SNT2 
7
GO:0001071	9.391607091328341E-5	nucleic acid binding transcription factor activity
GO:0043471	9.710578329323091E-5	regulation of cellular carbohydrate catabolic process
GO:0048522	2.3077712431061328E-4	positive regulation of cellular process
GO:0009893	3.4769872765100175E-4	positive regulation of metabolic process
GO:0048518	4.0335305376688457E-4	positive regulation of biological process
GO:0031325	4.411400091743416E-4	positive regulation of cellular metabolic process
GO:0010675	5.402979160492836E-4	regulation of cellular carbohydrate metabolic process
GO:0043470	5.844535359439019E-4	regulation of carbohydrate catabolic process
GO:0043467	7.2835248668015E-4	regulation of generation of precursor metabolites and energy
GO:0006109	8.753028164774346E-4	regulation of carbohydrate metabolic process
GO:0016052	0.0011055540931822025	carbohydrate catabolic process
GO:0044428	0.0012594230417950197	nuclear part
GO:0031323	0.0013129300734310142	regulation of cellular metabolic process
GO:0044282	0.001317978244228108	small molecule catabolic process
GO:0072361	0.001378929950358516	regulation of glycolysis by regulation of transcription from RNA polymerase II promoter
GO:0072363	0.0014333492594362004	regulation of glycolysis by positive regulation of transcription from RNA polymerase II promoter
GO:0050794	0.0016475372960281444	regulation of cellular process
GO:0019222	0.0017315787300720689	regulation of metabolic process
GO:0080090	0.001884442490912388	regulation of primary metabolic process
GO:0010604	0.0019601684334308515	positive regulation of macromolecule metabolic process
GO:0006110	0.0019762845849802227	regulation of glycolysis
GO:0032774	0.0034022992056635627	RNA biosynthetic process
GO:0051171	0.0038131362710791396	regulation of nitrogen compound metabolic process
GO:0006096	0.00401899890390935	glycolysis
GO:0060963	0.00423634336677817	positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter
GO:0009889	0.004395450539561947	regulation of biosynthetic process
GO:0031329	0.004785502359976791	regulation of cellular catabolic process
GO:0009894	0.0053955147725963165	regulation of catabolic process
GO:0050789	0.005586401879189182	regulation of biological process
GO:0060255	0.005673982302805024	regulation of macromolecule metabolic process
GO:0031326	0.0060816078543365	regulation of cellular biosynthetic process
GO:0006091	0.008999067809502997	generation of precursor metabolites and energy
GO:0060962	0.00905781365606931	regulation of ribosomal protein gene transcription from RNA polymerase II promoter
GO:0019219	0.00965476391188814	regulation of nucleobase-containing compound metabolic process
GO:0006066	0.009806162173836612	alcohol metabolic process

Set127b:
CDC19 CYC3 
2

Set128a:
REB1 YRR1 
2

Set128b:
NOP8 CTR9 PRP22 SOG2 
4
GO:0000386	0.002136752136752216	second spliceosomal transesterification activity
GO:0009302	0.004629629629629636	snoRNA transcription
GO:2001207	0.004926108374384399	regulation of transcription elongation from RNA polymerase I promoter
GO:0001015	0.006493506493506457	snoRNA transcription from an RNA polymerase II promoter
GO:0008023	0.00809716599190192	transcription elongation factor complex

Set129a:
GCN4 SUM1 
2
GO:0010944	3.702332469455773E-4	negative regulation of transcription by competitive promoter binding
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:2000144	0.008130081300812846	positive regulation of transcription initiation, DNA-dependent

Set129b:
YJR027W YJR026W ORC3 SPO75 BNA1 YGL170C SUA5 
7
GO:0000943	0.0010967416689815052	retrotransposon nucleocapsid
GO:0032196	0.001149206094412552	transposition
GO:0006259	0.004381141455313292	DNA metabolic process
GO:0032502	0.007198731082707747	developmental process

Set130a:
STE12 TEC1 FKH2 
3
GO:0016049	1.9597169297765377E-5	cell growth
GO:0040007	5.900633702700491E-5	growth
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0000988	0.004331065137782144	protein binding transcription factor activity
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set130b:
SIM1 FRT2 BUD8 YOR246C MYO4 SRL1 
6
GO:0016459	0.0036101083032491327	myosin complex
GO:0031941	0.0036101083032491327	filamentous actin
GO:0005933	0.003950437478893611	cellular bud
GO:0030427	0.005265051152461298	site of polarized growth
GO:0009986	0.005535055350551623	cell surface

Set131a:
SFP1 MSN4 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set131b:
snR18 TEM1 SSA1 RPS1B RPS5 RPL11A EFB1 PRE2 
8
GO:0030529	7.496298053916873E-5	ribonucleoprotein complex
GO:0044445	7.61940081291619E-4	cytosolic part
GO:0032991	0.0016805958485290068	macromolecular complex
GO:0071840	0.005366472563467287	cellular component organization or biogenesis
GO:0006412	0.005988458776399072	translation
GO:0071841	0.0073288058408922906	cellular component organization or biogenesis at cellular level
GO:0005840	0.008526947838183587	ribosome
GO:0043228	0.009955122871843164	non-membrane-bounded organelle
GO:0043232	0.009955122871843164	intracellular non-membrane-bounded organelle

Set132a:
RTG3 SUT1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set132b:
HAP4 PDR16 ECM13 IDH2 ACS1 KTI12 FLC2 
7
GO:0006091	0.004781510351306706	generation of precursor metabolites and energy
GO:0035350	0.0095238095238093	FAD transmembrane transport

Set133a:
CBF1 INO4 
2
GO:0044255	0.003661258837925632	cellular lipid metabolic process
GO:0006629	0.006809315521930216	lipid metabolic process
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0090153	0.008264462809916032	regulation of sphingolipid biosynthetic process
GO:0008610	0.009269356597604242	lipid biosynthetic process

Set133b:
RPI1 RHO3 STE20 IES5 ERG20 SAH1 SET2 MET6 
8
GO:0006790	0.0013675347006611262	sulfur compound metabolic process
GO:0006730	0.0018283527908426725	one-carbon metabolic process
GO:0010638	0.0019850448968830934	positive regulation of organelle organization
GO:0051130	0.002414871752920223	positive regulation of cellular component organization
GO:0009300	0.004672897196261788	antisense RNA transcription
GO:0060194	0.004950495049504874	regulation of antisense RNA transcription
GO:0000267	0.007404261356075476	cell fraction
GO:0001887	0.008760951188989239	selenium compound metabolic process
GO:0003824	0.009278048887047531	catalytic activity
GO:0032268	0.009977885891202635	regulation of cellular protein metabolic process

Set134a:
NRG1 ASH1 
2
GO:0016049	7.537372806834754E-4	cell growth
GO:0040007	0.0015492594070577977	growth
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set134b:
HAP4 SED1 ELO1 GID8 GAT2 UTR2 KTI12 CDC6 
8
GO:0003682	0.002738607338988672	chromatin binding
GO:0034657	0.007077856420629176	GID complex

Set135a:
YAP6 SFP1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set135b:
SED1 RPL23A snR40 HMS1 YOR032W-A CAF40 
6
GO:0030015	0.008097165991902366	CCR4-NOT core complex

Set136a:
STP1 GLN3 GCN4 
3
GO:0019740	2.568376607803346E-4	nitrogen utilization
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0009719	7.653409867431321E-4	response to endogenous stimulus
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0006808	0.0019914960404520234	regulation of nitrogen utilization
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0090293	0.004015429849727145	nitrogen catabolite regulation of transcription
GO:0001079	0.004172571248622252	nitrogen catabolite regulation of transcription from RNA polymerase II promoter
GO:0090294	0.005189309015794733	nitrogen catabolite activation of transcription
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set136b:
RRI2 QDR3 MCH4 
3
GO:0008180	0.00303951367781151	signalosome

Set137a:
ACE2 RAP1 
2
GO:2001041	0.0057803468208086255	regulation of cytokinetic cell separation involved in cell cycle cytokinesis
GO:2001043	0.0073529411764705266	positive regulation of cytokinetic cell separation involved in cell cycle cytokinesis
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set137b:
RPS4A YGR283C YKL151C MCR1 HMS2 CTS1 
6
GO:0001871	0.0029850746268659956	pattern binding

Set138a:
MSN2 RGT1 STE12 SKN7 IXR1 
5
GO:0001071	2.803016809767777E-4	nucleic acid binding transcription factor activity
GO:0050789	0.0034359642741450124	regulation of biological process
GO:0031323	0.0039920825848957795	regulation of cellular metabolic process
GO:0050794	0.004816993208620784	regulation of cellular process
GO:0019222	0.005024513196411015	regulation of metabolic process
GO:0080090	0.0053941290632051634	regulation of primary metabolic process
GO:0065007	0.005794872088728441	biological regulation
GO:0051716	0.007093319392631317	cellular response to stimulus
GO:0032774	0.008836303150255957	RNA biosynthetic process
GO:0048519	0.009470508493640681	negative regulation of biological process
GO:0051171	0.009712382968487908	regulation of nitrogen compound metabolic process

Set138b:
YKR075C ECM4 
2
GO:0006518	0.008760951188986421	peptide metabolic process

Set139a:
MSN2 SOK2 DAL80 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity

Set139b:
KNH1 CIN5 DFG16 
3

Set140a:
MSN2 UME6 
2
GO:0032502	0.003999906105494663	developmental process
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0034389	0.008368200836818863	lipid particle organization

Set140b:
CUE4 TSL1-A DMC1 TSL1 YCR061W YIH1 
6
GO:0005946	0.0030120481927717623	alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)
GO:0000709	0.008333333333333401	meiotic joint molecule formation

Set141a:
ARG80 STE12 
2

Set141b:
YER048C YOX1 UBC4 TEC1 CUP9 tQ(UUG)E1 
6
GO:0000988	0.0010139058887696387	protein binding transcription factor activity
GO:0005515	0.006632206110645157	protein binding
GO:0010530	0.006993006993006685	positive regulation of transposition

Set142a:
SPT23 SWI6 
2

Set142b:
YNK1 tH(GUG)K SPB1 
3
GO:0072527	0.007626289901189465	pyrimidine-containing compound metabolic process
GO:0009132	0.00787401574803151	nucleoside diphosphate metabolic process
GO:0009218	0.009174311926605555	pyrimidine ribonucleotide metabolic process
GO:0009147	0.009900990099009768	pyrimidine nucleoside triphosphate metabolic process

