Issue 16, 1994

Enzyme catalysis and transition structures in vacuo. Transition structures for the enolization, carboxylation and oxygenation reactions in ribulose-1,5-bisphosphate carboxylase/oxygenase enzyme (Rubisco)

Abstract

An extended scheme of enzyme catalysis is presented. This highlights the process of binding leading to activated substrates and requires a detailed knowledge of the transition structure, which is a saddle point of index one on the energy hypersurface, characterizing the chemical interconversion step for the reaction in vacuo. The theory underlying the new scheme goes a step beyond the standard transition-state approach to rate processes. An AM1 characterization is presented of saddle points of index 1 for the enolization carboxylation and oxygenation steps in the molecular reaction mechanism of ribulose-1,5-bisphosphate carboxylase/oxygenase, using 3,4-dihydroxypentan-2-one as substrate model. It is shown that the transition structure of highest energy is for enolization. The successor complex of enolization is a fragment of the precursor complex for carboxylation and oxygenation. The former is in a singlet spin state, the latter is a triplet. Both reactions are ‘inevitable’ once enolization is accomplished in the distorted geometry the fragment has at the active site. Moreover, similar geometric structures are found for the D-ribulose-1,5-bisphosphate (RuBP) moiety in the transition structures of carboxylation and oxygenation showing that the precursor complexes correspond to highly deformed molecular species with respect to the ground-state structures in vacuo. The computed results allow for a simple explanation of Rubisco's bifunctionality.

Article information

Article type
Paper

J. Chem. Soc., Faraday Trans., 1994,90, 2365-2374

Enzyme catalysis and transition structures in vacuo. Transition structures for the enolization, carboxylation and oxygenation reactions in ribulose-1,5-bisphosphate carboxylase/oxygenase enzyme (Rubisco)

O. Tapia, J. Andrés and V. S. Safont, J. Chem. Soc., Faraday Trans., 1994, 90, 2365 DOI: 10.1039/FT9949002365

To request permission to reproduce material from this article, please go to the Copyright Clearance Center request page.

If you are an author contributing to an RSC publication, you do not need to request permission provided correct acknowledgement is given.

If you are the author of this article, you do not need to request permission to reproduce figures and diagrams provided correct acknowledgement is given. If you want to reproduce the whole article in a third-party publication (excluding your thesis/dissertation for which permission is not required) please go to the Copyright Clearance Center request page.

Read more about how to correctly acknowledge RSC content.

Spotlight

Advertisements