# Supplementary Material (ESI) for Organic and Biomolecular Chemistry # This journal is © The Royal Society of Chemistry 2009 data_global _journal_name_full Org.Biomol.Chem. _journal_coden_Cambridge 0177 _publ_contact_author_name 'Cehpuri Ramana' _publ_contact_author_email VR.CHEPURI@NCL.RES.IN _publ_section_title ; Effect of the allylic substituents on ring closing metathesis: The total synthesis of stagonolide B and 4-epi-stagonolide B ; loop_ _publ_author_name 'Cehpuri Ramana' 'Awadut G. Giri' 'Mohabul A. Mondal' 'Vedavati G Puranik' # Attachment 'CIF_CVR.cif' data_4-epi-staganolideB _database_code_depnum_ccdc_archive 'CCDC 743822' _audit_creation_method SHELXL-97 _chemical_name_systematic ; ? ; _chemical_name_common ? _chemical_melting_point 185-187 _chemical_formula_moiety 'C12 H20 O5' _chemical_formula_sum 'C12 H20 O5' _chemical_formula_weight 244.28 _chemical_absolute_configuration syn loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' _symmetry_cell_setting Monoclinic _symmetry_space_group_name_H-M C2 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z' _cell_length_a 16.861(15) _cell_length_b 4.981(4) _cell_length_c 16.109(14) _cell_angle_alpha 90.00 _cell_angle_beta 112.087(14) _cell_angle_gamma 90.00 _cell_volume 1253.7(19) _cell_formula_units_Z 4 _cell_measurement_temperature 295(2) _cell_measurement_reflns_used 503 _cell_measurement_theta_min 2.45 _cell_measurement_theta_max 18.88 _exptl_crystal_description plate _exptl_crystal_colour colourless _exptl_crystal_size_max 0.14 _exptl_crystal_size_mid 0.05 _exptl_crystal_size_min 0.02 _exptl_crystal_density_meas ? _exptl_crystal_density_diffrn 1.294 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 528 _exptl_absorpt_coefficient_mu 0.100 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_correction_T_min 0.9864 _exptl_absorpt_correction_T_max 0.9979 _exptl_absorpt_process_details 'Bruker SADABS' _exptl_special_details ; ? ; _diffrn_ambient_temperature 295(2) _diffrn_radiation_wavelength 0.71073 _diffrn_radiation_type MoK\a _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_monochromator graphite _diffrn_measurement_device_type 'Bruker Smart APEX' _diffrn_measurement_method 'Phi and Omega Scan' _diffrn_detector_area_resol_mean ? _diffrn_standards_number ? _diffrn_standards_interval_count ? _diffrn_standards_interval_time ? _diffrn_standards_decay_% ? _diffrn_reflns_number 5114 _diffrn_reflns_av_R_equivalents 0.1106 _diffrn_reflns_av_sigmaI/netI 0.1956 _diffrn_reflns_limit_h_min -20 _diffrn_reflns_limit_h_max 19 _diffrn_reflns_limit_k_min -5 _diffrn_reflns_limit_k_max 5 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_limit_l_max 