Set143a:
CST6 RLM1 
2

Set143b:
VPS74 FRQ1 snR53 
3
GO:0005794	0.007362471079558774	Golgi apparatus

Set144a:
STB1 MOT3 
2
GO:2000243	0.009615384615384361	positive regulation of reproductive process

Set144b:
TOS2 PET54 UTR2 
3
GO:0045182	0.005300345062327155	translation regulator activity

Set145a:
ABF1 DIG1 MSN4 
3
GO:0051716	0.008384515738521489	cellular response to stimulus

Set145b:
YLR454W RIF2 
2

Set146a:
STP1 YAP6 RLM1 
3
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set146b:
LYS9 snR49 
2

Set147a:
STE12 SUM1 CHA4 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity

Set147b:
TFB1 SUM1 
2
GO:0032806	0.00303951367781151	carboxy-terminal domain protein kinase complex
GO:0000441	0.004048582995951182	SSL2-core TFIIH complex

Set148a:
NRG1 STE12 MCM1 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0016049	0.0022220175034543205	cell growth
GO:0051704	0.0030620671192335114	multi-organism process
GO:0040007	0.004529765547119604	growth

Set148b:
NUR1 RAM1 
2
GO:0005965	0.0030120481927712432	protein farnesyltransferase complex

Set149a:
STE12 REB1 DAL80 
3

Set149b:
ARF3 YOR093C 
2

Set150a:
STE12 GCN4 MAC1 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set150b:
PRM5 HIS5 
2

Set151a:
MOT3 RPN4 MCM1 
3

Set151b:
UFD1 TFC4 
2
GO:0034098	0.008376935679935055	Cdc48p-Npl4p-Ufd1p AAA ATPase complex
GO:0001016	0.00925925925925929	RNA polymerase III regulatory region DNA binding
GO:0000992	0.009345794392523593	polymerase III regulatory region sequence-specific DNA binding
GO:0001034	0.009345794392523593	sequence-specific DNA binding RNA polymerase III transcription factor activity

Set152a:
MBP1 NRG1 RAP1 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0048519	0.0011099179319168585	negative regulation of biological process
GO:0009892	0.0013472958361173794	negative regulation of metabolic process
GO:0031324	0.0014077578122130934	negative regulation of cellular metabolic process
GO:0048523	0.001438465725890594	negative regulation of cellular process
GO:0051172	0.0028668339501475063	negative regulation of nitrogen compound metabolic process
GO:0010605	0.003386481637834185	negative regulation of macromolecule metabolic process
GO:0009890	0.003714371850900304	negative regulation of biosynthetic process
GO:0031327	0.004077243694867415	negative regulation of cellular biosynthetic process
GO:0045934	0.004659058756955219	negative regulation of nucleobase-containing compound metabolic process
GO:0010629	0.00745623602274447	negative regulation of gene expression
GO:0010558	0.00965368463846939	negative regulation of macromolecule biosynthetic process

Set152b:
KES1 POC4 
2

Set153a:
SWI5 PHO2 MSN4 
3

Set153b:
MRPL4 LSM3 
2

Set154a:
PHO2 GTS1 GCR2 
3
GO:0044093	0.0015041625976809964	positive regulation of molecular function
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0048511	0.002652519893899939	rhythmic process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0000988	0.004331065137782144	protein binding transcription factor activity
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process
GO:0071072	0.009803921568627428	negative regulation of phospholipid biosynthetic process

Set154b:
ADH1 PHM7 
2

Set155a:
HSF1 HAC1 AFT2 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0051716	0.008384515738521489	cellular response to stimulus
GO:0030474	0.009216589861750144	spindle pole body duplication

Set155b:
KAR2 TAD2 
2
GO:0034099	0.0034482758620686537	luminal surveillance complex

Set156a:
MSN2 ABF1 AFT2 
3
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0051716	0.008384515738521489	cellular response to stimulus
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set156b:
SSC1 YJR046W 
2
GO:0072379	0.006578947368420024	ER membrane insertion complex
GO:0043335	0.00719424460431706	protein unfolding

Set157a:
CBF1 HSF1 REB1 
3
GO:0030474	0.004608294930875325	spindle pole body duplication

Set157b:
BUD7 MBF1 
2
GO:0034044	0.0036900369003690227	exomer complex

Set158a:
NRG1 PHO4 HAP2 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0007154	0.0011213935764833173	cell communication
GO:0009605	0.002368573871612081	response to external stimulus
GO:0031668	0.00476068553871796	cellular response to extracellular stimulus
GO:0051716	0.008384515738521489	cellular response to stimulus
GO:0045990	0.009428106989802806	carbon catabolite regulation of transcription

Set158b:
CTF19 VTC3 
2
GO:0000817	0.007662835249040994	COMA complex
GO:0033254	0.009022515400973773	vacuolar transporter chaperone complex

Set159a:
ARG80 ASH1 
2
GO:2000242	0.005376344086021723	negative regulation of reproductive process
GO:0051093	0.005747126436781691	negative regulation of developmental process
GO:0045596	0.006849315068493371	negative regulation of cell differentiation

Set159b:
PCL1 SED1 YHP1 PPN1 
4
GO:0048584	0.008982035928142914	positive regulation of response to stimulus
GO:0010647	0.009708737864078032	positive regulation of cell communication

Set160a:
STB2 REB1 
2

Set160b:
SOG2 YUH1 YJR098C 
3

Set161a:
ABF1 ARR1 
2

Set161b:
snR55 HRB1 snR57 snR61 MRP7 
5
GO:0030529	2.7681842005585777E-5	ribonucleoprotein complex
GO:0043414	1.122270764912271E-4	macromolecule methylation
GO:0006730	2.2700567481120538E-4	one-carbon metabolic process
GO:0009451	2.691501356723505E-4	RNA modification
GO:0032991	0.0029880516099231986	macromolecular complex
GO:0031974	0.003797021549017607	membrane-enclosed lumen
GO:0000496	0.004512333780670477	base pairing

Set162a:
MBP1 PHO4 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set162b:
APT2 PDR8 BOP2 
3

Set163a:
GLN3 SKN7 
2
GO:0042126	0.007511717145976385	nitrate metabolic process
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set163b:
AIM38 RPI1 DOT6 ICS2 RHO3 PMC1 PMA1 BAT2 ARG1 AMN1 PMC1-A YGL007C-A 
12
GO:0044271	0.001019454896099712	cellular nitrogen compound biosynthetic process
GO:0034655	0.005536114134482852	nucleobase-containing compound catabolic process
GO:0045921	0.006896551724137712	positive regulation of exocytosis
GO:0048589	0.009433962264151104	developmental growth

Set164a:
INO4 ARG80 GCR2 
3
GO:0048518	0.0017050710665647084	positive regulation of biological process
GO:0048522	0.0024528764648521924	positive regulation of cellular process
GO:0009893	0.00316195139558436	positive regulation of metabolic process
GO:0031325	0.0036616652222044637	positive regulation of cellular metabolic process
GO:0051173	0.008503949852626801	positive regulation of nitrogen compound metabolic process
GO:0010604	0.009244052194333488	positive regulation of macromolecule metabolic process

Set164b:
FBA1 WTM1 
2

Set165a:
REB1 DAL82 
2

Set165b:
PET111 PRM1 ERG24 
3
GO:0045182	0.005300345062327155	translation regulator activity

Set166a:
CIN5 REB1 
2

Set166b:
YKL072W SEC24 YIL108W 
3
GO:0030117	0.00944669365722106	membrane coat

Set167a:
RAP1 SUM1 
2
GO:0016458	8.67396076977019E-4	gene silencing
GO:0071897	0.005533928707731427	DNA biosynthetic process
GO:0006260	0.005533928707731427	DNA replication
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set167b:
TNA1 YOR365C RAD2 SCP1 
4
GO:0035353	0.0095238095238093	nicotinamide mononucleotide transmembrane transport

Set168a:
HAP5 ABF1 
2

Set168b:
EFT2 ATO3 FAS1 
3
GO:0005835	0.006578947368420386	fatty acid synthase complex

Set169a:
ABF1 CIN5 
2

Set169b:
MSN1 FAS1 HXK2 
3
GO:0005835	0.006578947368420386	fatty acid synthase complex
GO:0035956	0.006849315068493371	regulation of starch catabolic process by regulation of transcription from RNA polymerase II promoter
GO:2000906	0.008333333333333401	positive regulation of starch metabolic process

Set170a:
YAP6 RCS1 PHO2 
3
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0051098	0.008708236010966378	regulation of binding
GO:0051099	0.008875700626444542	positive regulation of binding

Set170b:
HSP78 SEN1 HSP30 
3
GO:0044270	0.004677698365550104	cellular nitrogen compound catabolic process
GO:0051787	0.005494505494505476	misfolded protein binding
GO:0034655	0.006943971610563111	nucleobase-containing compound catabolic process
GO:0043335	0.00719424460431706	protein unfolding
GO:0046483	0.007327722685779042	heterocycle metabolic process
GO:0035649	0.008097165991902366	Nrd1 complex

Set171a:
YAP6 MET31 
2
GO:0000988	0.0014804034334107972	protein binding transcription factor activity
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0001010	0.008566533409480154	sequence-specific DNA binding transcription factor recruiting transcription factor activity

Set171b:
MDM31 RPS14B EGD2 SOP4 
4
GO:0005854	0.006024096385541824	nascent polypeptide-associated complex

Set172a:
STP1 PHO2 GAT1 SUT1 
4
GO:0001071	6.020583084831739E-5	nucleic acid binding transcription factor activity
GO:0048518	2.0104118072084663E-4	positive regulation of biological process
GO:0048522	3.2655912895425713E-4	positive regulation of cellular process
GO:0009893	4.5765085988733206E-4	positive regulation of metabolic process
GO:0031325	5.56609914430763E-4	positive regulation of cellular metabolic process
GO:0051173	0.0017103808914118003	positive regulation of nitrogen compound metabolic process
GO:0010604	0.0019142550561718134	positive regulation of macromolecule metabolic process
GO:0009891	0.002519625238377181	positive regulation of biosynthetic process
GO:0031328	0.002790657755469802	positive regulation of cellular biosynthetic process
GO:0045935	0.003247105670396677	positive regulation of nucleobase-containing compound metabolic process
GO:0010628	0.0050883905597982095	positive regulation of gene expression
GO:0010557	0.00838050437132659	positive regulation of macromolecule biosynthetic process

Set172b:
GPI14 YJR011C 
2
GO:0042157	0.0054446460980044275	lipoprotein metabolic process
GO:0042158	0.008264462809917456	lipoprotein biosynthetic process

