# Supplementary Material (ESI) for Organic & Biomolecular Chemistry # This journal is (c) The Royal Society of Chemistry 2009 data_global _journal_name_full 'Dalton Trans.' _journal_coden_Cambridge 0222 _journal_volume ? _journal_page_first ? _journal_year ? _publ_contact_author_name 'W. Bruce Turnbull' _publ_contact_author_email W.B.TURNBULL@LEEDS.AC.UK _publ_section_title ; Neighbouring group participation vs. addition to oxacarbenium ions: studies on the synthesis of mycobacterial oligosaccharides ; loop_ _publ_author_name 'W. Bruce Turnbull' 'Colin A. Kilner' 'Andrew Leach' 'Susanne A. Stalford' # Attachment 'compound_8_CCDC_735329.CIF' data_c:\docume~1\radcak\mydocu~1\xa\sh383\sh383 _database_code_depnum_ccdc_archive 'CCDC 735329' _audit_creation_method SHELXL-97 _chemical_name_systematic ; ? ; _chemical_name_common ? _chemical_melting_point ? _chemical_formula_moiety ? _chemical_formula_sum 'C19 H20 O3 S' _chemical_formula_weight 328.41 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' _symmetry_cell_setting ? _symmetry_space_group_name_H-M ? loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' 'x+1/2, -y+1/2, -z' '-x, y+1/2, -z+1/2' _cell_length_a 5.6114(4) _cell_length_b 11.6946(9) _cell_length_c 25.505(2) _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_volume 1673.7(2) _cell_formula_units_Z 4 _cell_measurement_temperature 150(2) _cell_measurement_reflns_used ? _cell_measurement_theta_min ? _cell_measurement_theta_max ? _exptl_crystal_description ? _exptl_crystal_colour ? _exptl_crystal_size_max 0.24 _exptl_crystal_size_mid 0.17 _exptl_crystal_size_min 0.05 _exptl_crystal_density_meas ? _exptl_crystal_density_diffrn 1.303 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 696 _exptl_absorpt_coefficient_mu 0.206 _exptl_absorpt_correction_type ? _exptl_absorpt_correction_T_min 0.9523 _exptl_absorpt_correction_T_max 0.9898 _exptl_absorpt_process_details ? _exptl_special_details ; ? ; _diffrn_ambient_temperature 150(2) _diffrn_radiation_wavelength 0.71073 _diffrn_radiation_type MoK\a _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_monochromator graphite _diffrn_measurement_device_type ? _diffrn_measurement_method ? _diffrn_detector_area_resol_mean ? _diffrn_standards_number ? _diffrn_standards_interval_count ? _diffrn_standards_interval_time ? _diffrn_standards_decay_% ? _diffrn_reflns_number 12065 _diffrn_reflns_av_R_equivalents 0.0414 _diffrn_reflns_av_sigmaI/netI 0.0540 _diffrn_reflns_limit_h_min -7 _diffrn_reflns_limit_h_max 4 _diffrn_reflns_limit_k_min -16 _diffrn_reflns_limit_k_max 16 _diffrn_reflns_limit_l_min -31 _diffrn_reflns_limit_l_max 34 _diffrn_reflns_theta_min 2.96 _diffrn_reflns_theta_max 29.39 _reflns_number_total 4551 _reflns_number_gt 3551 _reflns_threshold_expression >2sigma(I) _computing_data_collection ? _computing_cell_refinement ? _computing_data_reduction ? _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_molecular_graphics ? _computing_publication_material ? _refine_special_details ; Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > 2sigma(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. ; _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0504P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _atom_sites_solution_hydrogens geom _refine_ls_hydrogen_treatment mixed _refine_ls_extinction_method none _refine_ls_extinction_coef ? _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack -0.03(8) _refine_ls_number_reflns 4551 _refine_ls_number_parameters 208 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.0626 _refine_ls_R_factor_gt 0.0437 _refine_ls_wR_factor_ref 0.1051 _refine_ls_wR_factor_gt 0.0972 _refine_ls_goodness_of_fit_ref 1.045 _refine_ls_restrained_S_all 1.045 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group S1 S 0.17880(10) 0.67818(4) 0.04279(2) 0.03946(15) Uani 1 1 d . . . C2 C 0.1977(3) 0.83122(16) 0.06029(8) 0.0294(4) Uani 1 1 d . . . H2 H 0.2032 0.8827 0.0290 0.035 Uiso 1 1 calc R . . C3 C -0.0055(3) 0.85990(13) 0.09803(7) 0.0220(4) Uani 1 1 d . . . H3 H -0.1587 0.8231 0.0872 0.026 Uiso 1 1 calc R . . C4 C 0.0919(3) 0.80888(14) 0.14957(8) 0.0245(4) Uani 1 1 d . . . H4 H 0.1154 0.8717 0.1757 0.029 Uiso 1 1 calc R . . C5 C 0.3379(3) 0.76035(15) 0.13333(8) 0.0312(4) Uani 1 1 d . . . H5 H 0.4546 0.7595 0.1630 0.037 Uiso 1 1 calc R . . C6 C 0.3166(4) 0.64398(16) 0.10610(9) 0.0387(5) Uani 1 1 d . . . H6A H 0.2149 0.5912 0.1266 0.046 Uiso 1 1 calc R . . H6B H 0.4753 0.6086 0.1012 0.046 Uiso 1 1 calc R . . O7 O 0.4044(2) 0.83921(12) 0.09224(6) 0.0352(3) Uani 1 1 d . . . O31 O -0.0312(2) 0.98034(9) 0.10513(5) 0.0266(3) Uani 1 1 d . . . C32 C -0.1790(4) 1.03164(14) 0.06628(8) 0.0291(4) Uani 1 1 d . . . H32A H -0.3455 1.0056 0.0708 0.035 Uiso 1 1 calc R . . H32B H -0.1246 1.0084 0.0309 0.035 Uiso 1 1 calc R . . C33 C -0.1671(3) 1.16027(14) 0.07140(7) 0.0255(4) Uani 1 1 d . . . C34 C -0.3489(4) 1.22704(16) 0.05120(8) 0.0360(5) Uani 1 1 d . . . H34 H -0.4823 1.1914 0.0351 0.043 Uiso 1 1 calc R . . C35 C -0.3385(4) 1.34607(17) 0.05414(9) 0.0400(5) Uani 1 1 d . . . H35 H -0.4659 1.3908 0.0407 0.048 Uiso 1 1 calc R . . C36 C -0.1430(4) 1.39905(16) 0.07655(9) 0.0380(5) Uani 1 1 d . . . H36 H -0.1350 1.4801 