19 _diffrn_reflns_theta_min 1.36 _diffrn_reflns_theta_max 25.00 _reflns_number_total 2177 _reflns_number_gt 948 _reflns_threshold_expression >2sigma(I) _computing_data_collection 'SMART (Bruker, 2003)' _computing_cell_refinement 'SAINT (Bruker, 2003)' _computing_data_reduction SAINT _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_molecular_graphics 'ORTEP-3 (Farrugia, 1997)' _computing_publication_material 'SHELXTL (Bruker, 2003)' _refine_special_details ; Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > 2sigma(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. ; _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0761P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _atom_sites_solution_hydrogens geom _refine_ls_hydrogen_treatment constr _refine_ls_extinction_method none _refine_ls_extinction_coef ? _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 5(3) _refine_ls_number_reflns 2177 _refine_ls_number_parameters 158 _refine_ls_number_restraints 1 _refine_ls_R_factor_all 0.1490 _refine_ls_R_factor_gt 0.0720 _refine_ls_wR_factor_ref 0.1731 _refine_ls_wR_factor_gt 0.1554 _refine_ls_goodness_of_fit_ref 0.835 _refine_ls_restrained_S_all 0.835 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group O1 O 0.2588(2) 0.6950(8) 0.2109(3) 0.0382(11) Uani 1 1 d . . . O2 O 0.2028(3) 1.1014(9) 0.2140(4) 0.0595(15) Uani 1 1 d . . . O3 O 0.0698(3) 0.7078(8) 0.4019(3) 0.0442(12) Uani 1 1 d . . . H3' H 0.0616 0.8690 0.4052 0.066 Uiso 1 1 calc R . . O4 O 0.3724(3) 1.0129(8) 0.4195(3) 0.0400(11) Uani 1 1 d . . . H4' H 0.3913 1.0492 0.4730 0.060 Uiso 1 1 calc R . . O5 O 0.4829(2) 0.7019(8) 0.3612(3) 0.0416(11) Uani 1 1 d . . . H5' H 0.4937 0.8599 0.3752 0.062 Uiso 1 1 calc R . . C1 C 0.1940(4) 0.8615(16) 0.2048(4) 0.0404(17) Uani 1 1 d . . . C2 C 0.1124(3) 0.7182(13) 0.1852(4) 0.0394(16) Uani 1 1 d . . . H2A H 0.1224 0.5265 0.1852 0.047 Uiso 1 1 calc R . . H2B H 0.0728 0.7678 0.1259 0.047 Uiso 1 1 calc R . . C3 C 0.0715(4) 0.7809(12) 0.2533(4) 0.0417(18) Uani 1 1 d . . . H3A H 0.0681 0.9743 0.2583 0.050 Uiso 1 1 calc R . . H3B H 0.0134 0.7117 0.2306 0.050 Uiso 1 1 calc R . . C4 C 0.1188(4) 0.6654(13) 0.3467(4) 0.0378(16) Uani 1 1 d . . . H4 H 0.1228 0.4709 0.3399 0.045 Uiso 1 1 calc R . . C5 C 0.2070(4) 0.7689(12) 0.3863(4) 0.0377(17) Uani 1 1 d . . . H5 H 0.2154 0.9408 0.4107 0.045 Uiso 1 1 calc R . . C6 C 0.2751(4) 0.6297(11) 0.3892(4) 0.0355(17) Uani 1 1 d . . . H6 H 0.2660 0.4470 0.3777 0.043 Uiso 1 1 calc R . . C7 C 0.3634(4) 0.7232(12) 0.4079(4) 0.0387(16) Uani 1 1 d . . . H7 H 0.4019 0.6363 0.4629 0.046 Uiso 1 1 calc R . . C8 C 0.3928(3) 0.6572(12) 0.3335(4) 0.0335(15) Uani 