Set173a:
SWI4 GCR2 
2

Set173b:
PDC1 YPS3 YLR125W 
3
GO:0042430	0.005725190839695783	indole-containing compound metabolic process
GO:0019439	0.009433962264150551	aromatic compound catabolic process

Set174a:
DAL82 SUM1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set174b:
DAL4 DAL1 YDR042C 
3
GO:0043603	1.544333399519288E-4	cellular amide metabolic process
GO:0000255	3.6062026685894556E-4	allantoin metabolic process
GO:0006725	7.935985144339558E-4	cellular aromatic compound metabolic process
GO:0000256	0.0021039343572479994	allantoin catabolic process
GO:0043605	0.003155901535872003	cellular amide catabolic process
GO:0009112	0.008152173913043168	nucleobase metabolic process
GO:0050897	0.008333333333333401	cobalt ion binding

Set175a:
UME6 GCR2 
2
GO:0000988	0.0014804034334107972	protein binding transcription factor activity
GO:0034389	0.004184100418409662	lipid particle organization

Set175b:
MET3 TDH2 GNP1 SMT3 
4
GO:0031386	0.0070639969327868065	protein tag
GO:0071944	0.009353969292453596	cell periphery

Set176a:
STP1 MSN2 RDS1 SIP4 
4
GO:0001071	6.020583084831739E-5	nucleic acid binding transcription factor activity
GO:0048518	0.006217160724096565	positive regulation of biological process
GO:0043167	0.007617936484028601	ion binding
GO:0048522	0.008831828472544836	positive regulation of cellular process

Set176b:
TRM13 MDH2 
2

Set177a:
YAP7 HAP1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set177b:
PDR16 SOD1 ERG11 ERG11-A ADO1 COX15 
6
GO:0051091	0.008064516129032091	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0032451	0.008695652173911599	demethylase activity

Set178a:
CIN5 SKN7 YAP1 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0009628	0.0034995145490484252	response to abiotic stimulus

Set178b:
CYT2 TCB2 SRX1 
3

Set179a:
NRG1 SWI4 SWI6 RLM1 
4
GO:0007154	0.004142084381604722	cell communication
GO:0005667	0.005628517823639318	transcription factor complex
GO:0048518	0.006217160724096565	positive regulation of biological process
GO:0000988	0.008447845205531702	protein binding transcription factor activity
GO:0048522	0.008831828472544836	positive regulation of cellular process

Set179b:
IRC22 MNN1 CWP1 YKL096C-B 
4
GO:0044425	0.005552733281831514	membrane part

Set180a:
ADR1 PHO2 HAP2 MOT3 RTG3 GLN3 
6
GO:0048518	2.73947881644177E-6	positive regulation of biological process
GO:0048522	5.675202418751698E-6	positive regulation of cellular process
GO:0009893	9.384474617933568E-6	positive regulation of metabolic process
GO:0031325	1.2591907193990555E-5	positive regulation of cellular metabolic process
GO:0001071	2.888224294143498E-5	nucleic acid binding transcription factor activity
GO:0051173	6.76421821462701E-5	positive regulation of nitrogen compound metabolic process
GO:0010604	8.042075270943565E-5	positive regulation of macromolecule metabolic process
GO:0009891	1.2140738082091765E-4	positive regulation of biosynthetic process
GO:0031328	1.4155737295883322E-4	positive regulation of cellular biosynthetic process
GO:0045935	1.7728688514961086E-4	positive regulation of nucleobase-containing compound metabolic process
GO:0010628	3.4762408451008E-4	positive regulation of gene expression
GO:0010557	7.384931316661293E-4	positive regulation of macromolecule biosynthetic process
GO:0050789	0.0010985320947536645	regulation of biological process
GO:0031323	0.0013129300734310142	regulation of cellular metabolic process
GO:0050794	0.0016475372960281444	regulation of cellular process
GO:0051716	0.0016968463783931375	cellular response to stimulus
GO:0051254	0.0017019573741452268	positive regulation of RNA metabolic process
GO:0019222	0.0017315787300720689	regulation of metabolic process
GO:0080090	0.001884442490912388	regulation of primary metabolic process
GO:0065007	0.002058569125659108	biological regulation
GO:0001067	0.0025289094976635156	regulatory region nucleic acid binding
GO:0032774	0.0034022992056635627	RNA biosynthetic process
GO:0050896	0.0037000260635312913	response to stimulus
GO:0051171	0.0038131362710791396	regulation of nitrogen compound metabolic process
GO:0009889	0.004395450539561947	regulation of biosynthetic process
GO:0033993	0.005026300409117552	response to lipid
GO:0060255	0.005673982302805024	regulation of macromolecule metabolic process
GO:0031326	0.0060816078543365	regulation of cellular biosynthetic process
GO:0003676	0.0065182371316626075	nucleic acid binding
GO:0019216	0.007680921390885876	regulation of lipid metabolic process
GO:0019219	0.00965476391188814	regulation of nucleobase-containing compound metabolic process
GO:0045893	0.00981333180792696	positive regulation of transcription, DNA-dependent

Set180b:
DPS1 BPT1 
2

Set181a:
YAP7 ABF1 
2

Set181b:
RPN4 RPN10 AIM46 VID27 RRG9 
5
GO:0044265	0.0063254908695433345	cellular macromolecule catabolic process
GO:0009057	0.00756651100261806	macromolecule catabolic process

Set182a:
RPN4 AFT2 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set182b:
YJR005C-A POL31 BMH1 PIM1 
4
GO:0051219	0.005494505494505476	phosphoprotein binding
GO:0042575	0.00606059365571654	DNA polymerase complex
GO:0051439	0.008196721311475488	regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051716	0.008384515738521489	cellular response to stimulus
GO:0070361	0.00925925925925929	mitochondrial light strand promoter anti-sense binding

Set183a:
SWI5 ABF1 
2

Set183b:
ENO1 UTP5 PUP2 NCB2 
4
GO:0019773	0.008076697928220727	proteasome core complex, alpha-subunit complex
GO:0032991	0.009594114428454424	macromolecular complex

Set184a:
PHO2 MCM1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0051098	0.008708236010966378	regulation of binding
GO:0051099	0.008875700626444542	positive regulation of binding

Set184b:
SIM1 HSP150 YJL160C GPA1 
4
GO:0005576	1.0654814081670789E-4	extracellular region
GO:0030312	1.683603563742015E-4	external encapsulating structure
GO:0071944	3.5411627246733854E-4	cell periphery
GO:0030808	0.0035211267605635955	regulation of nucleotide biosynthetic process
GO:0005834	0.004048582995951182	heterotrimeric G-protein complex
GO:0031234	0.004056795131844034	extrinsic to internal side of plasma membrane
GO:0009975	0.004347826086957027	cyclase activity
GO:0005199	0.004516711833784948	structural constituent of cell wall
GO:0005102	0.005494505494505476	receptor binding
GO:0032403	0.005494505494505476	protein complex binding
GO:0030810	0.006493506493506457	positive regulation of nucleotide biosynthetic process
GO:0045981	0.008658008658008169	positive regulation of nucleotide metabolic process

Set185a:
RLM1 SOK2 SUT1 
3

Set185b:
RHO3 RCK1 POG1 RPI1 
4
GO:0023052	9.076890244909972E-4	signaling
GO:0007154	0.004142084381604722	cell communication
GO:0045921	0.006896551724137712	positive regulation of exocytosis

Set186a:
HSF1 ABF1 
2
GO:0030474	0.004608294930875325	spindle pole body duplication

Set186b:
RPN4 HSP10 YOR020W-A FES1 STI1 
5
GO:0060590	0.005126452494873476	ATPase regulator activity

Set187a:
FHL1 UME6 
2
GO:0034389	0.004184100418409662	lipid particle organization
GO:0032545	0.006079027355622685	CURI complex
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set187b:
BDF1 RPS26B YER130C GDS1 MSC6 
5
GO:0009301	0.004672897196261788	snRNA transcription

Set188a:
ADR1 UME6 
2
GO:0000988	0.0014804034334107972	protein binding transcription factor activity
GO:0044255	0.003661258837925632	cellular lipid metabolic process
GO:0006629	0.006809315521930216	lipid metabolic process
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0034389	0.008368200836818863	lipid particle organization

Set188b:
PPT2 ATP7 PUT3 PXA1 
4
GO:0045265	0.00378071833648453	proton-transporting ATP synthase, stator stalk
GO:0033240	0.0098522167487688	positive regulation of cellular amine metabolic process

Set189a:
FKH1 MSN4 MET4 NDD1 
4
GO:0048518	2.0104118072084663E-4	positive regulation of biological process
GO:0048522	3.2655912895425713E-4	positive regulation of cellular process
GO:0009893	4.5765085988733206E-4	positive regulation of metabolic process
GO:0031325	5.56609914430763E-4	positive regulation of cellular metabolic process
GO:0000117	6.13833544802931E-4	regulation of transcription involved in G2/M-phase of mitotic cell cycle
GO:0051173	0.0017103808914118003	positive regulation of nitrogen compound metabolic process
GO:0010604	0.0019142550561718134	positive regulation of macromolecule metabolic process
GO:0009891	0.002519625238377181	positive regulation of biosynthetic process
GO:0001071	0.0025913081073285975	nucleic acid binding transcription factor activity
GO:0031328	0.002790657755469802	positive regulation of cellular biosynthetic process
GO:0045935	0.003247105670396677	positive regulation of nucleobase-containing compound metabolic process
GO:0090282	0.00423634336677817	positive regulation of transcription involved in G2/M-phase of mitotic cell cycle
GO:0010628	0.0050883905597982095	positive regulation of gene expression
GO:0010557	0.00838050437132659	positive regulation of macromolecule biosynthetic process
GO:0000988	0.008447845205531702	protein binding transcription factor activity

Set189b:
GSH1 LSB6 
2
GO:0043043	0.003944773175541578	peptide biosynthetic process

Set190a:
CIN5 SPT2 
2

Set190b:
YAL037C-A YAL037W SUN4 
3

Set191a:
MSN2 SOK2 FKH2 
3
GO:0001071	6.929813999683202E-4	nucleic acid binding transcription factor activity
GO:0016049	0.0022220175034543205	cell growth
GO:0040007	0.004529765547119604	growth

