# Electronic Supplementary Material (ESI) for New Journal of Chemistry # This journal is © The Royal Society of Chemistry and The Centre National de la Recherche Scientifique 2012 data_global _journal_name_full 'New J.Chem.' _journal_coden_cambridge 0440 #TrackingRef '- NEWNEWpublication_JBS61_H2O-NH3.cif' _audit_creation_date 12-07-18 _audit_creation_method CRYSTALS_ver_14.21 _oxford_structure_analysis_title 'jbs61b in P n m a' _chemical_name_systematic ? _chemical_melting_point ? #looking for refcif # Check this file using the IUCr facility at: # http://checkcif.iucr.org/ # The content below is held in the file 'script/refcif.dat'. This is a text # file which you may edit to reflect local conditions. # Items which need looking at are represented by a '?'. # Items for which there are choices are prefixed with 'choose from'. _publ_contact_letter ; Please consider this CIF submission for publication as a Short Format Paper in Acta Crystallographica E. ; _publ_contact_author_name 'Jean-Bernard Tomasino' _publ_contact_author_address ; ; _publ_contact_author_email jbtomasi@univ-lyon1.fr _publ_requested_category EO # choose from: FI FM FO CI CM CO AD _publ_section_title # Title of paper - generally just the systematic or trivial name ; ? ; # The loop structure below should contain the names and addresses of all # authors, in the required order of publication. Repeat as necessary. loop_ _publ_author_name _publ_author_address _publ_author_footnote # Author 1 # Author 2 'Jean-Bernard Tomasino' ; ? # Address for author 1 ; ; ? # Footnote for author 1 ; 'Guillaume Chastanet' ; ? # Address 2 ; ; ? # Footnote 2 ; 'Boris Le Guennic' '' '' 'Vincent Robert' '' '' G.Pilet '' '' _publ_section_abstract # Text of the abstract # (a) The Abstract must be self-contained and comprehensible # without the rest of the paper. This means no references # to atom names or to compound numbers; compounds must be # identified as the title compound, or by name or by some other # means such as derivatives of each other (e.g. "the # corresponding ketone"). # (b) The chemical formula of "the title compound" must be given. # (c) Any crystallographic molecular symmetry should be # mentioned, and also the presence of more than one molecule # in the asymmetric unit (i.e. anything other than Z'=1). ; ? ; _publ_section_related_literature # Not in version 2.3.1 ############################################################### # Essential references (e.g. to the origin of the material studied, related # structural studies, and to information supporting the reported structure) # should be cited in this section, with appropriate very brief explanatory # text, for example `The synthesis of the complex is described by Jones # (2001). The anhydrous complex has essentially the same coordination # geometry (Smith, 2003).' In addition, all references included in the # supplementary materials, but not elsewhere in the published article, # should be given here. The simple text `For related literature, see:...' # may be used, but further details should be provided in the Comment # section, which forms part of the supplementary material. ############################################################### ; ? ; _publ_section_comment # Text of the paper # Note that atoms are referenced as N2, not N(2) or N~2~ # If text containing () occur within (), the outer ones should be [] # Figures should be referenced as Fig. ; ? ; _publ_section_acknowledgements # Acknowledgments ; ? ; _publ_section_figure_captions # Captions to figures - Start each caption on a new line after a blank line ; Fig. 1. The title compound with displacement ellipsoids drawn at the 50% probability level. H atoms are shown as spheres of arbitary radius. ; _publ_section_exptl_refinement # Some potentially useful phrases are donated by Bill Clegg: ; In the absence of significant anomalous scattering, Friedel pairs were merged. The absolute configuration was arbitrarily assigned. The relatively large ratio of minimum to maximum corrections applied in the multiscan process (1:nnn) reflect changes in the illuminated volume of the crystal. Changes in illuminated volume were kept to a minimum, and were taken into account (G\"orbitz, 1999) by the multi-scan inter-frame scaling (DENZO/SCALEPACK, Otwinowski & Minor, 1997). G\"orbitz, C. H. (1999). Acta Cryst. B55, 1090-1098. The H atoms were all located in a difference map, but those attached to carbon atoms were repositioned geometrically. The H atoms were initially refined with soft restraints on the bond lengths and angles to regularise their geometry (C---H in the range 0.93--0.98, N---H in the range 0.86--0.89 N---H to 0.86 O---H = 0.82 \%A) and U~iso~(H) (in the range 1.2-1.5 times U~eq~ of the parent atom), after which the positions were refined with riding constraints (Cooper et al, 2010). Cooper, R. I., Thompson, A. L. & Watkin, D. J. (2010). J. Appl. Cryst. 43, 1100-1107. ; _publ_section_exptl_prep # Brief details or a reference. Include solvent if known ; ? ; # Hand-made tables can be put in the cif. The number of columns # is set in the loop header. # The contants of each column can either be a piece of text # without any spaces (eg a number) or other text enclosed in " " # Remove the leading # in the following example #geom_extra_table_head_A #; #Table 2. #Molecular parameters deviating most from MOGUL averages #; # #loop_ #_geom_extra_tableA_col_1 #_geom_extra_tableA_col_2 #_geom_extra_tableA_col_3 #_geom_extra_tableA_col_4 # #Parameter "Observed Value" "MOGUL Value" "MOGUL e.s.d" #N5-C6-C4 129 124 "7 (\%)" #C3-O10-C2 105 109 "2 (\%)" #C6-O7 1.25 1.22 ".02 (\%A)" # data_1 _database_code_depnum_ccdc_archive 'CCDC 862144' #TrackingRef '- NEWNEWpublication_JBS61_H2O-NH3.cif' _exptl_special_details ; The crystal was placed in the cold stream of an Oxford Cryosystems open-flow nitrogen cryostat (Cosier & Glazer, 1986) with a nominal stability of 0.1K. Cosier, J. & Glazer, A.M., 1986. J. Appl. Cryst. 105-107. ; _refine_special_details ; ? ; #--------------------------------------------------------------- # _oxford_ data items, April 2010: # There is some uncertainty about the correct way of forming local data # names, e.g. # _atom_site_special_shape_oxford # or # _oxford_atom_site_special_shape # see: # http://www.iucr.org/resources/cif/spec/version1.1/semantics#namespace # A reserved prefix, e.g. foo, must be used in the following way # " If the data file contains items defined in a DDL1 dictionary, the # local data names assigned under the reserved prefix must contain it as # their first component, e.g. _foo_atom_site_my_item. " # However, this seems to say the opposite: # http://www.iucr.org/__data/iucr/cif/standard/cifstd8.html # According to advice from the IUCr, CRYSTALS is correct #--------------------------------------------------------------- # End of 'script/refcif.dat' #end of refcif _cell_length_a 6.3808(3) _cell_length_b 7.4452(3) _cell_length_c 12.7044(5) _cell_angle_alpha 90.0 _cell_angle_beta 90.0 _cell_angle_gamma 90.0 _cell_volume 603.53(6) _symmetry_cell_setting Orthorhombic _symmetry_space_group_name_H-M 'P n m a ' _symmetry_space_group_name_Hall '-P 2ac 2n' loop_ _symmetry_equiv_pos_as_xyz x,y,z -x,-y,-z -x+1/2,y+1/2,z+1/2 x+1/2,-y+1/2,-z+1/2 x,-y+1/2,z -x,y+1/2,-z -x+1/2,-y,z+1/2 x+1/2,y,-z+1/2 loop_ _atom_type_symbol _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_Cromer_Mann_a1 _atom_type_scat_Cromer_Mann_b1 _atom_type_scat_Cromer_Mann_a2 _atom_type_scat_Cromer_Mann_b2 _atom_type_scat_Cromer_Mann_a3 _atom_type_scat_Cromer_Mann_b3 _atom_type_scat_Cromer_Mann_a4 _atom_type_scat_Cromer_Mann_b4 _atom_type_scat_Cromer_Mann_c _atom_type_scat_source C 0.0033 0.0016 2.3100 20.8439 1.0200 10.2075 1.5886 0.5687 0.8650 51.6512 0.2156 'International Tables Vol C 4.2.6.8 and 6.1.1.4' H 0.0000 0.0000 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7998 0.0030 'International Tables Vol C 4.2.6.8 and 6.1.1.4' N 0.0061 0.0033 12.2126 0.0057 3.1322 9.8933 2.0125 28.9975 1.1663 0.5826 -11.5290 'International Tables Vol C 4.2.6.8 and 6.1.1.4' O 0.0106 0.0060 3.0485 13.2771 2.2868 5.7011 1.5463 0.3239 0.8670 32.9089 0.2508 'International Tables Vol C 4.2.6.8 and 6.1.1.4' S 0.1246 0.1234 6.9053 1.4679 5.2034 22.2151 1.4379 0.2536 1.5863 56.1720 0.8669 'International Tables Vol C 4.2.6.8 and 6.1.1.4' Cu 0.3201 1.2651 13.3380 3.5828 7.1676 0.2470 5.6158 11.3966 1.6735 64.8126 1.1910 'International Tables Vol C 4.2.6.8 and 6.1.1.4' _cell_formula_units_Z 4 # Given Formula = C4 H10 Cu1 N2 O2 S1 # Dc = 2.35 Fooo = 222.00 Mu = 38.89 M = 106.87 # Found Formula = H4.80 Cu0.50 N3.80 O1.20 # Dc = 2.01 FOOO = 222.00 Mu = 35.49 M = 91.41 _chemical_formula_sum 'Cu1 H4.8 N6.8 O1.2' _chemical_formula_moiety 'Cu1 H4.8 N6.8 O1.2' _chemical_compound_source ? _chemical_formula_weight 182.83 _cell_measurement_reflns_used 2853 _cell_measurement_theta_min 3 _cell_measurement_theta_max 29 _cell_measurement_temperature 293 _exptl_crystal_description needle _exptl_crystal_colour green _exptl_crystal_size_min 0.085 _exptl_crystal_size_mid 0.089 _exptl_crystal_size_max 0.210 _exptl_crystal_density_diffrn 2.012 _exptl_crystal_density_meas ? _exptl_crystal_density_method 'not measured' # Non-dispersive F(000): _exptl_crystal_F_000 222.000 _exptl_absorpt_coefficient_mu 3.549 # Sheldrick geometric approximatio 0.73 0.74 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'CrysAlis, (Oxford Diffraction, 2002)' _exptl_absorpt_correction_T_min 0.54 _exptl_absorpt_correction_T_max 0.74 _diffrn_measurement_device_type 'Oxford Diffraction XCALIBUR' _diffrn_measurement_device Area _diffrn_radiation_monochromator graphite _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.71073 _diffrn_measurement_method \w/2\q # If a reference occurs more than once, delete the author # and date from subsequent references. _computing_data_collection 'Xcalibur, (Oxford Diffraction, 2002)' _computing_cell_refinement 'CrysAlis, (Oxford Diffraction, 2002)' _computing_data_reduction 'CrysAlis, (Oxford Diffraction, 2002)' _computing_structure_solution 'SIR97 (Altomare et al., 1999)' _computing_structure_refinement 'CRYSTALS (Betteridge et al., 2003)' _computing_publication_material 'CRYSTALS (Betteridge et al., 2003)' _computing_molecular_graphics 'CAMERON (Watkin et al., 1996)' _diffrn_standards_interval_time . _diffrn_standards_interval_count . _diffrn_standards_number 0 _diffrn_standards_decay_% ? _diffrn_ambient_temperature 293 _diffrn_reflns_number 4545 _reflns_number_total 810 _diffrn_reflns_av_R_equivalents 0.039 # Number of reflections without Friedels Law is 810 # Number of reflections with Friedels Law is 0 # Theoretical number of reflections is about 810 _diffrn_reflns_theta_min 3.171 _diffrn_reflns_theta_max 29.232 _diffrn_measured_fraction_theta_max 0.917 _diffrn_reflns_theta_full 25.140 _diffrn_measured_fraction_theta_full 0.992 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_limit_l_max 16 _reflns_limit_h_min 0 _reflns_limit_h_max 8 _reflns_limit_k_min 0 _reflns_limit_k_max 9 _reflns_limit_l_min 0 _reflns_limit_l_max 16 _oxford_diffrn_Wilson_B_factor 0.00 _oxford_diffrn_Wilson_scale 0.00 _atom_sites_solution_primary Direct #heavy,direct,difmap,geom # _atom_sites_solution_secondary difmap _atom_sites_solution_hydrogens