1 1 d . . . H8 H 0.3839 0.4639 0.3228 0.040 Uiso 1 1 calc R . . C9 C 0.3460(4) 0.7943(12) 0.2434(4) 0.0370(17) Uani 1 1 d . . . H9 H 0.3460 0.9890 0.2521 0.044 Uiso 1 1 calc R . . C10 C 0.3813(4) 0.7322(14) 0.1735(4) 0.0453(17) Uani 1 1 d . . . H10A H 0.3778 0.5398 0.1636 0.054 Uiso 1 1 calc R . . H10B H 0.4414 0.7808 0.1967 0.054 Uiso 1 1 calc R . . C11 C 0.3381(5) 0.8698(16) 0.0844(4) 0.063(2) Uani 1 1 d . . . H11A H 0.3400 1.0624 0.0939 0.075 Uiso 1 1 calc R . . H11B H 0.2784 0.8163 0.0595 0.075 Uiso 1 1 calc R . . C12 C 0.3790(5) 0.805(2) 0.0172(5) 0.095(3) Uani 1 1 d . . . H12A H 0.4402 0.8082 0.0468 0.142 Uiso 1 1 calc R . . H12B H 0.3616 0.9361 -0.0299 0.142 Uiso 1 1 calc R . . H12C H 0.3611 0.6299 -0.0076 0.142 Uiso 1 1 calc R . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O1 0.036(2) 0.027(2) 0.048(2) 0.001(2) 0.011(2) 0.008(2) O2 0.067(3) 0.017(3) 0.102(4) 0.006(3) 0.041(3) 0.009(2) O3 0.049(3) 0.032(3) 0.062(3) 0.008(3) 0.032(2) 0.005(3) O4 0.053(3) 0.026(2) 0.036(3) 0.000(2) 0.011(2) -0.006(2) O5 0.033(2) 0.029(2) 0.062(3) -0.006(3) 0.017(2) -0.001(2) C1 0.039(4) 0.050(5) 0.028(4) 0.010(4) 0.007(3) 0.000(4) C2 0.042(4) 0.030(4) 0.043(4) -0.013(4) 0.013(3) 0.006(4) C3 0.040(4) 0.028(4) 0.050(4) 0.001(3) 0.008(3) 0.000(3) C4 0.050(4) 0.027(4) 0.042(4) -0.004(3) 0.024(3) 0.004(3) C5 0.040(4) 0.030(4) 0.039(4) -0.004(3) 0.011(3) -0.001(3) C6 0.042(4) 0.015(3) 0.047(4) 0.005(3) 0.014(3) 0.004(3) C7 0.037(4) 0.029(4) 0.049(4) 0.008(4) 0.015(3) 0.005(3) C8 0.036(4) 0.020(3) 0.047(4) 0.003(3) 0.017(3) 0.004(3) C9 0.033(4) 0.028(4) 0.042(4) -0.004(3) 0.005(3) 0.002(3) C10 0.042(4) 0.047(5) 0.049(4) 0.004(4) 0.019(3) 0.007(4) C11 0.082(6) 0.061(5) 0.045(4) 0.007(4) 0.023(4) -0.004(4) C12 0.100(7) 0.142(10) 0.057(5) 0.013(6) 0.047(5) -0.006(6) _geom_special_details ; All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. ; loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag O1 C1 1.346(8) . ? O1 C9 1.450(7) . ? O2 C1 1.207(8) . ? O3 C4 1.439(6) . ? O3 H3' 0.8200 . ? O4 C7 1.456(7) . ? O4 H4' 0.8200 . ? O5 C8 1.431(6) . ? O5 H5' 0.8200 . ? C1 C2 1.476(9) . ? C2 C3 1.531(7) . ? C2 H2A 0.9700 . ? C2 H2B 0.9700 . ? C3 C4 1.526(8) . ? C3 H3A 0.9700 . ? C3 H3B 0.9700 . ? C4 C5 1.473(7) . ? C4 H4 0.9800 . ? C5 C6 1.328(7) . ? C5 H5 0.9300 . ? C6 C7 1.478(8) . ? C6 H6 0.9300 . ? C7 C8 1.496(8) . ? C7 H7 0.9800 . ? C8 C9 1.527(8) . ? C8 H8 0.9800 . ? C9 C10 1.490(8) . ? C9 H9 0.9800 . ? C10 C11 1.508(9) . ? C10 H10A 0.9700 . ? C10 H10B 0.9700 . ? C11 C12 1.521(10) . ? C11 H11A 0.9700 . ? C11 H11B 0.9700 . ? C12 H12A 0.9600 . ? C12 H12B 0.9600 . ? C12 H12C 0.9600 . ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag C1 O1 C9 120.1(5) . . ? C4 O3 H3' 109.5 . . ? C7 O4 H4' 109.5 . . ? C8 O5 H5' 109.5 . . ? O2 C1 O1 122.8(6) . . ? O2 C1 C2 124.6(7) . . ? O1 C1 C2 112.6(6) . . ? C1 C2 C3 112.6(5) . . ? C1 C2 H2A 109.1 . . ? C3 C2 H2A 109.1 . . ? C1 C2 H2B 109.1 . . ? C3 C2 H2B 109.1 . . ? H2A C2 H2B 107.8 . . ? C4 C3 C2 114.8(5) . . ? C4 C3 H3A 108.6 . . ? C2 C3 H3A 108.6 . . ? C4 C3 H3B 108.6 . . ? C2 C3 H3B 108.6 . . ? H3A C3 H3B 107.5 . . ? O3 C4 C5 113.6(5) . . ? O3 C4 C3 110.2(5) . . ? C5 C4 C3 111.4(5) . . ? O3 C4 H4 107.1 . . ? C5 C4 H4 107.1 . . ? C3 C4 H4 107.1 . . ? C6 C5 C4 123.4(5) . . ? C6 C5 H5 118.3 . . ? C4 C5 H5 118.3 . . ? C5 C6 C7 129.3(5) . . ? C5 C6 H6 115.3 . . ? C7 C6 H6 115.3 . . ? O4 C7 C6 112.8(5) . . ? O4 C7 C8 105.6(5) . . ? C6 C7 C8 112.2(5) . . ? O4 C7 H7 108.7 . . ? C6 C7 H7 108.7 . . ? C8 C7 H7 108.7 . . ? O5 C8 C7 110.4(5) . . ? O5 C8 C9 109.6(5) . . ? C7 C8 C9 117.1(5) . . ? O5 C8 H8 106.4 . . ? C7 C8 H8 106.4 . . ? C9 C8 H8 106.4 . . ? O1 C9 C10 107.1(5) . . ? O1 C9 C8 106.4(5) . . ? C10 C9 C8 114.5(5) . . ? O1 C9 H9 109.5 . . ? C10 C9 H9 109.5 . . ? C8 C9 H9 109.5 . . ? C9 C10 C11 116.0(5) . . ? C9 C10 H10A 108.3 . . ? C11 C10 H10A 108.3 . . ? C9 C10 H10B 108.3 . . ? C11 C10 H10B 108.3 . . ? H10A C10 H10B 107.4 . . ? C10 C11 C12 113.3(6) . . ? C10 C11 H11A 108.9 . . ? C12 C11 H11A 108.9 . . ? C10 C11 H11B 108.9 . . ? C12 C11 H11B 108.9 . . ? H11A C11 H11B 107.7 . . ? C11 C12 H12A 109.5 . . ? C11 C12 H12B 109.5 . . ? H12A C12 H12B 109.5 . . ? C11 C12 H12C 109.5 . . ? H12A C12 H12C 109.5 . . ? H12B C12 H12C 109.5 . . ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag C9 O1 C1 O2 10.0(9) . . . . ? C9 O1 C1 C2 -170.3(5) . . . . ? O2 C1 C2 C3 -54.6(9) . . . . ? O1 C1 C2 C3 125.7(6) . . . . ? C1 C2 C3 C4 -69.8(8) . . . . ? C2 C3 C4 O3 -173.0(5) . . . . ? C2 C3 C4 C5 59.9(7) . . . . ? O3 C4 C5 C6 133.4(6) . . . . ? C3 C4 C5 C6 -101.5(7) . . . . ? C4 C5 C6 C7 165.2(6) . . . . ? C5 C6 C7 O4 -3.9(9) . . . . ? C5 C6 C7 C8 -123.0(7) . . . . ? O4 C7 C8 O5 68.2(6) . . . . ? C6 C7 C8 O5 -168.6(5) . . . . ? O4 C7 C8 C9 -58.1(6) . . . . ? C6 C7 C8 C9 65.1(7) . . . . ? C1 O1 C9 C10 -124.5(5) . . . . ? C1 O1 C9 C8 112.5(5) . . . . ? O5 C8 C9 O1 168.2(4) . . . . ? C7 C8 C9 O1 -65.0(6) . . . . ? O5 C8 C9 C10 50.1(7) . . . . ? C7 C8 C9 C10 176.8(5) . . . . ? O1 C9 C10 C11 63.8(7) . . . . ? C8 C9 C10 C11 -178.5(5) . . . . ? C9 C10 C11 C12 178.1(6) . . . . ? _diffrn_measured_fraction_theta_max 0.997 _diffrn_reflns_theta_full 25.00 _diffrn_measured_fraction_theta_full 0.997 _refine_diff_density_max 0.277 _refine_diff_density_min -0.275 _refine_diff_density_rms 0.060