Set191b:
YAP6 CLN1 
2

Set192a:
SWI4 SWI6 ASH1 MSN4 
4
GO:0048518	2.0104118072084663E-4	positive regulation of biological process
GO:0048522	3.2655912895425713E-4	positive regulation of cellular process
GO:0009893	4.5765085988733206E-4	positive regulation of metabolic process
GO:0031325	5.56609914430763E-4	positive regulation of cellular metabolic process
GO:0051173	0.0017103808914118003	positive regulation of nitrogen compound metabolic process
GO:0010604	0.0019142550561718134	positive regulation of macromolecule metabolic process
GO:0009891	0.002519625238377181	positive regulation of biosynthetic process
GO:0001071	0.0025913081073285975	nucleic acid binding transcription factor activity
GO:0031328	0.002790657755469802	positive regulation of cellular biosynthetic process
GO:0045935	0.003247105670396677	positive regulation of nucleobase-containing compound metabolic process
GO:0010628	0.0050883905597982095	positive regulation of gene expression
GO:0000082	0.00630252100840354	G1/S transition of mitotic cell cycle
GO:0045596	0.006849315068493371	negative regulation of cell differentiation
GO:0010557	0.00838050437132659	positive regulation of macromolecule biosynthetic process

Set192b:
YOL114C SKM1 
2

Set193a:
SWI5 MSN2 MCM1 
3

Set193b:
PIL1 YGP1 
2
GO:0032126	0.007518796992481911	eisosome

Set194a:
DIG1 INO2 
2

Set194b:
STB3 STB3-A 
2

Set195a:
STP1 DAL82 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set195b:
REC104 LIN1 
2

Set196a:
STE12 HAC1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0000003	0.009381626409405661	reproduction

Set196b:
SIL1 GAS5 
2

Set197a:
YAP7 STE12 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set197b:
KTR2 WSC3 
2

Set198a:
HSF1 STE12 
2
GO:0030474	0.004608294930875325	spindle pole body duplication
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set198b:
CPR6 YDL180W 
2

Set199a:
IME1 RAP1 
2

Set199b:
MUP3 CBP2 
2
GO:0072348	0.008163265306123324	sulfur compound transport

Set200a:
UME6 GTS1 
2
GO:0045017	8.058017727639538E-4	glycerolipid biosynthetic process
GO:0019637	0.0010752657584745687	organophosphate metabolic process
GO:0000988	0.0014804034334107972	protein binding transcription factor activity
GO:0048511	0.0017683465959339032	rhythmic process
GO:0008654	0.0019415985572312402	phospholipid biosynthetic process
GO:0044255	0.003661258837925632	cellular lipid metabolic process
GO:0034389	0.004184100418409662	lipid particle organization
GO:0006629	0.006809315521930216	lipid metabolic process
GO:0008610	0.009269356597604242	lipid biosynthetic process

Set200b:
YPK9 SNF2 
2

Set201a:
UME6 PUT3 
2
GO:0034389	0.004184100418409662	lipid particle organization
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set201b:
KIP1 PRX1 
2
GO:0006276	0.003990021954094283	plasmid maintenance

Set202a:
RPN4 GTS1 
2
GO:0048511	0.0017683465959339032	rhythmic process
GO:0031329	0.004379054680260413	regulation of cellular catabolic process
GO:0009894	0.004749599092979486	regulation of catabolic process
GO:0048583	0.007084194084749055	regulation of response to stimulus

Set202b:
CHD1 YER163C 
2
GO:0001173	0.004629629629629636	DNA-dependent transcriptional start site selection

Set203a:
HAP4 FKH2 
2
GO:0000988	0.0014804034334107972	protein binding transcription factor activity
GO:0005667	0.005628517823639318	transcription factor complex
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set203b:
KGD2 NUM1 
2
GO:0045252	0.004042442576846418	oxoglutarate dehydrogenase complex

Set204a:
PHO4 FKH2 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set204b:
PBY1 PHO5 
2
GO:0042597	0.005529944496119855	periplasmic space
GO:0035770	0.006097560975608535	ribonucleoprotein granule

Set205a:
HSF1 RAP1 
2
GO:0030474	0.004608294930875325	spindle pole body duplication
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set205b:
HSP12 MDJ1 
2
GO:0022610	0.0035351282833773565	biological adhesion
GO:0007155	0.003990021954094283	cell adhesion
GO:0009408	0.008255933952527736	response to heat

Set206a:
ABF1 CHA4 
2

Set206b:
RPC25 LTV1 
2

Set207a:
GAL4 GAL80 
2
GO:0044262	0.007859271080281276	cellular carbohydrate metabolic process
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set207b:
GAL1 GAL10 
2
GO:0044262	0.007859271080281276	cellular carbohydrate metabolic process
GO:0019388	0.009999999999999995	galactose catabolic process

Set208a:
MET4 XBP1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set208b:
SAM1 YLR179C 
2

Set209a:
HAP5 MCM1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set209b:
GYP8 STE2 
2
GO:0005549	0.0014925373134327406	odorant binding
GO:0023052	0.00388879760256425	signaling

Set210a:
MBP1 ARR1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set210b:
POL2 YIF1 
2
GO:0042575	0.004042442576846418	DNA polymerase complex

Set211a:
ABF1 SUM1 
2
GO:0016458	8.67396076977019E-4	gene silencing
GO:0003688	0.004691898654988847	DNA replication origin binding
GO:0071897	0.005533928707731427	DNA biosynthetic process
GO:0006260	0.005533928707731427	DNA replication

Set211b:
SPR3 PMT2 
2
GO:0031501	0.002022244691608034	mannosyltransferase complex
GO:0031502	0.003333333333333215	dolichyl-phosphate-mannose-protein mannosyltransferase complex
GO:0042763	0.009208056069478677	intracellular immature spore

Set212a:
ABF1 BAS1 
2

Set212b:
SIZ1 ADE8 
2

Set213a:
ABF1 XBP1 
2

Set213b:
OCA5 WSC4 
2
GO:0023052	0.00388879760256425	signaling

Set214a:
SWI5 ADR1 
2

Set214b:
YDL119C CYK3 
2
GO:0070938	0.007369852091871375	contractile ring

Set215a:
RME1 BAS1 
2
GO:0022414	0.006267458510370168	reproductive process
GO:0048610	0.007986025950098693	cellular process involved in reproduction
GO:0000003	0.009381626409405661	reproduction

Set215b:
ADE5,7 MTO1 
2
GO:0000959	0.0033898305084744005	mitochondrial RNA metabolic process
GO:0000963	0.00787401574803151	mitochondrial RNA processing

Set216a:
CBF1 ASH1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity
GO:0090153	0.008264462809916032	regulation of sphingolipid biosynthetic process

Set216b:
PST1 CDC34 
2
GO:0000151	0.008088978766430744	ubiquitin ligase complex

Set217a:
DAL82 SUT1 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set217b:
ACA1 SPO73 
2

Set218a:
CST6 DAL82 
2
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set218b:
DOS2 OCA6 
2

Set219a:
REB1 LEU3 
2
GO:2000284	0.0061349693251533475	positive regulation of cellular amino acid biosynthetic process
GO:2000282	0.007246376811594155	regulation of cellular amino acid biosynthetic process
GO:0033240	0.0098522167487688	positive regulation of cellular amine metabolic process

Set219b:
FSF1 YTM1 
2
GO:0070545	0.0035842293906811636	PeBoW complex

Set220a:
SPT23 REB1 
2

Set220b:
snR37 NIC96 
2
GO:0055125	0.007319286218371828	Nic96 complex
GO:0046930	0.008421052631579308	pore complex

Set221a:
REB1 SNT2 
2

Set221b:
SUP45 ADH5 
2
GO:0018444	0.0015060240963856216	translation release factor complex

Set222a:
HSF1 SKN7 
2
GO:0023052	0.00388879760256425	signaling
GO:0030474	0.004608294930875325	spindle pole body duplication
GO:0001071	0.007902787884486728	nucleic acid binding transcription factor activity

Set222b:
YGR210C ZPR1 
2

Set223a:
RCS1 ZAP1 
2

Set223b:
LST4 ZRT3 
2
GO:0005215	0.006550706947418225	transporter activity

Set224a:
YAP7 SPT23 
2

Set224b:
PET18-A ASI1 
2

Set225a:
SPT23 CST6 
2

Set225b:
RLP7 DOM34 
2
GO:0043021	0.008941837895726123	ribonucleoprotein complex binding

Set226a:
CIN5 RIM101 
2
GO:0071454	0.008333333333333401	cellular response to anoxia

Set226b:
YTA12 YMR090W 
2
GO:0006465	0.0035211267605635955	signal peptide processing
GO:0005745	0.004032258064516497	m-AAA complex
GO:0006518	0.008760951188986421	peptide metabolic process