0.0784 0.046 Uiso 1 1 calc R . . C37 C 0.0400(4) 1.33310(18) 0.09611(10) 0.0444(6) Uani 1 1 d . . . H37 H 0.1752 1.3689 0.1114 0.053 Uiso 1 1 calc R . . C38 C 0.0280(4) 1.21439(16) 0.09368(9) 0.0365(5) Uani 1 1 d . . . H38 H 0.1551 1.1699 0.1074 0.044 Uiso 1 1 calc R . . O41 O -0.0724(2) 0.72807(11) 0.17002(5) 0.0272(3) Uani 1 1 d . . . C42 C -0.0094(4) 0.68790(19) 0.22152(8) 0.0394(5) Uani 1 1 d . . . H42A H 0.0041 0.7531 0.2461 0.047 Uiso 1 1 calc R . . H42B H 0.1458 0.6477 0.2204 0.047 Uiso 1 1 calc R . . C43 C -0.2017(4) 0.60779(16) 0.23933(8) 0.0312(4) Uani 1 1 d . . . C44 C -0.2504(5) 0.5107(2) 0.21088(10) 0.0467(6) Uani 1 1 d . . . H44 H -0.1582 0.4945 0.1806 0.056 Uiso 1 1 calc R . . C45 C -0.4301(6) 0.4362(2) 0.22521(13) 0.0686(9) Uani 1 1 d . . . H45 H -0.4602 0.3698 0.2048 0.082 Uiso 1 1 calc R . . C46 C -0.5634(5) 0.4580(3) 0.26849(15) 0.0741(11) Uani 1 1 d . . . H46 H -0.6858 0.4064 0.2785 0.089 Uiso 1 1 calc R . . C47 C -0.5226(5) 0.5530(3) 0.29738(12) 0.0715(10) Uani 1 1 d . . . H47 H -0.6179 0.5682 0.3274 0.086 Uiso 1 1 calc R . . C48 C -0.3392(5) 0.6296(2) 0.28322(9) 0.0529(7) Uani 1 1 d . . . H48 H -0.3103 0.6960 0.3038 0.063 Uiso 1 1 calc R . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 S1 0.0444(3) 0.0284(2) 0.0455(3) -0.0091(2) 0.0044(3) 0.0049(2) C2 0.0255(9) 0.0259(8) 0.0366(11) -0.0013(8) 0.0074(8) -0.0035(8) C3 0.0201(8) 0.0178(7) 0.0280(10) 0.0004(7) 0.0005(8) -0.0025(6) C4 0.0180(8) 0.0218(8) 0.0336(10) 0.0015(7) -0.0007(7) -0.0031(6) C5 0.0192(8) 0.0276(9) 0.0469(12) 0.0018(8) -0.0022(9) -0.0012(8) C6 0.0314(10) 0.0261(8) 0.0586(14) -0.0022(9) 0.0013(11) 0.0073(8) O7 0.0186(6) 0.0354(7) 0.0516(9) 0.0021(7) 0.0057(6) -0.0042(5) O31 0.0307(7) 0.0195(5) 0.0295(7) -0.0001(5) -0.0042(6) 0.0023(5) C32 0.0319(9) 0.0228(8) 0.0325(10) 0.0033(7) -0.0088(9) -0.0034(8) C33 0.0289(9) 0.0228(8) 0.0248(9) 0.0029(7) 0.0012(8) -0.0002(8) C34 0.0335(11) 0.0307(9) 0.0438(12) 0.0034(9) -0.0128(10) -0.0003(8) C35 0.0437(12) 0.0288(9) 0.0476(13) 0.0047(9) -0.0095(11) 0.0073(9) C36 0.0497(13) 0.0209(8) 0.0433(12) -0.0015(8) 0.0005(11) 0.0013(9) C37 0.0394(11) 0.0298(10) 0.0640(16) -0.0118(11) -0.0103(12) -0.0032(9) C38 0.0307(10) 0.0269(9) 0.0520(14) -0.0040(9) -0.0124(10) 0.0040(8) O41 0.0217(6) 0.0295(6) 0.0304(7) 0.0100(6) -0.0024(5) -0.0033(5) C42 0.0413(11) 0.0425(11) 0.0343(12) 0.0145(9) -0.0133(10) -0.0094(10) C43 0.0342(10) 0.0332(10) 0.0263(10) 0.0113(8) -0.0034(9) 0.0014(8) C44 0.0576(14) 0.0443(13) 0.0383(12) 0.0042(10) 0.0033(11) -0.0112(10) C45 0.0728(19) 0.0588(16) 0.074(2) 0.0277(15) -0.0188(18) -0.0345(15) C46 0.0366(14) 