difmap _refine_diff_density_min -0.35 _refine_diff_density_max 0.15 # The current dictionary definitions do not cover the # situation where the reflections used for refinement were # selected by a user-defined sigma threshold # The values actually used during refinement _oxford_reflns_threshold_expression_ref I>3.0\s(I) _refine_ls_number_reflns 659 _refine_ls_number_restraints 6 _refine_ls_number_parameters 56 _oxford_refine_ls_R_factor_ref 0.0222 _refine_ls_wR_factor_ref 0.0256 _refine_ls_goodness_of_fit_ref 1.1142 _refine_ls_shift/su_max 0.0003963 _refine_ls_shift/su_mean 0.0000196 # The values computed from all data _oxford_reflns_number_all 809 _refine_ls_R_factor_all 0.0290 _refine_ls_wR_factor_all 0.0298 # The values computed with a 2 sigma cutoff - a la SHELX _reflns_threshold_expression I>2.0\s(I) _reflns_number_gt 700 _refine_ls_R_factor_gt 0.0237 _refine_ls_wR_factor_gt 0.0270 # choose from: rm (reference molecule of known chirality), # ad (anomolous dispersion - Flack), rmad (rm and ad), # syn (from synthesis), unk (unknown) or . (not applicable). _chemical_absolute_configuration . _refine_ls_structure_factor_coef F _refine_ls_matrix_type full _refine_ls_hydrogen_treatment noref # none, undef, noref, refall, # refxyz, refU, constr or mixed _refine_ls_weighting_scheme calc _refine_ls_weighting_details ; Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982) [weight] = 1.0/[A~0~*T~0~(x)+A~1~*T~1~(x) ... +A~n-1~]*T~n-1~(x)] where A~i~ are the Chebychev coefficients listed below and x= Fcalc/Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)^2^]^2^ A~i~ are: 3.46 -0.289 2.56 ; # Insert your own references if required - in alphabetical order _publ_section_references ; Oxford Diffraction, (2010). CrysAlisPro. Oxford Diffraction, (2002). Xcalibur User Manual. Betteridge, P.W., Carruthers, J.R., Cooper, R.I., Prout, K. & Watkin, D.J. (2003). J. Appl. Cryst. 36, 1487. Watkin, D.J., Prout, C.K. & Pearce, L.J. (1996). CAMERON, Chemical Crystallography Laboratory, Oxford, UK. Altomare, A., Burla, M.C., Camalli, M., Cascarano, G.L., Giacovazzo, C., Guagliardi, A., Grazia, A., Moliterni, G., Polidori, G. & Spagna, R. (1999). J. App. Cryst. 32, 115-119. Watkin D.J. (1994). Acta Cryst, A50, 411-437. Prince, E. Mathematical Techniques in Crystallography and Materials Science Springer-Verlag, New York, 1982. ; # Uequiv = arithmetic mean of Ui i.e. Ueqiv = (U1+U2+U3)/3 # Replace last . with number of unfound hydrogen atoms attached to an atom. # ..._refinement_flags_... # . no refinement constraints S special position constraint on site # G rigid group refinement of site R riding atom # D distance or angle restraint on site T thermal displacement constraints # U Uiso or Uij restraint (rigid bond) P partial occupancy constraint loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_occupancy _atom_site_adp_type _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp _atom_site_refinement_flags_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_attached_hydrogens Cu1 Cu 0.72579(5) 0.7500 0.64036(2) 0.0208 1.0000 Uani S T . . . . N1 N 0.8542(3) 0.7500 0.78932(17) 0.0260 1.0000 Uani S T . . . . N2 N 0.7321(3) 0.7500 0.86019(16) 0.0249 1.0000 Uani S T . . . . N3 N 0.6158(4) 0.7500 0.9299(2) 0.0461 1.0000 Uani S T . . . . N11 N 0.6194(4) 0.7500 0.48846(18) 0.0318 1.0000 Uani S T . . . . N12 N 0.7359(3) 0.7500 0.41621(18) 0.0261 1.0000 Uani S T . . . . N13 N 0.8458(5) 0.7500 0.3434(2) 0.0438 1.0000 Uani S T . . . . O21 O 0.73069(10) 0.48450(10) 0.63787(10) 0.0510 0.6000 Uani . U . . . . N21 N 0.73069(10) 0.48450(10) 0.63787(10) 0.0151 0.4000 Uani . U . . . . H213 H 0.6982 0.4379 0.6989 0.0590 0.8000 Uiso . . . . . . H215 H 0.8556 0.4568 0.6175 0.0589 0.8000 Uiso . . . . . . H214 H 0.6506 0.4510 0.5861 0.0596 0.8000 Uiso . . . . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Cu1 0.02421(18) 0.02075(18) 0.01738(17) 0.0000 -0.00290(11) 0.0000 N1 0.0215(10) 0.0389(12) 0.0177(9) 0.0000 -0.0006(8) 0.0000 N2 0.0207(10) 0.0321(13) 0.0220(11) 0.0000 -0.0062(8) 0.0000 N3 0.0267(12) 0.086(2) 0.0255(11) 0.0000 0.0021(10) 0.0000 N11 0.0275(11) 0.0471(14) 0.0209(11) 0.0000 -0.0027(9) 0.0000 N12 0.0298(11) 0.0271(11) 0.0214(10) 0.0000 -0.0075(8) 0.0000 N13 0.0429(16) 0.0608(18) 0.0278(13) 0.0000 0.0030(11) 0.0000 O21 0.053(4) 0.047(4) 0.053(4) -0.002(3) -0.004(3) 0.002(3) N21 0.020(3) 0.010(3) 0.016(3) -0.003(3) -0.001(3) -0.002(3) _refine_ls_extinction_method None _oxford_refine_ls_scale 2.810(7) loop_ _geom_bond_atom_site_label_1 _geom_bond_site_symmetry_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Cu1 . N1 4_466 2.534(2) yes Cu1 . O21 5_565 1.9772(7) yes Cu1 . N21 5_565 1.9772(7) yes Cu1 . N1 . 2.062(2) yes Cu1 . N11 . 2.046(2) yes Cu1 . O21 . 1.9772(7) yes Cu1 . N21 . 1.9772(7) yes N1 . N2 . 1.191(3) yes N2 . N3 . 1.155(3) yes N11 . N12 . 1.181(3) yes N12 . N13 . 1.160(4) yes O21 . H213 . 0.874 no O21 . H215 . 0.863 no O21 . H214 . 0.869 no N21 . H213 . 0.874 no N21 . H215 . 0.863 no N21 . H214 . 0.869 no loop_ _geom_angle_atom_site_label_1 _geom_angle_site_symmetry_1 _geom_angle_atom_site_label_2 _geom_angle_site_symmetry_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag N1 4_466 Cu1 . O21 5_565 91.171(10) yes N1 4_466 Cu1 . N21 5_565 91.171(10) yes N1 4_466 Cu1 . N1 . 92.76(4) yes O21 5_565 Cu1 . N1 . 90.48(4) yes N21 5_565 Cu1 . N1 . 90.48(4) yes N1 4_466 Cu1 . N11 . 91.27(8) yes O21 5_565 Cu1 . N11 . 89.44(4) yes N21 5_565 Cu1 . N11 . 89.44(4) yes N1 . Cu1 . N11 . 175.97(9) yes N1 4_466 Cu1 . O21 . 91.171(10) yes O21 5_565 Cu1 . O21 . 177.42(3) yes N21 5_565 Cu1 . O21 . 177.42(3) yes N1 . Cu1 . O21 . 90.48(4) yes N11 . Cu1 . O21 . 89.44(4) yes N1 4_466 Cu1 . N21 . 91.171(10) yes O21 5_565 Cu1 . N21 . 177.42(3) yes N21 5_565 Cu1 . N21 . 177.42(3) yes N1 . Cu1 . N21 . 90.48(4) yes N11 . Cu1 . N21 . 89.44(4) yes Cu1 4_566 N1 . Cu1 . 134.05(10) yes Cu1 4_566 N1 . N2 . 110.23(16) yes Cu1 . N1 . N2 . 115.72(17) yes N1 . N2 . N3 . 179.1(2) yes Cu1 . N11 . N12 . 121.61(19) yes N11 . N12 . N13 . 178.2(3) yes Cu1 . O21 . H213 . 112.2 no Cu1 . O21 . H215 . 105.0 no H213 . O21 . H215 . 113.0 no Cu1 . O21 . H214 . 106.8 no H213 . O21 . H214 . 114.7 no H215 . O21 . H214 . 104.3 no Cu1 . N21 . H213 . 112.2 no Cu1 . N21 . H215 . 105.0 no H213 . N21 . H215 . 113.0 no Cu1 . N21 . H214 . 106.8 no H213 . N21 . H214 . 114.7 no H215 . N21 . H214 . 104.3 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_site_symmetry_D _geom_hbond_atom_site_label_H _geom_hbond_site_symmetry_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_angle_DHA _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_publ_flag O21 . H213 . N13 3_645 165.31(7) 0.874 2.325 3.179 yes N21 . H213 . N13 3_645 165.31(7) 0.874 2.325 3.179 yes O21 . H215 . N13 2_766 142.35(6) 0.863 2.499 3.226 yes N21 . H215 . N13 2_766 142.35(6) 0.863 2.499 3.226 yes O21 . H214 . N11 2_666 150.89(4) 0.869 2.471 3.258 yes N21 . H214 . N11 2_666 150.89(4) 0.869 2.471 3.258 yes _iucr_refine_instruction_details_constraints ; # # Punched on 18/07/12 at 12:28:54 # #LIST 12 BLOCK SCALE X'S, U'S EQUIV O(21,X'S) UNTIL N(21) END ; _iucr_refine_instruction_details_restraints ; # # Punched on 18/07/12 at 12:28:54 # #LIST 16 NO REM HREST START (DO NOT REMOVE THIS LINE) REM HREST END (DO NOT REMOVE THIS LINE) U(IJ)'S 0.0, 0.010000 = O(21) TO N(21) END ; # Manually omitted reflections loop_ _oxford_refln_omitted_index_h _oxford_refln_omitted_index_k _oxford_refln_omitted_index_l _oxford_refln_omitted_flag _oxford_refln_omitted_details 0 2 0 x .