=============================
E. coli
=============================

Set1a:
narL fnr 
2

Set1b:
frdC dmsB fdnG fdnH fdnI narJ napG napF napD napC napB nirC nirB narG nrfA napH nrfF frdA frdB nrfE nrfB nrfC fumB frdD adhE cydC dsbE dmsC napA narH cysG dmsA nrfG dcuB caiF pflB ccmH ccmE focA ccmD ccmF ccmA ccmC ccmB narI narK nirD cydD nuoB nuoC nuoA nuoF nuoG nuoE nuoJ nuoK nuoH nuoI nuoN nrfD nuoL nuoM 
62
GO:0006091	1.3890309595568414E-18	generation of precursor metabolites and energy
GO:0055114	1.1153803005348359E-12	oxidation-reduction process
GO:0009055	1.581818058554696E-9	electron carrier activity
GO:0042126	3.917550898048976E-9	nitrate metabolic process
GO:0071841	8.913666760766184E-9	cellular component organization or biogenesis at cellular level
GO:0016020	9.891684513923126E-9	membrane
GO:0044425	1.4432982937327978E-8	membrane part
GO:0071941	3.328153632594104E-8	nitrogen cycle metabolic process
GO:0071944	1.2428287022586656E-7	cell periphery
GO:0051540	1.4606910418880832E-7	metal cluster binding
GO:0030964	1.7876346602398363E-7	NADH dehydrogenase complex
GO:0072521	3.5521200101477953E-7	purine-containing compound metabolic process
GO:0018130	9.341243374117265E-7	heterocycle biosynthetic process
GO:0016491	1.5617322382982838E-6	oxidoreductase activity
GO:0045272	3.7078235076010005E-6	plasma membrane respiratory chain complex I
GO:0071840	9.854207154887622E-6	cellular component organization or biogenesis
GO:0055086	1.2789012197095785E-5	nucleobase-containing small molecule metabolic process
GO:0048038	1.8378728004428645E-5	quinone binding
GO:0032991	2.0339314792346916E-5	macromolecular complex
GO:0070470	2.7157301907023603E-5	plasma membrane respiratory chain
GO:0070469	2.9296341840565293E-5	respiratory chain
GO:0022900	3.612922567258378E-5	electron transport chain
GO:0034621	4.624155613177165E-5	cellular macromolecular complex subunit organization
GO:0051184	7.047195656578501E-5	cofactor transporter activity
GO:0015980	7.523408626030445E-5	energy derivation by oxidation of organic compounds
GO:0051181	8.46833578792323E-5	cofactor transport
GO:0016661	1.480140389495264E-4	oxidoreductase activity, acting on other nitrogenous compounds as donors
GO:0016651	1.5701494957002805E-4	oxidoreductase activity, acting on NADH or NADPH
GO:0043412	1.6154603310566205E-4	macromolecule modification
GO:0071842	1.7117825929785095E-4	cellular component organization at cellular level
GO:0043167	3.2847460651964797E-4	ion binding
GO:0071844	3.442978971343797E-4	cellular component assembly at cellular level
GO:0044267	3.7488340240632843E-4	cellular protein metabolic process
GO:0034654	4.678842962364395E-4	nucleobase-containing compound biosynthetic process
GO:0043623	6.240898689411239E-4	cellular protein complex assembly
GO:0034622	6.601113704607758E-4	cellular macromolecular complex assembly
GO:0009061	6.622033275364048E-4	anaerobic respiration
GO:0044085	0.00233253891790478	cellular component biogenesis
GO:0022607	0.00233253891790478	cellular component assembly
GO:0044271	0.003056746351684993	cellular nitrogen compound biosynthetic process
GO:0048037	0.003064015421424699	cofactor binding
GO:0072522	0.004638066427639252	purine-containing compound biosynthetic process
GO:0017006	0.00476190476190475	protein-tetrapyrrole linkage
GO:0046148	0.005049938278532471	pigment biosynthetic process
GO:0044459	0.005956215176093405	plasma membrane part
GO:0009325	0.0065449677296732685	nitrate reductase complex
GO:0009326	0.0065449677296732685	formate dehydrogenase complex
GO:0009390	0.0065449677296732685	dimethyl sulfoxide reductase complex
GO:0051179	0.006596356484948211	localization
GO:0015985	0.0068390122556587375	energy coupled proton transport, down electrochemical gradient
GO:0046906	0.008407041338358212	tetrapyrrole binding
GO:0045271	0.009523809523809518	respiratory chain complex I
GO:0010181	0.009702047903861786	FMN binding

Set2a:
crp tdcA fnr tdcR lysR ihf 
6
GO:0048518	3.17730373585894E-5	positive regulation of biological process
GO:0009893	4.166885469487344E-5	positive regulation of metabolic process
GO:0050789	8.733439259513272E-4	regulation of biological process
GO:0065007	0.0010308417562803138	biological regulation
GO:0050794	0.0012012926745587822	regulation of cellular process
GO:0048522	0.0012818823683404448	positive regulation of cellular process
GO:0031325	0.001720860275246586	positive regulation of cellular metabolic process
GO:0019222	0.0017812412106296607	regulation of metabolic process
GO:0010604	0.0022079746850388426	positive regulation of macromolecule metabolic process
GO:0031323	0.0023855279504719834	regulation of cellular metabolic process
GO:0001071	0.00349447298880823	nucleic acid binding transcription factor activity
GO:0010628	0.0035994493343563323	positive regulation of gene expression
GO:0003676	0.003949327412825694	nucleic acid binding
GO:0051173	0.005770420649471464	positive regulation of nitrogen compound metabolic process
GO:0043170	0.006408745635154252	macromolecule metabolic process
GO:0080090	0.006826616083115876	regulation of primary metabolic process
GO:0044260	0.007635402546158497	cellular macromolecule metabolic process

Set2b:
tdcE tdcD tdcG tdcF tdcA tdcC tdcB 
7
GO:0009310	8.798951706430264E-7	amine catabolic process
GO:0016054	5.457802727451859E-5	organic acid catabolic process
GO:0006520	7.831618755794868E-5	cellular amino acid metabolic process
GO:0009063	8.141584645827164E-5	cellular amino acid catabolic process
GO:0044248	1.3025010422166626E-4	cellular catabolic process
GO:0006082	2.4111236877833746E-4	organic acid metabolic process
GO:0042180	2.4111236877833746E-4	cellular ketone metabolic process
GO:0009066	3.1496409849785624E-4	aspartate family amino acid metabolic process
GO:0009068	3.7526972511492564E-4	aspartate family amino acid catabolic process
GO:0009308	4.65864864249824E-4	amine metabolic process
GO:0044106	7.218570534050286E-4	cellular amine metabolic process
GO:0009056	7.805315172059334E-4	catabolic process
GO:0044282	0.0013168961326228271	small molecule catabolic process
GO:0006566	0.0013986013986014001	threonine metabolic process
GO:0046395	0.0018945984952736766	carboxylic acid catabolic process

Set3a:
ihf arcA 
2

Set3b:
glcE aceK nuoB aceB aceA pflB glcB nuoA nuoG gltA sodA focA glcF glcG sucA nuoC sucC sucB nuoF sucD nuoE nuoJ nuoK nuoH nuoI nuoN glcD nuoL nuoM 
29
GO:0030964	1.9282774894819376E-15	NADH dehydrogenase complex
GO:0055114	3.861406427376517E-14	oxidation-reduction process
GO:0070469	9.053038575408473E-14	respiratory chain
GO:0006091	9.61487379161072E-12	generation of precursor metabolites and energy
GO:0048037	3.6699691529972195E-10	cofactor binding
GO:0044459	8.931822949052804E-10	plasma membrane part
GO:0045272	6.058535143138922E-9	plasma membrane respiratory chain complex I
GO:0070470	5.2889374357672154E-8	plasma membrane respiratory chain
GO:0018130	5.378611551062727E-7	heterocycle biosynthetic process
GO:0034654	7.498789179884722E-7	nucleobase-containing compound biosynthetic process
GO:0016651	1.1297262106061528E-6	oxidoreductase activity, acting on NADH or NADPH
GO:0003824	1.1900985842914604E-6	catalytic activity
GO:0005887	9.48804815325573E-6	integral to plasma membrane
GO:0072522	1.6641041144218273E-5	purine-containing compound biosynthetic process
GO:0051186	2.013362314958891E-5	cofactor metabolic process
GO:0048038	5.833285146243289E-5	quinone binding
GO:0032991	8.542659760519611E-5	macromolecular complex
GO:0032787	9.139848826900534E-5	monocarboxylic acid metabolic process
GO:0009142	9.269558769002668E-5	nucleoside triphosphate biosynthetic process
GO:0072521	1.1813353832472344E-4	purine-containing compound metabolic process
GO:0051187	1.3844572461572978E-4	cofactor catabolic process
GO:0009201	1.7683465959328112E-4	ribonucleoside triphosphate biosynthetic process
GO:0009145	2.229654403567443E-4	purine nucleoside triphosphate biosynthetic process
GO:0009206	2.837741968176731E-4	purine ribonucleoside triphosphate biosynthetic process
GO:0016746	4.072149265015435E-4	transferase activity, transferring acyl groups
GO:0016491	4.6764974864285777E-4	oxidoreductase activity
GO:0006081	5.642906194434971E-4	cellular aldehyde metabolic process
GO:0006097	7.152639357821853E-4	glyoxylate cycle
GO:0015985	7.164655885456755E-4	energy coupled proton transport, down electrochemical gradient
GO:0009152	7.78072502210437E-4	purine ribonucleotide biosynthetic process
GO:0006754	8.321198252548355E-4	ATP biosynthetic process
GO:0042773	8.741258741258758E-4	ATP synthesis coupled electron transport
GO:0006164	0.0010196514645902936	purine nucleotide biosynthetic process
GO:0006818	0.0011225657784396153	hydrogen transport
GO:0046296	0.0011853959222380365	glycolate catabolic process
GO:0019154	0.0012254901960784348	glycolate dehydrogenase activity
GO:0009060	0.0012998537262745775	aerobic respiration
GO:0044271	0.001532138864676694	cellular nitrogen compound biosynthetic process
GO:0009260	0.0018936384342391156	ribonucleotide biosynthetic process
GO:0044248	0.002469352497573686	cellular catabolic process
GO:0009165	0.0049335863377608855	nucleotide biosynthetic process
GO:0006119	0.006092782413750003	oxidative phosphorylation
GO:0031226	0.006839309994085009	intrinsic to plasma membrane
GO:0015988	0.007786429365962115	energy coupled proton transport, against electrochemical gradient
GO:0034220	0.00880298805179008	ion transmembrane transport
GO:0006811	0.008860343378837291	ion transport
GO:0045271	0.009523809523809518	respiratory chain complex I
GO:0010181	0.009702047903861786	FMN binding

Set4a:
crp arcA fnr 
3
GO:0001071	0.004876185916344395	nucleic acid binding transcription factor activity
GO:0050896	0.007998558818231808	response to stimulus
GO:0048522	0.008180402887200563	positive regulation of cellular process
GO:0048518	0.008252246294016772	positive regulation of biological process
GO:0009893	0.009552234343364968	positive regulation of metabolic process
GO:0048519	0.009994990412687461	negative regulation of biological process
GO:0031325	0.009999398680376822	positive regulation of cellular metabolic process

Set4b:
b0725 pflB acnA sucA sucC sucB glpA sucD glpC glpB sdhA focA sdhC sdhB sdhD 
15
GO:0051186	1.8849963542330892E-8	cofactor metabolic process
GO:0055114	6.78698100969796E-7	oxidation-reduction process
GO:0051187	9.86605839128013E-7	cofactor catabolic process
GO:0009056	4.405530356007278E-6	catabolic process
GO:0006091	4.5572471319892194E-6	generation of precursor metabolites and energy
GO:0044248	3.9152860817119E-4	cellular catabolic process
GO:0045281	0.0023252864330105256	succinate dehydrogenase complex
GO:0045273	0.0023252864330105256	respiratory chain complex II
GO:0016627	0.0033429284216211605	oxidoreductase activity, acting on the CH-CH group of donors
GO:0003824	0.0034249101722867927	catalytic activity
GO:0005975	0.004217465565754586	carbohydrate metabolic process
GO:0006099	0.004854715499393122	tricarboxylic acid cycle
GO:0009060	0.006957599325728192	aerobic respiration
GO:0048037	0.007999418397374924	cofactor binding
GO:0019405	0.0082065871539556	alditol catabolic process