0.090(2) 0.096(3) 0.069(2) -0.0076(16) -0.0086(15) C47 0.0595(18) 0.098(2) 0.0568(18) 0.0485(18) 0.0306(15) 0.0342(18) C48 0.0752(18) 0.0501(13) 0.0334(12) 0.0124(11) 0.0056(13) 0.0209(14) _geom_special_details ; All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. ; loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag S1 C6 1.834(2) . ? S1 C2 1.8477(19) . ? C2 O7 1.420(2) . ? C2 C3 1.530(2) . ? C2 H2 1.0000 . ? C3 O31 1.4274(19) . ? C3 C4 1.544(3) . ? C3 H3 1.0000 . ? C4 O41 1.419(2) . ? C4 C5 1.549(2) . ? C4 H4 1.0000 . ? C5 O7 1.445(2) . ? C5 C6 1.533(3) . ? C5 H5 1.0000 . ? C6 H6A 0.9900 . ? C6 H6B 0.9900 . ? O31 C32 1.424(2) . ? C32 C33 1.511(2) . ? C32 H32A 0.9900 . ? C32 H32B 0.9900 . ? C33 C34 1.384(3) . ? C33 C38 1.386(3) . ? C34 C35 1.395(3) . ? C34 H34 0.9500 . ? C35 C36 1.383(3) . ? C35 H35 0.9500 . ? C36 C37 1.378(3) . ? C36 H36 0.9500 . ? C37 C38 1.391(3) . ? C37 H37 0.9500 . ? C38 H38 0.9500 . ? O41 C42 1.439(2) . ? C42 C43 1.499(3) . ? C42 H42A 0.9900 . ? C42 H42B 0.9900 . ? C43 C44 1.375(3) . ? C43 C48 1.383(3) . ? C44 C45 1.382(3) . ? C44 H44 0.9500 . ? C45 C46 1.358(5) . ? C45 H45 0.9500 . ? C46 C47 1.352(5) . ? C46 H46 0.9500 . ? C47 C48 1.412(4) . ? C47 H47 0.9500 . ? C48 H48 0.9500 . ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag C6 S1 C2 88.52(9) . . ? O7 C2 C3 103.49(14) . . ? O7 C2 S1 104.44(13) . . ? C3 C2 S1 108.76(12) . . ? O7 C2 H2 113.1 . . ? C3 C2 H2 113.1 . . ? S1 C2 H2 113.1 . . ? O31 C3 C2 111.80(14) . . ? O31 C3 C4 108.02(14) . . ? C2 C3 C4 100.78(14) . . ? O31 C3 H3 111.9 . . ? C2 C3 H3 111.9 . . ? C4 C3 H3 111.9 . . ? O41 C4 C3 109.88(14) . . ? O41 C4 C5 115.66(14) . . ? C3 C4 C5 103.27(15) . . ? O41 C4 H4 109.3 . . ? C3 C4 H4 109.3 . . ? C5 C4 H4 109.3 . . ? O7 C5 C6 104.96(17) . . ? O7 C5 C4 100.95(14) . . ? C6 C5 C4 112.15(16) . . ? O7 C5 H5 112.7 . . ? C6 C5 H5 112.7 . . ? C4 C5 H5 112.7 . . ? C5 C6 S1 103.79(13) . . ? C5 C6 H6A 111.0 . . ? S1 C6 H6A 111.0 . . ? C5 C6 H6B 111.0 . . ? S1 C6 H6B 111.0 . . ? H6A C6 H6B 109.0 . . ? C2 O7 C5 99.41(13) . . ? C32 O31 C3 112.73(13) . . ? O31 C32 C33 109.48(15) . . ? O31 C32 H32A 109.8 . . ? C33 C32 H32A 109.8 . . ? O31 C32 H32B 109.8 . . ? C33 C32 H32B 109.8 . . ? H32A C32 H32B 108.2 . . ? C34 C33 C38 118.49(16) . . ? C34 C33 C32 119.79(17) . . ? C38 C33 C32 121.65(17) . . ? C33 C34 C35 120.80(19) . . ? C33 C34 H34 119.6 . . ? C35 C34 H34 119.6 . . ? C36 C35 C34 120.14(19) . . ? C36 C35 H35 119.9 . . ? C34 C35 H35 119.9 . . ? C37 C36 C35 119.33(18) . . ? C37 C36 H36 120.3 . . ? C35 C36 H36 120.3 . . ? C36 C37 C38 120.4(2) . . ? C36 C37 H37 119.8 . . ? C38 C37 H37 119.8 . . ? C33 C38 C37 120.80(18) . . ? C33 C38 H38 119.6 . . ? C37 C38 H38 119.6 . . ? C4 O41 C42 113.15(14) . . ? O41 C42 C43 107.69(16) . . ? O41 C42 H42A 110.2 . . ? C43 C42 H42A 110.2 . . ? O41 C42 H42B 110.2 . . ? C43 C42 H42B 110.2 . . ? H42A C42 H42B 108.5 . . ? C44 C43 C48 117.9(2) . . ? C44 C43 C42 120.0(2) . . ? C48 C43 C42 122.1(2) . . ? C43 C44 C45 121.8(3) . . ? C43 C44 H44 119.1 . . ? C45 C44 H44 119.1 . . ? C46 C45 C44 119.9(3) . . ? C46 C45 H45 120.1 . . ? C44 C45 H45 120.1 . . ? C47 C46 C45 120.3(3) . . ? C47 C46 H46 119.9 . . ? C45 C46 H46 119.9 . . ? C46 C47 C48 120.4(3) . . ? C46 C47 H47 119.8 . . ? C48 C47 H47 119.8 . . ? C43 C48 C47 119.8(3) . . ? C43 C48 H48 120.1 . . ? C47 C48 H48 120.1 . . ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag C6 S1 C2 O7 31.17(13) . . . . ? C6 S1 C2 C3 -78.82(14) . . . . ? O7 C2 C3 O31 80.97(17) . . . . ? S1 C2 C3 O31 -168.41(12) . . . . ? O7 C2 C3 C4 -33.57(16) . . . . ? S1 C2 C3 C4 77.05(14) . . . . ? O31 C3 C4 O41 119.44(15) . . . . ? C2 C3 C4 O41 -123.20(15) . . . . ? O31 C3 C4 C5 -116.61(15) . . . . ? C2 C3 C4 C5 0.75(16) . . . . ? O41 C4 C5 O7 151.35(15) . . . . ? C3 C4 C5 O7 31.29(17) . . . . ? O41 C4 C5 C6 40.1(2) . . . . ? C3 C4 C5 C6 -79.97(18) . . . . ? O7 C5 C6 S1 -38.89(17) . . . . ? C4 C5 C6 S1 69.84(18) . . . . ? C2 S1 C6 C5 4.41(14) . . . . ? C3 C2 O7 C5 55.24(16) . . . . ? S1 C2 O7 C5 -58.54(14) . . . . ? C6 C5 O7 C2 63.56(17) . . . . ? C4 C5 O7 C2 -53.14(16) . . . . ? C2 C3 O31 C32 86.33(18) . . . . ? C4 C3 O31 C32 -163.67(13) . . . . ? C3 O31 C32 C33 -171.39(15) . . . . ? O31 C32 C33 C34 -158.22(17) . . . . ? O31 C32 C33 C38 25.0(3) . . . . ? C38 C33 C34 C35 -1.3(3) . . . . ? C32 C33 C34 C35 -178.2(2) . . . . ? C33 C34 C35 C36 1.2(3) . . . . ? C34 C35 C36 C37 -0.3(3) . . . . ? C35 C36 C37 C38 -0.4(4) . . . . ? C34 C33 C38 C37 0.6(3) . . . . ? C32 C33 C38 C37 177.4(2) . . . . ? C36 C37 C38 C33 0.3(4) . . . . ? C3 C4 O41 C42 -172.22(16) . . . . ? C5 C4 O41 C42 71.4(2) . . . . ? C4 O41 C42 C43 177.52(16) . . . . ? O41 C42 C43 C44 60.0(3) . . . . ? O41 C42 C43 C48 -118.1(2) . . . . ? C48 C43 C44 C45 -0.2(3) . . . . ? C42 C43 C44 C45 -178.4(2) . . . . ? C43 C44 C45 C46 -0.1(4) . . . . ? C44 C45 C46 C47 0.6(4) . . . . ? C45 C46 C47 C48 -0.8(4) . . . . ? C44 C43 C48 C47 0.0(3) . . . . ? C42 C43 C48 C47 178.1(2) . . . . ? C46 C47 C48 C43 0.5(4) . . . . ? _diffrn_measured_fraction_theta_max 0.991 _diffrn_reflns_theta_full 29.39 _diffrn_measured_fraction_theta_full 0.991 _refine_diff_density_max 0.331 _refine_diff_density_min -0.281 _refine_diff_density_rms 0.045