Set5a:
lrp ihf 
2

Set5b:
yeiL ilvD fimH ilvL ilvg_1 ompC ilvM fimA ompF fimC fimD fimF fimG ilvE fimI ilvg_2 ilvA 
17
GO:0042995	2.955883333437908E-7	cell projection
GO:0007155	1.249306198238839E-6	cell adhesion
GO:0022610	8.527145904326135E-6	biological adhesion
GO:0009081	2.180520681908238E-4	branched chain family amino acid metabolic process
GO:0044283	5.430079784040772E-4	small molecule biosynthetic process
GO:0016053	7.100912966485025E-4	organic acid biosynthetic process
GO:0030313	0.001408796105461485	cell envelope
GO:0006520	0.001978789005630832	cellular amino acid metabolic process
GO:0022803	0.0020202020202020362	passive transmembrane transporter activity
GO:0019867	0.0023059827562315455	outer membrane
GO:0009082	0.0038903625110521993	branched chain family amino acid biosynthetic process
GO:0006082	0.004753872226211701	organic acid metabolic process
GO:0042180	0.004753872226211701	cellular ketone metabolic process
GO:0046930	0.0051755452074996235	pore complex
GO:0044271	0.005396777557738892	cellular nitrogen compound biosynthetic process
GO:0009058	0.006881017068016079	biosynthetic process
GO:0044462	0.007157752948599116	external encapsulating structure part
GO:0009308	0.00810604863794694	amine metabolic process
GO:0030312	0.008256227373284988	external encapsulating structure

Set6a:
fhlA ihf modE 
3

Set6b:
hycD hycE hycF hycG hycA hycB hycC hycH 
8
GO:0009375	3.854264838164111E-10	ferredoxin hydrogenase complex
GO:0032991	1.4180343368238904E-4	macromolecular complex
GO:0051540	3.7074509347302464E-4	metal cluster binding
GO:0044424	0.004157609748849111	intracellular part

Set7a:
soxS rob marA 
3
GO:0001071	0.004876185916344395	nucleic acid binding transcription factor activity

Set7b:
marA marB nfo zwf fumC marR sodA 
7
GO:0050896	3.3922373989027875E-4	response to stimulus
GO:0042221	0.0026902557919511213	response to chemical stimulus

Set8a:
crp gutR gutM 
3

Set8b:
srlB srlA srlE srlD gutQ srlR gutM 
7
GO:0009401	0.0020797882397428926	phosphoenolpyruvate-dependent sugar phosphotransferase system
GO:0046400	0.009803921568627428	keto-3-deoxy-D-manno-octulosonic acid metabolic process

Set9a:
fis crp 
2

Set9b:
hupA aldB hupB guaB guaA mtlR acnB lpdA sdhC proP sucA sucC sucB sucD b0725 sdhA mtlA sdhB sdhD mtlD 
20
GO:0051186	1.198139022251313E-7	cofactor metabolic process
GO:0051187	9.86605839128013E-7	cofactor catabolic process
GO:0009060	0.0011132158921165326	aerobic respiration
GO:0044248	0.0018131642225209343	cellular catabolic process
GO:0055114	0.002233882005611911	oxidation-reduction process
GO:0009126	0.0022988505747126415	purine nucleoside monophosphate metabolic process
GO:0045281	0.0023252864330105256	succinate dehydrogenase complex
GO:0045273	0.0023252864330105256	respiratory chain complex II
GO:0009167	0.0024630541871921248	purine ribonucleoside monophosphate metabolic process
GO:0006091	0.0025973029847457846	generation of precursor metabolites and energy
GO:0016627	0.0033429284216211605	oxidoreductase activity, acting on the CH-CH group of donors
GO:0006099	0.004854715499393122	tricarboxylic acid cycle
GO:0016874	0.008653864376936132	ligase activity
GO:0005515	0.009860886731731298	protein binding

Set10a:
deoR cytR crp 
3
GO:0048519	1.9001882913854495E-4	negative regulation of biological process
GO:0048523	2.2205730247123345E-4	negative regulation of cellular process
GO:0009892	2.84044797922406E-4	negative regulation of metabolic process
GO:0031324	3.674479771021995E-4	negative regulation of cellular metabolic process
GO:0051172	0.0015683111529327964	negative regulation of nitrogen compound metabolic process
GO:0009890	0.003392130257802081	negative regulation of biosynthetic process
GO:0031327	0.0034698126301181322	negative regulation of cellular biosynthetic process
GO:0045934	0.004185680566482822	negative regulation of nucleobase-containing compound metabolic process
GO:0001071	0.004876185916344395	nucleic acid binding transcription factor activity
GO:0010605	0.005835380835380669	negative regulation of macromolecule metabolic process
GO:2000113	0.009608785175016992	negative regulation of cellular macromolecule biosynthetic process
GO:0010558	0.009608785175016992	negative regulation of macromolecule biosynthetic process

Set10b:
nupG tsx deoA deoB deoC deoD 
6
GO:0015931	2.020202020202025E-4	nucleobase-containing compound transport
GO:0055086	7.921984198852672E-4	nucleobase-containing small molecule metabolic process
GO:0016757	8.503401360544278E-4	transferase activity, transferring glycosyl groups
GO:0015932	8.865248226950288E-4	nucleobase-containing compound transmembrane transporter activity
GO:0051716	0.005466785669396876	cellular response to stimulus
GO:0043094	0.0075187969924814975	cellular metabolic compound salvage
GO:0046483	0.008439213127326383	heterocycle metabolic process

Set11a:
caiF crp ihf 
3

Set11b:
caiT caiE caiD caiC caiB caiA 
6
GO:0006577	1.0639101464048194E-8	betaine metabolic process
GO:0009437	4.405092286683309E-7	carnitine metabolic process
GO:0006520	7.831618755794868E-5	cellular amino acid metabolic process
GO:0006082	2.4111236877833746E-4	organic acid metabolic process
GO:0042180	2.4111236877833746E-4	cellular ketone metabolic process
GO:0009308	4.65864864249824E-4	amine metabolic process
GO:0044106	7.218570534050286E-4	cellular amine metabolic process

Set12a:
araC crp 
2

Set12b:
arah_1 araB araC araA araF araG araD araE araJ arah_2 
10
GO:0019637	1.4650396052277523E-4	organophosphate metabolic process
GO:0009056	7.805315172059334E-4	catabolic process
GO:0019321	0.004996593231887357	pentose metabolic process
GO:0051167	0.008791208791208786	xylulose 5-phosphate metabolic process

Set13a:
crp yiaJ 
2
GO:0048519	0.003458342690321145	negative regulation of biological process
GO:0048523	0.0038450975006859216	negative regulation of cellular process
GO:0009892	0.00452976704055184	negative regulation of metabolic process
GO:0031324	0.0053763440860209585	negative regulation of cellular metabolic process

Set13b:
yiaQ yiaP yiaS yiaR yiaK yiaM yiaL yiaO yiaN 
9
GO:0055085	0.007929236561110635	transmembrane transport

Set14a:
arcA appY 
2
GO:0048522	0.002818458137606834	positive regulation of cellular process
GO:0048518	0.0028445242907403287	positive regulation of biological process
GO:0009893	0.0033002588438306173	positive regulation of metabolic process
GO:0031325	0.0034570411794607836	positive regulation of cellular metabolic process
GO:0007154	0.004255319148935838	cell communication
GO:0051173	0.007972892166633187	positive regulation of nitrogen compound metabolic process

Set14b:
hyaB hyaC hyaA hyaF hyaD hyaE appC appB appA 
9
GO:0070069	0.0014423076923076618	cytochrome complex
GO:0016695	0.0021621621621621514	oxidoreductase activity, acting on hydrogen as donor
GO:0016679	0.0021621621621621514	oxidoreductase activity, acting on diphenols and related substances as donors
GO:0016730	0.0021621621621621514	oxidoreductase activity, acting on iron-sulfur proteins as donors
GO:0019646	0.0038461538461538503	aerobic electron transport chain
GO:0006793	0.006606244060300372	phosphorus metabolic process

Set15a:
fhlA ihf fnr 
3

Set15b:
hypE hypD hypA hypC hypB 
5
GO:0051604	8.246103303883377E-7	protein maturation
GO:0019538	9.090634146905581E-7	protein metabolic process
GO:0043412	0.004769096512215654	macromolecule modification
GO:0043170	0.006408745635154252	macromolecule metabolic process
GO:0031234	0.00826446280991744	extrinsic to internal side of plasma membrane
GO:0044267	0.00849243739151974	cellular protein metabolic process
GO:0016151	0.00853485064011383	nickel cation binding
GO:0019898	0.009433962264151104	extrinsic to membrane

Set16a:
crp nagC 
2

Set16b:
manX manY manZ nagD nagE nagB nagC nagA 
8
GO:0008982	1.7721070352649394E-4	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
GO:0006054	3.9123630672926795E-4	N-acetylneuraminate metabolic process
GO:0006040	0.0015015015015015039	amino sugar metabolic process
GO:0046348	0.004329004329004323	amino sugar catabolic process
GO:0009401	0.008111174134997278	phosphoenolpyruvate-dependent sugar phosphotransferase system
GO:0015761	0.008333333333333312	mannose transport
GO:0015578	0.008333333333333312	mannose transmembrane transporter activity
GO:0005975	0.009018816680311757	carbohydrate metabolic process

Set17a:
malT crp 
2
GO:0007154	0.004255319148935838	cell communication

Set17b:
lamB malS malM malK malF malG malE 
7
GO:0042946	6.233131587641023E-6	glucoside transport
GO:0043190	1.465376706852978E-5	ATP-binding cassette (ABC) transporter complex
GO:0015774	3.6578640632735636E-5	polysaccharide transport
GO:0033036	4.862850648285528E-5	macromolecule localization
GO:0015772	1.2515472108868734E-4	oligosaccharide transport
GO:0042947	3.952569169960448E-4	glucoside transmembrane transporter activity
GO:0044270	0.0011820330969266703	cellular nitrogen compound catabolic process
GO:0016787	0.0013794396557834051	hydrolase activity
GO:0051234	0.0020216057380283976	establishment of localization
GO:0051179	0.002541757972736369	localization
GO:0015157	0.002736726874657923	oligosaccharide transmembrane transporter activity
GO:0034655	0.0029066366704161963	nucleobase-containing compound catabolic process
GO:0015422	0.0034965034965034974	oligosaccharide-transporting ATPase activity
GO:0005215	0.003853232372242969	transporter activity
GO:0055085	0.004422710129714908	transmembrane transport
GO:0055086	0.004892990240467929	nucleobase-containing small molecule metabolic process
GO:0072521	0.005062596638236201	purine-containing compound metabolic process
GO:0015154	0.005477131564088054	disaccharide transmembrane transporter activity
GO:0033037	0.007575757575757558	polysaccharide localization
GO:0046483	0.008439213127326383	heterocycle metabolic process
GO:0009056	0.008740783657098768	catabolic process
GO:0032991	0.00892641408226042	macromolecular complex

Set18a:
crp fucR 
2

Set18b:
fucA fucO fucK fucI fucU fucR fucP 
7
GO:0006004	1.2161751292186011E-5	fucose metabolic process
GO:0044262	2.7347886651521942E-5	cellular carbohydrate metabolic process
GO:0005975	2.3693626773902156E-4	carbohydrate metabolic process
GO:0006066	7.304585731235551E-4	alcohol metabolic process
GO:0044281	0.0054595459117043246	small molecule metabolic process
GO:0005996	0.006318765624603002	monosaccharide metabolic process

Set19a:
rob crp galR 
3
GO:0001071	0.004876185916344395	nucleic acid binding transcription factor activity

Set19b:
galT galE galM galK 
4
GO:0006012	3.344481605351145E-4	galactose metabolic process
GO:0019388	7.326007326007312E-4	galactose catabolic process
GO:0044262	0.0026626385724160375	cellular carbohydrate metabolic process
GO:0009056	0.008740783657098768	catabolic process
GO:0005975	0.009018816680311757	carbohydrate metabolic process

Set20a:
rhasr crp rhaS 
3

Set20b:
rhaD rhaA rhaT rhaB 
4
GO:0019301	0.007142857142857133	rhamnose catabolic process
GO:0019299	0.007692307692307674	rhamnose metabolic process

Set21a:
rcsab rcsB 
2

Set21b:
rcsA b2060 wzb wcaB wcaA wza 
6
GO:0005976	1.1806822078179471E-5	polysaccharide metabolic process
GO:0044264	1.443345096595753E-5	cellular polysaccharide metabolic process
GO:0000271	1.8066187010031944E-5	polysaccharide biosynthetic process
GO:0033692	1.8066187010031944E-5	cellular polysaccharide biosynthetic process
GO:0016051	2.2112775762217757E-5	carbohydrate biosynthetic process
GO:0034637	2.469238730701487E-5	cellular carbohydrate biosynthetic process
GO:0045229	9.380863039399691E-5	external encapsulating structure organization
GO:0008610	0.003172558561137792	lipid biosynthetic process
GO:0044255	0.003730631021180896	cellular lipid metabolic process
GO:0043170	0.006408745635154252	macromolecule metabolic process
GO:0044260	0.007635402546158497	cellular macromolecule metabolic process
GO:0006629	0.007827812492152399	lipid metabolic process

Set22a:
csgD ompR 
2
GO:0060089	0.0018436254455425963	molecular transducer activity
GO:0023052	0.0020360805449509693	signaling
GO:0048522	0.002818458137606834	positive regulation of cellular process
GO:0048518	0.0028445242907403287	positive regulation of biological process
GO:0009893	0.0033002588438306173	positive regulation of metabolic process
GO:0031325	0.0034570411794607836	positive regulation of cellular metabolic process
GO:0007154	0.004255319148935838	cell communication
GO:0051173	0.007972892166633187	positive regulation of nitrogen compound metabolic process

Set22b:
csgG csgF csgE csgD csgB csgA 
6
GO:0022610	2.8067305589309307E-8	biological adhesion
GO:0051704	8.77995209606991E-8	multi-organism process
GO:0019867	2.1027116551278037E-4	outer membrane
GO:0071806	4.0241448692153334E-4	protein transmembrane transport
GO:0044462	6.573885935076313E-4	external encapsulating structure part
GO:0030312	7.671808143907152E-4	external encapsulating structure
GO:0031975	0.001026030218984964	envelope
GO:0015031	0.0020202020202020237	protein transport
GO:0045184	0.0020202020202020237	establishment of protein localization
GO:0007155	0.005537092912019024	cell adhesion
GO:0030313	0.0060392577234127725	cell envelope
GO:0042995	0.007031411762355153	cell projection

Set23a:
fruR crp 
2

Set23b:
crr mtlR pgk ptsI ptsH mtlA epd mtlD 
8
GO:0006793	4.0719417701613124E-4	phosphorus metabolic process
GO:0019197	8.815750808110286E-4	phosphoenolpyruvate-dependent sugar phosphotransferase complex
GO:0006818	0.0022582228767795403	hydrogen transport
GO:0009401	0.008111174134997278	phosphoenolpyruvate-dependent sugar phosphotransferase system
GO:0005402	0.00884173297966406	cation:sugar symporter activity

Set24a:
crp glpR 
2
GO:0048519	0.003458342690321145	negative regulation of biological process
GO:0048523	0.0038450975006859216	negative regulation of cellular process
GO:0009892	0.00452976704055184	negative regulation of metabolic process
GO:0031324	0.0053763440860209585	negative regulation of cellular metabolic process

Set24b:
glpT glpQ glpD glpF glpA glpC glpB glpK 
8
GO:0019400	5.170998009510495E-8	alditol metabolic process
GO:0019751	2.0327434311895982E-7	polyol metabolic process
GO:0044262	2.7347886651521942E-5	cellular carbohydrate metabolic process
GO:0019405	2.0811475919834993E-4	alditol catabolic process
GO:0005975	2.3693626773902156E-4	carbohydrate metabolic process
GO:0019637	2.53811368058046E-4	organophosphate metabolic process
GO:0046174	4.2679626203802877E-4	polyol catabolic process
GO:0015850	6.049606775559632E-4	organic alcohol transport
GO:0006066	7.304585731235551E-4	alcohol metabolic process
GO:0009331	8.815750808110286E-4	glycerol-3-phosphate dehydrogenase complex
GO:0015665	8.865248226950288E-4	alcohol transmembrane transporter activity
GO:0015793	0.001107419712070876	glycerol transport
GO:0016901	0.0012254901960784348	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor
GO:0006072	0.002836074872376637	glycerol-3-phosphate metabolic process
GO:0044281	0.0054595459117043246	small molecule metabolic process

Set25a:
lrp leuO 
2

Set25b:
leuL leuA leuB leuD leuC 
5
GO:0044283	1.0319608639353738E-4	small molecule biosynthetic process
GO:0016053	1.356915373431495E-4	organic acid biosynthetic process
GO:0009081	2.180520681908238E-4	branched chain family amino acid metabolic process
GO:0006520	3.950616572367491E-4	cellular amino acid metabolic process
GO:0006082	9.932390116838613E-4	organic acid metabolic process
GO:0042180	9.932390116838613E-4	cellular ketone metabolic process
GO:0044271	0.001128917754424943	cellular nitrogen compound biosynthetic process
GO:0009308	0.0017392288265326516	amine metabolic process
GO:0044106	0.002502437785137493	cellular amine metabolic process
GO:0009082	0.0038903625110521993	branched chain family amino acid biosynthetic process
GO:0003861	0.0095238095238095	3-isopropylmalate dehydratase activity

Set26a:
crp rbsR 
2

Set26b:
rbsA rbsC rbsB rbsK rbsD 
5
GO:0046483	0.002330670026191085	heterocycle metabolic process
GO:0019303	0.00854700854700853	D-ribose catabolic process
GO:0006014	0.008563899868247642	D-ribose metabolic process

Set27a:
pspF ihf 
2

Set27b:
pspE pspD pspC pspB pspA 
5
GO:0050896	3.025191949120908E-4	response to stimulus
GO:0009607	0.0037023324694557378	response to biotic stimulus
GO:0051704	0.009348104131808197	multi-organism process

Set28a:
lrp gcvA purR 
3
GO:0001071	0.004876185916344395	nucleic acid binding transcription factor activity

Set28b:
gcvP gcvH gcvT 
3
GO:0009069	0.0028571428571428532	serine family amino acid metabolic process
GO:0006520	0.00954068420335135	cellular amino acid metabolic process

Set29a:
uidR uxuR 
2

Set29b:
uidB uidR uidC uidA 
4

Set30a:
crp ompR 
2
GO:0048522	0.002818458137606834	positive regulation of cellular process
GO:0048518	0.0028445242907403287	positive regulation of biological process
GO:0009893	0.0033002588438306173	positive regulation of metabolic process
GO:0031325	0.0034570411794607836	positive regulation of cellular metabolic process
GO:0007154	0.004255319148935838	cell communication
GO:0051173	0.007972892166633187	positive regulation of nitrogen compound metabolic process

Set30b:
nmpC flhC flhD fadL 
4
GO:0009893	0.0033002588438306173	positive regulation of metabolic process
GO:0031325	0.0034570411794607836	positive regulation of cellular metabolic process
GO:0019867	0.007724301841948019	outer membrane
GO:0051173	0.007972892166633187	positive regulation of nitrogen compound metabolic process
GO:0048522	0.008180402887200563	positive regulation of cellular process

Set31a:
gntR crp 
2
GO:0048522	0.002818458137606834	positive regulation of cellular process
GO:0048518	0.0028445242907403287	positive regulation of biological process
GO:0009893	0.0033002588438306173	positive regulation of metabolic process
GO:0031325	0.0034570411794607836	positive regulation of cellular metabolic process
GO:0048519	0.003458342690321145	negative regulation of biological process
GO:0048523	0.0038450975006859216	negative regulation of cellular process
GO:0009892	0.00452976704055184	negative regulation of metabolic process
GO:0031324	0.0053763440860209585	negative regulation of cellular metabolic process
GO:0051173	0.007972892166633187	positive regulation of nitrogen compound metabolic process

Set31b:
gntK gntu_2 gntu_1 gntT 
4
GO:0019520	0.0012072434607645994	aldonic acid metabolic process
GO:0046176	0.0033222591362126255	aldonic acid catabolic process

Set32a:
crp galS 
2

Set32b:
mglA mglB mglC galS 
4

Set33a:
trpR tyrR 
2

Set33b:
mtr yaiA aroL aroM 
4
GO:0019438	1.1222085063404396E-4	aromatic compound biosynthetic process
GO:0006725	3.840245775729269E-4	cellular aromatic compound metabolic process
GO:0009072	7.541478129713464E-4	aromatic amino acid family metabolic process
GO:0009073	0.0024630541871921248	aromatic amino acid family biosynthetic process
GO:0043648	0.003912363067292677	dicarboxylic acid metabolic process

Set34a:
betI arcA 
2
GO:0048519	0.003458342690321145	negative regulation of biological process
GO:0048523	0.0038450975006859216	negative regulation of cellular process
GO:0009892	0.00452976704055184	negative regulation of metabolic process
GO:0031324	0.0053763440860209585	negative regulation of cellular metabolic process

Set34b:
betB betA betI betT 
4
GO:0042439	3.1620453374060553E-6	ethanolamine-containing compound metabolic process
GO:0006578	3.6937852063902836E-6	betaine biosynthetic process
GO:0006575	4.342162396873629E-6	cellular modified amino acid metabolic process
GO:0006576	4.342162396873629E-6	cellular biogenic amine metabolic process
GO:0006577	7.802007740301131E-6	betaine metabolic process
GO:0042398	4.210349037935256E-5	cellular modified amino acid biosynthetic process
GO:0044283	6.804491946573645E-4	small molecule biosynthetic process
GO:0016053	8.559004663182637E-4	organic acid biosynthetic process
GO:0050896	0.0015644564079735441	response to stimulus
GO:0006520	0.0019581316923905673	cellular amino acid metabolic process
GO:0006970	0.002718212020537619	response to osmotic stress
GO:0031455	0.003030303030303028	glycine betaine metabolic process
GO:0009628	0.0032730009577395737	response to abiotic stimulus
GO:0006082	0.004045988327005562	organic acid metabolic process
GO:0042180	0.004045988327005562	cellular ketone metabolic process
GO:0044271	0.004543205597075608	cellular nitrogen compound biosynthetic process
GO:0009308	0.006389775471391544	amine metabolic process
GO:0044106	0.008540928962316802	cellular amine metabolic process

Set35a:
cbl cysB 
2
GO:0006790	7.168458781361301E-4	sulfur compound metabolic process
GO:0006791	0.005464480874316705	sulfur utilization

Set35b:
tauB tauC tauA tauD 
4

Set36a:
lrp crp 
2

Set36b:
malT dadA dadX 
3
GO:0009078	8.163265306122488E-4	pyruvate family amino acid metabolic process
GO:0046416	0.002448979591836745	D-amino acid metabolic process
GO:0019480	0.009433962264151104	L-alanine oxidation to pyruvate via D-alanine

Set37a:
melR crp 
2

Set37b:
melB melR melA 
3

Set38a:
exuR uxuR 
2

Set38b:
uxuB uxuR uxuA 
3
GO:0006064	5.464480874317068E-4	glucuronate catabolic process
GO:0006063	7.843137254901914E-4	uronic acid metabolic process

Set39a:
lacI crp 
2

Set39b:
lacA lacZ lacY 
3
GO:0005984	0.0014423076923076644	disaccharide metabolic process
GO:0030246	0.0017670682730924387	carbohydrate binding
GO:0009311	0.002414486921529199	oligosaccharide metabolic process

Set40a:
crp malI 
2
GO:0048519	0.003458342690321145	negative regulation of biological process
GO:0048523	0.0038450975006859216	negative regulation of cellular process
GO:0009892	0.00452976704055184	negative regulation of metabolic process
GO:0031324	0.0053763440860209585	negative regulation of cellular metabolic process

Set40b:
malI malX malY 
3

Set41a:
narL torR 
2
GO:0060089	0.0018436254455425963	molecular transducer activity
GO:0023052	0.0020360805449509693	signaling
GO:0007154	0.004255319148935838	cell communication

Set41b:
torD torA torC 
3

Set42a:
ihf nr(i) 
2

Set42b:
glnQ glnH glnP 
3
GO:0071705	0.00281385281385276	nitrogen compound transport
GO:0015837	0.008357685563997784	amine transport

Set43a:
crp nr(i) 
2

Set43b:
glnA glnG glnL 
3
GO:0071941	5.365274996875355E-4	nitrogen cycle metabolic process
GO:0009399	0.002197802197802196	nitrogen fixation
GO:0060089	0.005388214843818607	molecular transducer activity
GO:0023052	0.005940432798731226	signaling
GO:0019740	0.008196721311475955	nitrogen utilization
GO:0032501	0.008196721311475955	multicellular organismal process

Set44a:
rcsab sdiA 
2

Set44b:
ftsA ftsQ ftsZ 
3
GO:0032153	2.4099486536340557E-7	cell division site
GO:0032155	2.4099486536340557E-7	cell division site part
GO:0000910	6.739498176965387E-7	cytokinesis
GO:0051301	6.739498176965387E-7	cell division
GO:0007049	6.739498176965387E-7	cell cycle
GO:0032506	5.52638850511177E-5	cytokinetic process
GO:0071840	0.0013153251419590053	cellular component organization or biogenesis
GO:0000917	0.003076923076923083	barrier septum assembly
GO:0032502	0.008196721311475955	developmental process
GO:0048869	0.009090909090909483	cellular developmental process

Set45a:
dnaA iciA 
2

Set45b:
dnaA recF dnaN 
3
GO:0006260	6.782419967444106E-5	DNA replication
GO:0071897	6.782419967444106E-5	DNA biosynthetic process
GO:0006259	5.877858108505535E-4	DNA metabolic process

Set46a:
arcA lctR 
2

Set46b:
lctD lctR lctP 
3

Set47a:
flhdc hns 
2

Set47b:
fliY fliA fliZ 
3
GO:0000988	3.0568971354116874E-4	protein binding transcription factor activity
GO:0001047	0.003506721215663378	core promoter binding

Set48a:
crp hns 
2

Set48b:
flhC hlyE flhD caiF 
4
GO:0048522	5.310229921379808E-4	positive regulation of cellular process
GO:0048518	5.428905455445307E-4	positive regulation of biological process
GO:0050789	0.00363391380683106	regulation of biological process
GO:0065007	0.004146274619704229	biological regulation
GO:0050794	0.004690761872086089	regulation of cellular process

Set49a:
dnaA fis 
2

Set49b:
nrdA nrdB guaB guaA 
4
GO:0034654	1.0897104094586459E-4	nucleobase-containing compound biosynthetic process
GO:0055086	7.921984198852672E-4	nucleobase-containing small molecule metabolic process
GO:0016725	0.0010810810810810737	oxidoreductase activity, acting on CH or CH2 groups
GO:0005971	0.0017631501616220604	ribonucleoside-diphosphate reductase complex
GO:0006260	0.0021477663230240274	DNA replication
GO:0071897	0.0021477663230240274	DNA biosynthetic process
GO:0009126	0.0022988505747126415	purine nucleoside monophosphate metabolic process
GO:0009167	0.0024630541871921248	purine ribonucleoside monophosphate metabolic process
GO:0044444	0.004528538925348509	cytoplasmic part
GO:0044271	0.004543205597075608	cellular nitrogen compound biosynthetic process
GO:0006259	0.007788161993769713	DNA metabolic process

Set50a:
rpoE cpxR 
2

Set50b:
ecfI htrA 
2

Set51a:
lrp hns 
2

Set51b:
stpA osmC 
2

Set52a:
fur fecI 
2

Set52b:
fecR fecI 
2
GO:0065008	0.002287805994051725	regulation of biological quality

Set53a:
crp fur 
2

Set53b:
cirA fur 
2
GO:0004872	0.00591715976331269	receptor activity
GO:0019725	0.006042296072506534	cellular homeostasis

Set54a:
crp dsdC 
2

Set54b:
dsdA dsdX 
2
GO:0051410	0.005780346820809282	detoxification of nitrogen compound

Set55a:
fadR arcA 
2
GO:0048522	0.002818458137606834	positive regulation of cellular process
GO:0048518	0.0028445242907403287	positive regulation of biological process
GO:0009893	0.0033002588438306173	positive regulation of metabolic process
GO:0031325	0.0034570411794607836	positive regulation of cellular metabolic process
GO:0048519	0.003458342690321145	negative regulation of biological process
GO:0048523	0.0038450975006859216	negative regulation of cellular process
GO:0009892	0.00452976704055184	negative regulation of metabolic process
GO:0031324	0.0053763440860209585	negative regulation of cellular metabolic process
GO:0051173	0.007972892166633187	positive regulation of nitrogen compound metabolic process
GO:0008289	0.00799999999999982	lipid binding

Set55b:
fadB fadA 
2
GO:0016042	2.0614306328591288E-4	lipid catabolic process
GO:0044255	3.840245775729269E-4	cellular lipid metabolic process
GO:0044242	4.2625745950553733E-4	cellular lipid catabolic process
GO:0034440	5.390835579514796E-4	lipid oxidation
GO:0006629	8.186815328837133E-4	lipid metabolic process

Set56a:
metJ metR 
2
GO:0006790	7.168458781361301E-4	sulfur compound metabolic process
GO:0044272	0.0016833127595106603	sulfur compound biosynthetic process

Set56b:
metR metA 
2
GO:0006790	7.168458781361301E-4	sulfur compound metabolic process
GO:0044272	0.0016833127595106603	sulfur compound biosynthetic process

Set57a:
crp dcuR 
2
GO:0007154	0.004255319148935838	cell communication

Set57b:
dctA fumB 
2

Set58a:
argR ihf 
2

Set58b:
carB carA 
2
GO:0072527	2.2445009726170225E-4	pyrimidine-containing compound metabolic process
GO:0005951	2.9385836027034354E-4	carbamoyl-phosphate synthase complex
GO:0006725	3.840245775729269E-4	cellular aromatic compound metabolic process
GO:0072528	9.66183574879222E-4	pyrimidine-containing compound biosynthetic process
GO:0016874	0.001098901098901132	ligase activity
GO:0006220	0.0015873015873015955	pyrimidine nucleotide metabolic process
GO:0009218	0.0024630541871921248	pyrimidine ribonucleotide metabolic process
GO:0009112	0.0031712473572938567	nucleobase metabolic process
GO:0046112	0.0073529411764706055	nucleobase biosynthetic process
GO:0009064	0.008163265306122483	glutamine family amino acid metabolic process
GO:0006221	0.008333333333333312	pyrimidine nucleotide biosynthetic process
GO:0009116	0.00900900900900902	nucleoside metabolic process

Set59a:
crp ebgR 
2
GO:0048519	0.003458342690321145	negative regulation of biological process
GO:0048523	0.0038450975006859216	negative regulation of cellular process
GO:0009892	0.00452976704055184	negative regulation of metabolic process
GO:0031324	0.0053763440860209585	negative regulation of cellular metabolic process

Set59b:
ebgA ebgC 
2

Set60a:
hns cadC 
2

Set60b:
cadA cadB 
2

Set61a:
gntR fruR 
2

Set61b:
eda edd 
2
GO:0009255	0.006451612903225771	Entner-Doudoroff pathway

Set62a:
rhasr rhaR 
2

Set62b:
rhaS rhaR 
2